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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
18/01/2022 |
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Data da última atualização: |
18/01/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
NONATO, J. V. A.; CARVALHO, H. F.; BORGES, K. L. R.; PADILHA, L.; MALUF, M. P.; FRITSCHE NETO, R.; GUERREIRO FILHO, O. |
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Afiliação: |
JULIANA VIEIRA ALMEIDA NONATO, IAC; HUMBERTO FANELLI CARVALHO, IAC; KARINA LIMA REIS BORGES, ESALQ; LILIAN PADILHA, CNPCa; MIRIAN PEREZ MALUF, CNPCa; ROBERTO FRITSCHE NETO, ESALQ; OLIVEIRO GUERREIRO FILHO, IAC. |
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Título: |
Association mapping reveals genomic regions associated with bienniality and resistance to biotic stresses in arabica coffee. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
Euphytica, v. 217, n. 10, p. 1-19, 2021. |
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DOI: |
https://doi.org/10.1007/s10681-021-02922-9 |
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Idioma: |
Inglês |
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Conteúdo: |
The bienniality of production and the incidence of pests and diseases, such as coffee leaf miner and coffee leaf rust, stands out among the factors that limit coffee crop yield. Obtaining cultivars with greater stability in production and resistance to these biotic agents are among the main objectives of coffee breeding programs. In this way, biotechnological tools such as Genomic Wide Association Studies (GWAS) can increase these programs' efficacy since they allow the identification of molecular markers significantly associated with phenotypes of interest. In this context, the aim here is to identify genomic regions associated with yield, bienniality, and resistance to coffee leaf miner and coffee leaf rust in arabica coffee progenies. Thus, a population (n=597) was evaluated for resistance to biotic stresses and for the eight designed scenarios to study yield and bienniality. A matrix of 4,666 SNPs (Single Nucleotide Polymorphism) was built through Genotyping by Sequencing (GBS). After the genomic association analyses, we identified 12 potential SNPs markers associated with resistance to coffee leaf miner and coffee leaf rust, 32 associated with the eight designed scenarios to study yield and bienniality. Of the 44 SNPs significantly associated with this study's traits, 36 were noted in genomic regions responsible for biological processes related to plant response to biotic and abiotic stresses. In addition, four markers were coincident with yield and traits related to coffee leaf rust resistance. The genomic regions identified in this study can be incorporated into the coffee breeding program, through assisted selection, leading to more efficient breeding strategies in coffee. MenosThe bienniality of production and the incidence of pests and diseases, such as coffee leaf miner and coffee leaf rust, stands out among the factors that limit coffee crop yield. Obtaining cultivars with greater stability in production and resistance to these biotic agents are among the main objectives of coffee breeding programs. In this way, biotechnological tools such as Genomic Wide Association Studies (GWAS) can increase these programs' efficacy since they allow the identification of molecular markers significantly associated with phenotypes of interest. In this context, the aim here is to identify genomic regions associated with yield, bienniality, and resistance to coffee leaf miner and coffee leaf rust in arabica coffee progenies. Thus, a population (n=597) was evaluated for resistance to biotic stresses and for the eight designed scenarios to study yield and bienniality. A matrix of 4,666 SNPs (Single Nucleotide Polymorphism) was built through Genotyping by Sequencing (GBS). After the genomic association analyses, we identified 12 potential SNPs markers associated with resistance to coffee leaf miner and coffee leaf rust, 32 associated with the eight designed scenarios to study yield and bienniality. Of the 44 SNPs significantly associated with this study's traits, 36 were noted in genomic regions responsible for biological processes related to plant response to biotic and abiotic stresses. In addition, four markers were coincident with yield and traits related to co... Mostrar Tudo |
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Thesagro: |
Coffea Arábica; Genoma; Mapa; Stress. |
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Thesaurus Nal: |
Biotic stress; Coffea arabica var. arabica; Genetic resistance; Yield mapping. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/230370/1/Association-mapping-reveals-genomic.pdf
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Marc: |
LEADER 02617naa a2200301 a 4500
001 2139166
005 2022-01-18
008 2021 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s10681-021-02922-9$2DOI
100 1 $aNONATO, J. V. A.
