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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
24/03/2021 |
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Data da última atualização: |
03/05/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ALEKCEVETCH, J. C.; PASSIANOTTO, A. L. de L.; FERREIRA, E. G. C.; SANTOS, A. B. dos; SILVA, D. C. G. da; DIAS, W. P.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. |
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Afiliação: |
JEAN CARLOS ALEKCEVETCH, Universidade Estadual de Londrina, UEL, Londrina, PR.; ANDRÉ LUIZ DE LIMA PASSIANOTTO, University of Guelph, Guelph, Canada.; EVERTON GERALDO CAPOTE FERREIRA, Universidade Estadual de Londrina, UEL, Londrina, PR.; ADRIANA BROMBINI DOS SANTOS, CNPSO; DANIELLE CRISTINA GREGORIO DA SILVA, CNPSO; WALDIR PEREIRA DIAS, CNPSO; FRANÇOIS BELZILE, Université Laval, Quebec City, Quebec , Canada.; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO. |
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Título: |
Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
Theoretical and Applied Genetics, v. 134, p. 777-792, 2021. |
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DOI: |
https://doi.org/10.1007/s00122-020-03723-9 |
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Idioma: |
Inglês |
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Notas: |
Artigo de acesso aberto. |
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Conteúdo: |
Key message A locus on chromosome 13, containing multiple TIR-NB-LRR genes and SNPs associated with M. javanica resistance, was identified using a combination of GWAS, resequencing, genetic mapping and expression profiling. Abstract Meloidogyne javanica, a root-knot nematode, is an important problem in soybean-growing areas, leading to severe yield losses. Some accessions have been identified carrying resistance loci to this nematode. In this study, a set of 317 soybean accessions was characterized for resistance to M. javanica. A genome-wide association study was performed using SNPs from genotyping-by-sequencing, and a region of 29.2 kb on chromosome 13 was identified. An analysis of haplotypes showed that SNPs were able to discriminate between susceptible and resistant accessions, with 25 accessions sharing the haplotype associated with resistance. Furthermore, five accessions that exhibited resistance without carrying this haplotype may carry different loci conferring resistance to M. javanica. We also conducted the screening of the SNPs in the USDA soybean germplasm, revealing that several soybean accessions previously reported as resistant to other nematodes also shared the resistance haplotype on chromosome 13. Two SNP-based TaqMan® assays were developed and validated in two panels of soybean cultivars and in biparental populations. In silico analysis of the region associated with resistance identified the occurrence of genes with structural similarity with classical major resistance genes (NBS-LRR genes). Specifically, several nonsynonymous SNPs were observed in Glyma.13g194800 and Glyma.13g194900. The expression profile of these candidate genes demonstrated that the two gene models were up-regulated in the resistance source PI 505,099 after nematode infection. Overall, the SNPs associated with resistance and the genes identified constitute an important tool for introgression of resistance to the root-knot nematode by marker-assisted selection in soybean breeding programs. MenosKey message A locus on chromosome 13, containing multiple TIR-NB-LRR genes and SNPs associated with M. javanica resistance, was identified using a combination of GWAS, resequencing, genetic mapping and expression profiling. Abstract Meloidogyne javanica, a root-knot nematode, is an important problem in soybean-growing areas, leading to severe yield losses. Some accessions have been identified carrying resistance loci to this nematode. In this study, a set of 317 soybean accessions was characterized for resistance to M. javanica. A genome-wide association study was performed using SNPs from genotyping-by-sequencing, and a region of 29.2 kb on chromosome 13 was identified. An analysis of haplotypes showed that SNPs were able to discriminate between susceptible and resistant accessions, with 25 accessions sharing the haplotype associated with resistance. Furthermore, five accessions that exhibited resistance without carrying this haplotype may carry different loci conferring resistance to M. javanica. We also conducted the screening of the SNPs in the USDA soybean germplasm, revealing that several soybean accessions previously reported as resistant to other nematodes also shared the resistance haplotype on chromosome 13. Two SNP-based TaqMan® assays were developed and validated in two panels of soybean cultivars and in biparental populations. In silico analysis of the region associated with resistance identified the occurrence of genes with structural similarity with classical ... Mostrar Tudo |
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Thesagro: |
Galha; Genoma; Meloidogyne Javanica; Nematóide; Resistência; Soja. |
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Thesaurus Nal: |
Genome-wide association study; Resistance mechanisms; Root-knot nematodes; Soybeans. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/222104/1/Alekcevetch2021-Article-Genome-wideAssociationStudyFor.pdf
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/222143/1/Alekcevetch2021-Article-Genome-wideAssociationStudyFor.pdf
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Marc: |
LEADER 03125naa a2200361 a 4500
001 2130887
005 2021-05-03
008 2021 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s00122-020-03723-9$2DOI
100 1 $aALEKCEVETCH, J. C.
