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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura; Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
18/06/2013 |
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Data da última atualização: |
08/03/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PASSOS, M. A. N.; CRUZ, V. O. de; EMEDIATO, F. L.; TEIXEIRA, C. C. de; AZEVEDO, V. C. R.; BRASILEIRO, A. C. M.; AMORIM, E. P.; FERREIRA, C. F.; MARTINS, N. F.; TOGAWA, R. C.; PAPPAS JÚNIOR, G. J.; SILVA JUNIOR, O. B. da; MILLER, R. T N. G. |
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Afiliação: |
MARCO A N PASSOS, UNB; VIVIANE OLIVEIRA DE CRUZ, UNB; FLAVIA L EMEDIATO, UNB; CRISTIANE CAMARGO DE TEIXEIRA, UCB; VANIA CRISTINA RENNO AZEVEDO, CENARGEN; ANA CRISTINA MIRANDA BRASILEIRO, CENARGEN; EDSON PERITO AMORIM, CNPMF; CLAUDIA FORTES FERREIRA, CNPMF; NATALIA FLORENCIO MARTINS, CENARGEN; ROBERTO COITI TOGAWA, CENARGEN; GEORGIOS J PAPPAS JÚNIOR, UNB; ORZENIL BONFIM DA SILVA JUNIOR, CENARGEN; ROBERT N. G. MILLER, UNB. |
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Título: |
Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola: gene assembly, annotation and marker development. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
BMC Genomics, v.14, n.78, 2013. |
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Idioma: |
Inglês |
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Conteúdo: |
Background: Although banana (Musa sp.) is an important edible crop, contributing towards poverty alleviation and food security, limited transcriptome datasets are available for use in accelerated molecular-based breeding in this genus. 454 GS-FLX Titanium technology was employed to determine the sequence of gene transcripts in genotypes of Musa acuminata ssp. burmannicoides Calcutta 4 and M. acuminata subgroup Cavendish cv. Grande Naine, contrasting in resistance to the fungal pathogen Mycosphaerella musicola, causal organism of Sigatoka leaf spot disease. To enrich for transcripts under biotic stress responses, full length-enriched cDNA libraries were prepared from whole plant leaf materials, both uninfected and artificially challenged with pathogen conidiospores. Results: The study generated 846,762 high quality sequence reads, with an average length of 334 bp and totaling 283 Mbp. De novo assembly generated 36,384 and 35,269 unigene sequences for M. acuminata Calcutta 4 and Cavendish Grande Naine, respectively. A total of 64.4% of the unigenes were annotated through Basic Local Alignment Search Tool (BLAST) similarity analyses against public databases. Assembled sequences were functionally mapped to Gene Ontology (GO) terms, with unigene functions covering a diverse range of molecular functions, biological processes and cellular components. Genes from a number of defense-related pathways were observed in transcripts from each cDNA library. Over 99% of contig unigenes mapped to exon regions in the reference M. acuminata DH Pahang whole genome sequence. A total of 4068 genic-SSR loci were identified in Calcutta 4 and 4095 in Cavendish Grande Naine. A subset of 95 potential defense-related gene-derived simple sequence repeat (SSR) loci were validated for specific amplification and polymorphism across M. acuminata accessions. Fourteen loci were polymorphic, with alleles per polymorphic locus ranging from 3 to 8 and polymorphism information content ranging from 0.34 to 0.82. Conclusions: A large set of unigenes were characterized in this study for both M. acuminata Calcutta 4 and Cavendish Grande Naine, increasing the number of public domain Musa ESTs. This transcriptome is an invaluable resource for furthering our understanding of biological processes elicited during biotic stresses in Musa. Gene-based markers will facilitate molecular breeding strategies, forming the basis of genetic linkage mapping and analysis of quantitative trait loci. MenosBackground: Although banana (Musa sp.) is an important edible crop, contributing towards poverty alleviation and food security, limited transcriptome datasets are available for use in accelerated molecular-based breeding in this genus. 454 GS-FLX Titanium technology was employed to determine the sequence of gene transcripts in genotypes of Musa acuminata ssp. burmannicoides Calcutta 4 and M. acuminata subgroup Cavendish cv. Grande Naine, contrasting in resistance to the fungal pathogen Mycosphaerella musicola, causal organism of Sigatoka leaf spot disease. To enrich for transcripts under biotic stress responses, full length-enriched cDNA libraries were prepared from whole plant leaf materials, both uninfected and artificially challenged with pathogen conidiospores. Results: The study generated 846,762 high quality sequence reads, with an average length of 334 bp and totaling 283 Mbp. De novo assembly generated 36,384 and 35,269 unigene sequences for M. acuminata Calcutta 4 and Cavendish Grande Naine, respectively. A total of 64.4% of the unigenes were annotated through Basic Local Alignment Search Tool (BLAST) similarity analyses against public databases. Assembled sequences were functionally mapped to Gene Ontology (GO) terms, with unigene functions covering a diverse range of molecular functions, biological processes and cellular components. Genes from a number of defense-related pathways were observed in transcripts from each cDNA library. Over 99% of contig unigenes mapp... Mostrar Tudo |
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Thesagro: |
Banana; Fungo; Musa Acuminata; Mycosphaerella Musicola. |
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Thesaurus Nal: |
Microsatellite repeats; Transcriptome. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/156239/1/1471-2164-14-78.pdf
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Marc: |
LEADER 03504naa a2200337 a 4500
001 1964212
005 2023-03-08
008 2013 bl uuuu u00u1 u #d
100 1 $aPASSOS, M. A. N.
