| |
|
|
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
|
Data corrente: |
12/02/2015 |
|
Data da última atualização: |
20/06/2024 |
|
Tipo da produção científica: |
Artigo em Anais de Congresso |
|
Autoria: |
SILVA, J. M. da; GIACHETTO, P. F.; SILVA, L. O. C. da; PAIVA, S. R.; CAETANO, A. R.; YAMAGISHI, M. E. B. |
|
Afiliação: |
JOAQUIM MANOEL DA SILVA; POLIANA FERNANDA GIACHETTO, CNPTIA; LUIZ OTAVIO CAMPOS DA SILVA, CNPGC; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA. |
|
Título: |
Detection of copy number variations in nelore beef cattle with high-density SNP genotyping data. |
|
Ano de publicação: |
2014 |
|
Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 22., 2014, San Diego, CA. [Abstracts]. San Diego: [s.n.], 2014. |
|
Páginas: |
Não paginado. |
|
Idioma: |
Inglês |
|
Notas: |
P553. |
|
Conteúdo: |
Genome-wide single nucleotide polymorphism (SNP) genotyping platforms have been widely used in studies in diverse areas, ranging from population genetics to applied genetic improvement and breeding. SNP genotyping data generated with these platforms can also be used for detecting and genotyping copy number variations (CNVs). CNVs are defined as a variable copy numbers of DNA segments ranging from 50bp to several megabases (Mbp), in comparison with a reference genome. Several studies have identified an abundance of CNVs in human and domestic animal genomes, where it has been shown that they are involved in phenotypic variability. This initial study reports a high resolution map of CNVs in Nelore beef cattle generated with the PennCNV software. CNVs were called in a dataset from 1709 animals of the Nelore breed genotyped with Illumina BovineHD BeadChip for a total of 735,242 markers. After non-restrictive quality filtering, a total of 246,290 CNVs were identified on autosomal chromosomes, representing 219,997 and 26,293 gain and loss events, respectively. CNVs lengths ranged from 20.02 Kb to 8.37 Mb with an average of 352 Kb and a median of 204.5 Kb. The number of SNPs in each detected CNV varied from 20 to 2,116 with an average of 104 and a median of 63. A total of 138,066 CNVs were present in regions with annotated genes. |
|
Palavras-Chave: |
Polimorfismo de nucleotídeo único. |
|
Thesagro: |
Gado de corte. |
|
Thesaurus Nal: |
Beef cattle; Nellore; Single nucleotide polymorphism. |
|
Categoria do assunto: |
G Melhoramento Genético |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/117503/1/Joaquim-Manoel-Silva-PAG-XXII-2014-ARC-CNVR.pdf
|
|
Marc: |
LEADER 02172nam a2200253 a 4500
001 2008652
005 2024-06-20
008 2014 bl uuuu u01u1 u #d
100 1 $aSILVA, J. M. da
245 $aDetection of copy number variations in nelore beef cattle with high-density SNP genotyping data.$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 22., 2014, San Diego, CA. [Abstracts]. San Diego: [s.n.], 2014.$c2014
300 $aNão paginado.
500 $aP553.
520 $aGenome-wide single nucleotide polymorphism (SNP) genotyping platforms have been widely used in studies in diverse areas, ranging from population genetics to applied genetic improvement and breeding. SNP genotyping data generated with these platforms can also be used for detecting and genotyping copy number variations (CNVs). CNVs are defined as a variable copy numbers of DNA segments ranging from 50bp to several megabases (Mbp), in comparison with a reference genome. Several studies have identified an abundance of CNVs in human and domestic animal genomes, where it has been shown that they are involved in phenotypic variability. This initial study reports a high resolution map of CNVs in Nelore beef cattle generated with the PennCNV software. CNVs were called in a dataset from 1709 animals of the Nelore breed genotyped with Illumina BovineHD BeadChip for a total of 735,242 markers. After non-restrictive quality filtering, a total of 246,290 CNVs were identified on autosomal chromosomes, representing 219,997 and 26,293 gain and loss events, respectively. CNVs lengths ranged from 20.02 Kb to 8.37 Mb with an average of 352 Kb and a median of 204.5 Kb. The number of SNPs in each detected CNV varied from 20 to 2,116 with an average of 104 and a median of 63. A total of 138,066 CNVs were present in regions with annotated genes.