245 $aAssociation mapping reveals genomic regions associated with bienniality and resistance to biotic stresses in arabica coffee.$h[electronic resource]
260 $c2021
520 $aThe bienniality of production and the incidence of pests and diseases, such as coffee leaf miner and coffee leaf rust, stands out among the factors that limit coffee crop yield. Obtaining cultivars with greater stability in production and resistance to these biotic agents are among the main objectives of coffee breeding programs. In this way, biotechnological tools such as Genomic Wide Association Studies (GWAS) can increase these programs' efficacy since they allow the identification of molecular markers significantly associated with phenotypes of interest. In this context, the aim here is to identify genomic regions associated with yield, bienniality, and resistance to coffee leaf miner and coffee leaf rust in arabica coffee progenies. Thus, a population (n=597) was evaluated for resistance to biotic stresses and for the eight designed scenarios to study yield and bienniality. A matrix of 4,666 SNPs (Single Nucleotide Polymorphism) was built through Genotyping by Sequencing (GBS). After the genomic association analyses, we identified 12 potential SNPs markers associated with resistance to coffee leaf miner and coffee leaf rust, 32 associated with the eight designed scenarios to study yield and bienniality. Of the 44 SNPs significantly associated with this study's traits, 36 were noted in genomic regions responsible for biological processes related to plant response to biotic and abiotic stresses. In addition, four markers were coincident with yield and traits related to coffee leaf rust resistance. The genomic regions identified in this study can be incorporated into the coffee breeding program, through assisted selection, leading to more efficient breeding strategies in coffee.
650 $aBiotic stress
650 $aCoffea arabica var. arabica
650 $aGenetic resistance
650 $aYield mapping
650 $aCoffea Arábica
650 $aGenoma
650 $aMapa
650 $aStress
700 1 $aCARVALHO, H. F.
700 1 $aBORGES, K. L. R.
700 1 $aPADILHA, L.
700 1 $aMALUF, M. P.
700 1 $aFRITSCHE NETO, R.
700 1 $aGUERREIRO FILHO, O.
773 $tEuphytica$gv. 217, n. 10, p. 1-19, 2021.
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Café (CNPCa) |
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| Registros recuperados : 54 | |
| 41. |  | FRITSCHE-NETO, R.; MIRANDA, G. V.; VALE, J. C. do; BERMUDEZ, F. P.; LANES, É. C. M.; RESENDE, M. D. V. de; SEDIYAMA, C. S. Seleção genômica ampla para os componentes da eficiência no uso de fósforo em milho. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 6., 2011, Búzios. Panorama atual e perspectivas do melhoramento de plantas no Brasil. [Búzios]: SBMP, 2011. 1CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Florestas. |
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| 42. | | SILVA, G. O. da; PEREIRA, A. da S.; SOUZA, V. Q de; CARVALHO, F. I. F. de; VIEIRA, E. A.; FRITSCHE NETO, R. Seleção para caracteres componentes de aparência e rendimento de tubérculo em plântulas de batata. Horticultura Brasileira, Brasilia, DF, v. 26, n. 3, p. 325-329, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Nacional - A |
| Biblioteca(s): Embrapa Clima Temperado. |
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| 44. | | SILVA, K. J. da; TARDIN, F. D.; SILVA, M. J. da; BERNARDINO, K. da C.; CARVALHO JÚNIOR, G. A. de; NASCIMENTO, S. B. do; FRITSCHE NETO, R. Ensaio de competição entre cultivares de sorgo granífero para região sudeste de Minas Gerais. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 6., 2011, Búzios. Panorama atual e perspectivas do melhoramento de plantas no Brasil. [Búzios]: SBMP, 2011. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 45. | | REIS, G. G. dos; FRITSCHE-NETO, R.; CORNÉLIO, V. M. de O.; REIS, M. de S.; MORAIS, O. P. de; MARQUES, T. da S. Progresso genético para produtividade e peso de 100 grãos em 14 anos do Programa de Melhoramento de Arroz Irrigado de Minas Gerais. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 7., 2013, Uberlândia. Variedade melhorada: a força da nossa agricultura: anais. Viçosa, MG: SBMP, 2013. p. 2760-2763.