245 $aGenome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean.$h[electronic resource]
260 $c2021
500 $aArtigo de acesso aberto.
520 $aKey message A locus on chromosome 13, containing multiple TIR-NB-LRR genes and SNPs associated with M. javanica resistance, was identified using a combination of GWAS, resequencing, genetic mapping and expression profiling. Abstract Meloidogyne javanica, a root-knot nematode, is an important problem in soybean-growing areas, leading to severe yield losses. Some accessions have been identified carrying resistance loci to this nematode. In this study, a set of 317 soybean accessions was characterized for resistance to M. javanica. A genome-wide association study was performed using SNPs from genotyping-by-sequencing, and a region of 29.2 kb on chromosome 13 was identified. An analysis of haplotypes showed that SNPs were able to discriminate between susceptible and resistant accessions, with 25 accessions sharing the haplotype associated with resistance. Furthermore, five accessions that exhibited resistance without carrying this haplotype may carry different loci conferring resistance to M. javanica. We also conducted the screening of the SNPs in the USDA soybean germplasm, revealing that several soybean accessions previously reported as resistant to other nematodes also shared the resistance haplotype on chromosome 13. Two SNP-based TaqMan® assays were developed and validated in two panels of soybean cultivars and in biparental populations. In silico analysis of the region associated with resistance identified the occurrence of genes with structural similarity with classical major resistance genes (NBS-LRR genes). Specifically, several nonsynonymous SNPs were observed in Glyma.13g194800 and Glyma.13g194900. The expression profile of these candidate genes demonstrated that the two gene models were up-regulated in the resistance source PI 505,099 after nematode infection. Overall, the SNPs associated with resistance and the genes identified constitute an important tool for introgression of resistance to the root-knot nematode by marker-assisted selection in soybean breeding programs.
650 $aGenome-wide association study
650 $aResistance mechanisms
650 $aRoot-knot nematodes
650 $aSoybeans
650 $aGalha
650 $aGenoma
650 $aMeloidogyne Javanica
650 $aNematóide
650 $aResistência
650 $aSoja
700 1 $aPASSIANOTTO, A. L. de L.
700 1 $aFERREIRA, E. G. C.
700 1 $aSANTOS, A. B. dos
700 1 $aSILVA, D. C. G. da
700 1 $aDIAS, W. P.
700 1 $aBELZILE, F.
700 1 $aABDELNOOR, R. V.
700 1 $aMARCELINO-GUIMARÃES, F. C.
773 $tTheoretical and Applied Genetics$gv. 134, p. 777-792, 2021.
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Soja (CNPSO) |
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Biblioteca |
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Origem |
Tipo/Formato |
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Registro |
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| Registros recuperados : 48 | |
| 41. |  | FERREIRA, E. G.; LEMOS, E. E. P. de; SOUZA, F. X. de; LOURENÇO, I. P.; LEDERMAN, I. E; BEZERRA, J. E. F.; SILVA JÚNIOR, J. F. da; BARROS, L. de M.; RUFINO, M. do S. M.; OLIVEIRA, M. E. de; MENDONÇA, R. M. N.; ALVES, R. E.; ARAÚJO, R. R. de; SILVA, S. de M.; SOUZA, V. A. B. de. Frutíferas. In: SAMPAIO, E. V. S. B.; PAREYN, F. G. C.; FIGUEIRÔA, J. M. de; SANTOS JUNIOR, A. G. (Ed.). Espécies da flora nordestina de importância econômica potencial. Recife, Associação Plantas do Nordeste, 2005. p.49-100.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Meio-Norte. |
|   |