245 $aAnalysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola$bgene assembly, annotation and marker development.$h[electronic resource]
260 $c2013
520 $aBackground: Although banana (Musa sp.) is an important edible crop, contributing towards poverty alleviation and food security, limited transcriptome datasets are available for use in accelerated molecular-based breeding in this genus. 454 GS-FLX Titanium technology was employed to determine the sequence of gene transcripts in genotypes of Musa acuminata ssp. burmannicoides Calcutta 4 and M. acuminata subgroup Cavendish cv. Grande Naine, contrasting in resistance to the fungal pathogen Mycosphaerella musicola, causal organism of Sigatoka leaf spot disease. To enrich for transcripts under biotic stress responses, full length-enriched cDNA libraries were prepared from whole plant leaf materials, both uninfected and artificially challenged with pathogen conidiospores. Results: The study generated 846,762 high quality sequence reads, with an average length of 334 bp and totaling 283 Mbp. De novo assembly generated 36,384 and 35,269 unigene sequences for M. acuminata Calcutta 4 and Cavendish Grande Naine, respectively. A total of 64.4% of the unigenes were annotated through Basic Local Alignment Search Tool (BLAST) similarity analyses against public databases. Assembled sequences were functionally mapped to Gene Ontology (GO) terms, with unigene functions covering a diverse range of molecular functions, biological processes and cellular components. Genes from a number of defense-related pathways were observed in transcripts from each cDNA library. Over 99% of contig unigenes mapped to exon regions in the reference M. acuminata DH Pahang whole genome sequence. A total of 4068 genic-SSR loci were identified in Calcutta 4 and 4095 in Cavendish Grande Naine. A subset of 95 potential defense-related gene-derived simple sequence repeat (SSR) loci were validated for specific amplification and polymorphism across M. acuminata accessions. Fourteen loci were polymorphic, with alleles per polymorphic locus ranging from 3 to 8 and polymorphism information content ranging from 0.34 to 0.82. Conclusions: A large set of unigenes were characterized in this study for both M. acuminata Calcutta 4 and Cavendish Grande Naine, increasing the number of public domain Musa ESTs. This transcriptome is an invaluable resource for furthering our understanding of biological processes elicited during biotic stresses in Musa. Gene-based markers will facilitate molecular breeding strategies, forming the basis of genetic linkage mapping and analysis of quantitative trait loci.
650 $aMicrosatellite repeats
650 $aTranscriptome
650 $aBanana
650 $aFungo
650 $aMusa Acuminata
650 $aMycosphaerella Musicola
700 1 $aCRUZ, V. O. de
700 1 $aEMEDIATO, F. L.
700 1 $aTEIXEIRA, C. C. de
700 1 $aAZEVEDO, V. C. R.
700 1 $aBRASILEIRO, A. C. M.
700 1 $aAMORIM, E. P.
700 1 $aFERREIRA, C. F.
700 1 $aMARTINS, N. F.
700 1 $aTOGAWA, R. C.
700 1 $aPAPPAS JÚNIOR, G. J.
700 1 $aSILVA JUNIOR, O. B. da
700 1 $aMILLER, R. T N. G.