650 $aBeef cattle
650 $aNellore
650 $aSingle nucleotide polymorphism
650 $aGado de corte
653 $aPolimorfismo de nucleotídeo único
700 1 $aGIACHETTO, P. F.
700 1 $aSILVA, L. O. C. da
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
700 1 $aYAMAGISHI, M. E. B.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
| Registros recuperados : 6 | |
| 1. |  | RIFFEL, A.; BENISIO FILHO; OLIVIERA, J.; BIRKETT, M.; ZHOU, J. J.; PICKETT, J.; SANTANA, A. A gene coding for a putative terpene synthase for sugarcane is induced during diatraea saccharalis infestation. In: INTERNATIONAL CHEMICAL ECOLOGY CONFERENCE, 2013, Victoria. Abstracts... Victoria, AT: International society of Chemical Ecology, 2013.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
|    |
| 2. | | FARIAS, L. R. de; BÁO, S. N.; ZHOU, J. J.; PAPPAS JUNIOR, G. J.; MORAES, M. C. B.; LAUMANN, R. A.; BORGES, M. Estudo da expressão de genes relacionados à olfação no percevejo-marrom, Euschistus Heros (Hemiptera: Pentatimidae), praga da soja. In: CONGRESSO BRASILEIRO DE ENTOMOLOGIA, 23., 2010, Natal, RN. Anais... Natal: Sociedade Brasileira de Entomologia, 2010. CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
| |
| 3. | | FARIAS, L. R.; PAULA, D. P.; ZHOU, J. J.; LIU, R.; PAPPAS JUNIOR, G. J.; MORAES, M. C. B.; LAUMANN, R. A.; BORGES, M.; BIRKETT, M. A.; PICKETT, J. A.; FIELD, L. M.; BÁO, S. N. Identification and expression profile of two putative odorant-binding proteins from the neotropical brown stink bug, euschistus heros (Fabricius) (Hemiptera: Pentatomidae). Neotropical entomology, v. 43, p. 106-114, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
|  |
| 4. | | MICHEREFF, M. F. F.; GRYNBERG, P.; TOGAWA, R. C.; COSTA, M. M. do C.; LAUMANN, R. A.; ZHOU, J.-J.; SCHIMMELPFENG, P. H. C.; BORGES, M.; PICKETT, J. A.; BIRKETT, M. A.; MORAES, M. C. B. Priming of indirect defence responses in maize is shown to be genotype-specific. Arthropod-Plant Interactions, v. 15, p. 313-328, 2021. Na publicação: Marcos M. C. Costa; Maria Carolina Blassioli-Moraes.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
| |
| 5. | | MICHEREFF, M. M.; MAGALHÃES, D. M.; HASSEMER, M. J.; LAUMANN, R. A.; ZHOU, J.-J.; RIBEIRO, P. E. de A.; VIANA, P. A.; GUIMARAES, P. E. de O.; SCHIMMELPFENG, P. H. C.; BORGES, M.; PICKETT, J. A.; BIRKETT, M. A.; BLASSIOLI-MORAES, M. C. Variability in herbivore-induced defence signalling across different maize genotypes impacts significantly on natural enemy foraging behaviour. Journal of Pest Science, v. 92, p. 723-736, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
| |
| 6. | | MICHEREFF, M. M.; MAGALHÃES, D. M.; HASSEMER, M. J.; LAUMANN, R. A.; ZHOU, J.-J.; RIBEIRO, P. E. de A.; VIANA, P. A.; GUIMARAES, P. E. de O.; SCHIMMELPFENG, P. H. C.; BORGES, M.; PICKETT, J. A.; BIRKETT, M. A.; MORAES, M. C. B. Variability in herbivore-induced defence signalling across different maize genotypes impacts significantly on natural enemy foraging behaviour. Journal of Pest Science, v. 92, p. 723-736, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| Registros recuperados : 6 | |
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