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 46. | | SILVA, G. H. da; GRANATO, I. S. C.; ALVARES, C. H. A.; CARVALHO, H. F.; BATISTA, L. G.; CAIXETA, D. S.; FRITSCHE NETO, R.; GUIMARAES, L. J. M. Recomendação de variedades de polinização aberta de milho para a região de Viçosa-MG. In: CONGRESSO NACIONAL DE MILHO E SORGO, 29., 2012, Águas de Lindóia. Diversidade e inovações na era dos transgênicos: resumos expandidos. Campinas: Instituto Agronômico; Sete Lagoas: Associação Brasileira de Milho e Sorgo, 2012. p. 2526-2530. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 47. | | MORAIS, P. P. P.; SOUSA, M. B. e; GALLI, G.; ANDRADE, L. R. B. e; FRITSCHE-NETO, R.; OLIVEIRA, A. B. de. Yield components and reproductive, physiological, and root traits used in early selection for nitrogen use efficiency in corn. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 53, n. 5, p. 620-632, maio, 2018. Título em português: Componentes de produção e caracteres reprodutivos, fisiológicos e de raiz usados na seleção precoce para eficiência do uso de nitrogênio em milho.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 48. | | CARVALHO, H. F.; FERRÃO, L. F. V.; GALLI, G.; NONATO, J. V. A.; PADILHA, L.; MALUF, M. P.; RESENDE JR., M. F. R. de; FRITSCHE-NETO, R.; GUERREIRO-FILHO, O. On the accuracy of threshold genomic prediction models for leaf miner and leaf rust resistance in arabica coffee. Tree Genetics & Genomes, v. 19, n. 1, 2023. 10 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Café. |
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| 49. | | SOARES, M. O.; GUIMARAES, L. J. M.; MARRIEL, I. E.; LIMA, R. de O.; CHAVES, L. G.; COUTINHO, P. H.; FRITSCHE NETO, R.; GRANATO, I. S. C.; ALVES, Y. H. Avaliação de testecrosses de milho quanto à eficiência no uso de nitrogênio. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 5., 2009, Vitória. O melhoramento e os novos cenários da agricultura: anais. Vitória: Incaper, 2009. 1 CD-ROM. (Incaper. Documentos, 11).| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 50. | | CROSSA, J.; MONTESINOS-LÓPEZ, O. A.; PÉREZ-RODRÍGUEZ, P.; COSTA-NETO, G.; FRITSCHE-NETO, R.; ORTIZ, R.; MARTINI, J. W. R.; LILLEMO, M.; MONTESINOS-LÓPEZ, A.; JARQUIN, D.; BRESEGHELLO, F.; CUEVAS, J.; RINCENT, R. Genome and environment based prediction models and methods of complex traits incorporating genotype × environment interaction. In: AHMADI, N.; BARTHOLOME, J. (ed.). Genomic prediction of complex traits: methods and protocols. New York: Humana Press, 2022. p. 245-283. (Methods in Molecular Biology).| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 51. | | CARVALHO, H. F.; GALLI, G.; FERRÃO, L. F. V.; NONATO, J. V. A.; PADILHA, L.; MALUF, M. P.; RESENDE JR, M. F. R. de; GUERREIRO FILHO, O.; FRITSCHE-NETO, R. The effect of bienniality on genomic prediction of yield in arabica coffee. Euphytica, v. 216, n. 101, p. 100-111, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Café. |
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| 52. | | MATIAS, F. I.; BARRIOS, S. C. L.; BEARARI, L. M.; MEIRELES, K. G. X.; MATEUS, R. G.; AMARAL, P. N. C. do; ALVES, G. F.; VALLE, C. B. do; FRITSCHE-NETO, R. Contribution of Additive and Dominance Effects on Agronomical and Nutritional Traits, and Multivariate Selection on Urochloa spp. Hybrids. Crop Science, v. 58, n. 6, p. 2444-2458, November/December, 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 53. | | LIMA, R. O. de; FRITSCHE-NETO, R.; VALE, J. C. do; BERMUDEZ, F. P.; LANES, É. C. M.; RESENDE, M. D. V. de; SEDYAMA, C. S.; MIRANDA, G. V. Seleção genômica ampla para os componentes da eficiência no uso de nitrogênio em milho. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 6., 2011, Búzios. Panorama atual e perspectivas do melhoramento de plantas no Brasil. [Búzios]: SBMP, 2011. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Florestas. |
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| 54. | | SANTOS, A.; AMARAL JÚNIOR, A. T. do; FRITSCHE-NETO, R.; KAMPHORST, S. H.; FERREIRA, F. R.; AMARAL, J. F. T. do; VIVAS, J. M. S.; SANTOS, P. H. A. D.; LIMA V. J. de; KHAN, S.; SCHMITT, K. F. M.; LEITE, J. T.; SANTOS JUNIOR, D. R. dos; BISPO, R. B.; SANTOS, T. de O.; OLIVEIRA, U. A. de; GUIMARAES, L. J. M.; RODRIGUEZ, O. Relative importance of gene effects for nitrogen-use efficiency in popcorn. PLoS ONE, v. 14, n. 9, e0222726, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| Registros recuperados : 54 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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