773 $tBMC Genomics$gv.14, n.78, 2013.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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| Registros recuperados : 10 | |
| 1. |  | EMEDIATO, F. L.; PASSOS, M. A. N.; TEIXEIRA, C. de C.; PAPPAS JUNIOR, G. J.; MILLER, R. N. G. Análise de expressão de genes análogos de resistência em musa acuminata durante as interações compatíveis e incompatíveis com Mycosphaerella musicola. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 45., 2012, Manaus. Fito 2012. Tropical Plant Pathology, Brasília, DF, v. 37, 2012. Suplemento. Resumo 708. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 2. | | EMEDIATO, F. L.; PASSOS, M. A. N.; NUNES, F. A. C.; TEIXEIRA, C. C.; PAPPAS JUNIOR, G. J.; MILLER, R. N. G. Caracterização de genes análogos de resistência em cultivares de Musa acuminata contrastantes em resistência à estresses bióticos. In: CONGRESSO BRASILEIRO DE GENÉTICA, 54., 2008, Salvador. Resumos... Salvador: SBG, 2008. p. 22.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 3. | | EMEDIATO, F. L.; PASSOS, M. A. N.; TEIXEIRA, C. C.; PAPPAS JUNIOR, G. J.; MARTINS, N. F.; MILLER, R. N. G. Caracterização de genes análogos de resistência (RGAs) em cultivares de Musa acuminata contrastantes em resistência a estresses bióticos. Tropical Plant Pathology, Brasília, DF, v. 34, p. X261, out. 2009. Suplemento. Edição dos Resumos do XLII do Congresso Brasileiro de Fitopatologia, Rio de Janeiro, RJ, out. 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 4. | | PASSOS, M. A. N.; PAPPAS JUNIOR, G. J.; EMEDIATO, F. L.; MARTINS, N. F.; TOGAWA, R. C.; CIAMPI, A. Y.; MILLER, R. N. G. A caracterização de genes e desenvolvimento de marcadores moleculares na interação entre Musa acuminata e Mycosphaerella fijensis. Tropical Plant Pathology, Brasília, DF, v. 34, p. X260, out. 2009. Suplemento. Edição dos Resumos do XLII do Congresso Brasileiro de Fitopatologia, Rio de Janeiro, RJ, out. 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | PASSOS, M. A. N.; PAPPAS JUNIOR, G. J.; SILVA JUNIOR, O. B. da; EMEDIATO, F. L.; TEIXEIRA, C. C.; MILLER, R. N. G. Identificação e caracterização de components genéticos de resistência a Mycosphaerella musicola em Musa acuminata. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 45., 2012, Manaus. Fito 2012. Tropical Plant Pathology, Brasília, DF, v. 37, 2012. Suplemento. Resumo 470. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 6. | | MILLER, R. N. G.; PASSOS, M. A. N.; EMEDIATO, F. L.; TEIXEIRA, C. C.; SILVA JUNIOR, O. B. da; PAPPAS JUNIOR, G. J. Gene expression analysis in Musa acuminata-Mycosphaerella interactions. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 45., 2012, Manaus. Fito 2012. Tropical Plant Pathology, Brasília, DF, v. 37, 2012. Suplemento. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 7. | | PASSOS, M. A. N.; MENEZES, N. N. P.; EMEDIATO, F. L.; VILARINHOS, A. D.; SOUZA JÚNIOR, M. T.; PAPPAS JÚNIOR, G. J.; MILLER, R. N. G.; CIAMPI, A. Y. Caracterização de marcadores microsatélites derivados de sequências de BAC e EST em Musa acuminata. In: CONGRESSO BRASILEIRO DE GENÉTICA, 54., 2008, Salvador. Resumos... Salvador: SBG, 2008. P. 275.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | PASSOS, M. A. N.; CRUZ, V. O. de; EMEDIATO, F. L.; TEIXEIRA, C. C. de; AZEVEDO, V. C. R.; BRASILEIRO, A. C. M.; AMORIM, E. P.; FERREIRA, C. F.; MARTINS, N. F.; TOGAWA, R. C.; PAPPAS JÚNIOR, G. J.; SILVA JUNIOR, O. B. da; MILLER, R. T N. G. Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola: gene assembly, annotation and marker development. BMC Genomics, v.14, n.78, 2013.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura; Embrapa Recursos Genéticos e Biotecnologia. |
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| 9. | | PASSOS, M. A. N.; CRUZ, V. de O.; EMEDIATO, F. L.; TEIXEIRA, C. de C.; SOUZA JR. M. L T.; MATSUMOTO, T.; AZEVEDO, V. C. R.; FERREIRA, C. F.; AMORIM, E. P.; FIGUEIREDO, L. F. de A.; MARTINS, N. F.; CAVALCANTE, M. de J. B.; BAURENS, F.-C.; SILVA JUNIOR, O. B. da; PAPPAS JUNIOR, G. J.; PIGNOLET, L.; ABADIE, C.; CIAMPI, A. Y.; PIFFANELLI, P.; MILLER, R. N. G. Development of expressed sequence tag and EST-SSR marker resources for Musa acuminata. AOB Plants, 2012. (Open Access).| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 10. | | PASSOS, M. A. N.; CRUZ, V. de O.; EMEDIATO, F. L.; TEIXEIRA, C. de C.; SOUZA JUNIOR, M. T.; MATSUMOTO, T.; AZEVEDO, V. C. R.; FERREIRA, C. F.; AMORIM, E. P.; FIGUEIREDO, L. F. de A.; MARTINS, N. F.; CAVALCANTE, M. de J. B.; BAURENS, F. C.; SILVA JUNIOR, O. B. da; PAPPAS JUNIOR, G. J.; PIGNOLET, L.; ABADIE, C.; CIAMPI, A. Y.; PIFFANELLI, P.; MILLER, R. N. G. Development of expressed sequence tag and expressed sequence tag-simple sequence repeat marker resources for Musa acuminata. AoB Plants, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Acre; Embrapa Mandioca e Fruticultura; Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 10 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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