| 42. | | FERREIRA, E. G. C.; AOYAGI, L. N.; BISSI, R. B.; SILVA, D. L. L. F.; AVELINO, B. B.; BARROS, L. G.; CASTANHO, F. M.; LOPES-CAITAR, V. S.; SILVA, D. C. G. da; KUWAHARA, M. K.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Identification of SNP markers tightly linked to RPP5 allele from PI 200487. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 10., 2019, Águas de Lindóia. [Anais...]. [S. l.]: SBMP, 2019. e-book. p. 60.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 43. | | SILVA JUNIOR, J. F. da; OLIVEIRA NETO, M. B. de; BARROS, A. H. C.; OLIVEIRA, F. M. M. de; RODRIGUES, R. F. de A.; MOTA, D. M. da; MENINO, I. B.; ARAUJO, I. A. de; LIMA, E. de P.; SCHMITZ, H.; FERREIRA, E. G.; GUERRA, A. G. Prospecção tecnológica por meio da análise pedológica, climática e da distribuição das áreas cultivadas com mangabeiras nos Estados de Sergipe, Paraíba e Rio Grande do Norte. Aracaju: Embrapa Tabuleiros Costeiros, 2023. 93 p. (Embrapa Tabuleiros Costeiros. Documentos, 248). ODS 2.| Biblioteca(s): Embrapa Amazônia Oriental; Embrapa Solos; Embrapa Tabuleiros Costeiros. |
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| 44. | | MELEM JUNIOR, N. J.; BRITO, O. R.; FRANCHINI, J. C.; RICHART, A.; CARNEIRO, C. E. A.; RODRIGUES, L. A.; FERREIRA, E. G.; FUJIMURA, A. M.; FONSECA, I. C. B.; CAMOLEZZI, G. B.; TREVISAN, A. T.; GUEDES, M. C.; BRITO, R. M. Soil microbial biomass in burned area cultivated with corn. In: INTERNATIONAL SYMPOSIUM ON ORGANIC MATTER DYNAMICS IN AGRO-ECOSYSTEMS, 2007, Poitiers. Proceedings... Poitiers: INRA, 2007. p. 311-312.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Amapá. |
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| 45. | | SILVA, D. L. L. F.; FERREIRA, E. G. C.; BISSI, R. B.; AVELINO, B. B.; CHICOWSKI, A. S.; SILVA, D. C. G. da; SANTOS, A. B. dos; OLIVEIRA, M. F. de; ARIAS, C. A. A.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. SNPs validation for marker assisted selection of resistance to asian soybean rust. In: BRAZILIAN BIOTECHNOLOGY CONGRESS, 7.; BIOTECHNOLOGY IBERO-AMERICAN CONGRESS, 2., 2018, Brasília, DF. Proceedings... Brasília, DF: SBBiotec, 2018. não paginado.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 46. | | BARROS, L. G.; AVELINO, B. B.; SILVA, D. C. G. da; FERREIRA, E. G. C.; CASTANHO, F. M.; FERREIRA, M. E.; LOPES-CAITAR, V. S.; MARIN, S. R. R.; ARIAS, C. A. A.; LOPES, I. de O. N.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Mapping of a soybean rust resistance in PI 594756 at the Rpp1 locus. Molecular Breeding, v. 43, article 12, 2023. 17 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia; Embrapa Soja. |
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| 47. | | BUENO, T. V.; FONTES, P. P.; ABE, V. Y.; UTIYAMA, A. S.; SENRA, R. L.; OLIVEIRA, L. S.; SANTOS, A. B. dos; FERREIRA, E. G. C.; DARBEN, L. M.; OLIVEIRA, A. B. de; ABDELNOOR, R. V.; WHITHAM, S. A.; FIETTO, L. G.; MARCELINO-GUIMARÃES, F. C. A Phakopsora pachyrhizi Effector Suppresses PAMP-Triggered Immunity and Interacts with a Soybean Glucan Endo-1,3-β-Glucosidase to Promote Virulence. MOLECULAR PLANT-MICROBE INTERACTIONS, v. 35, n. 9, p. 779-790, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 48. | | GUPTA, Y. K.; MARCELINO-GUIMARÃES, F. C.; LORRAIN, C.; FARMER, A.; HARIDAS, S.; FERREIRA, E. G. C.; LOPES-CAITAR, V. S.; OLIVEIRA, L. S.; MORIN, E.; WIDDISON, S.; CAMERON, C.; INOUE, Y.; THOR, K.; ROBINSON, K.; DRULA, E.; HENRISSAT, B.; LABUTTI, K.; BINI, A. M. R.; PAGET, E.; SINGAN, V.; DAUM, C.; DORME, C.; HOEK, M. V.; JANSSEN, A.; CHANDAT, L.; TARRIOTTE, Y.; RICHARDON, J.; MELO, B. do V. A.; WITTENBERG, A. H. J.; SCHNEIDERS, H.; PEYRARD, S.; ZANARDO, L. G.; HOLTMAN, V. C.; COULOMBIER-CHAUVEL, F.; LINK, T. I.; BALMER, D.; MÜLLER, A. N.; KIND, S.; BOHNERT, S.; WIRTZ, L.; CHEN, C.; YAN, M.; NG, V.; GAUTIER, P.; MEYER, M. C.; VOEGELE, R. T.; LIU, Q.; GRIGORIEV, I. V.; CONRATH, U.; BROMMONSCHENKEL, S. H.; LOEHRER, M.; SCHAFFRATH, U.; SIRVEN, C.; SCALLIET, G.; DUPLESSIS, S.; ESSE, H. P. van. Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi. Nature Communications, v. 14, 1835, 2023. 16 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 48 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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