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![](/consulta/web/img/deny.png) | Acesso ao texto completo restrito à biblioteca da Embrapa Meio Ambiente. Para informações adicionais entre em contato com cnpma.biblioteca@embrapa.br. |
Registro Completo |
Biblioteca(s): |
Embrapa Meio Ambiente. |
Data corrente: |
08/12/2017 |
Data da última atualização: |
09/03/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
OTTONI, J. R.; CABRAL, L.; SOUSA, S. T. P. de; LACERDA JUNIOR, G. V.; DOMINGOS, D. F.; SOARES JUNIOR, F. L.; SILVA, M. C. P. da; MARCON, J.; DIAS, A. C. F.; MELO, I. S. de; SOUZA, A. P. de; ANDREOTE, F. D.; OLIVEIRA, V. M. de. |
Afiliação: |
JULIA RONZELLA OTTONI, UNICAMP; LUCELIA CABRAL, UNICAMP; SANDERSON TARCISO PEREIRA DE SOUSA, UNICAMP; GILENO VIEIRA LACERDA JUNIOR, UNICAMP; DANIELA FERREIRA DOMINGOS, UNICAMP; FABIO LINO SOARES JUNIOR, UNICAMP; MYLENNE CALCIOLARI PINHEIRO DA SILVA, ESALQ-USP; JOELMA MARCON, ESALQ-USP; ARMANDO CAVALCANTI FRANCO DIAS, ESALQ-USP; ITAMAR SOARES DE MELO, CNPMA; ANETE PEREIRA DE SOUZA, UNICAMP; FERNANDO DINI ANDREOTE, ESALQ-USP; VALERIA MAIA DE OLIVEIRA, UNICAMP. |
Título: |
Functional metagenomics of oil-impacted mangrove sediments reveals high abundance of hydrolases of biotechnological interest. |
Ano de publicação: |
2017 |
Fonte/Imprenta: |
World Journal of Microbiology and Biotechnology, v. 33, n. 7, p. 1-13, 2017. Article 141. |
DOI: |
http://dx.doi.org/10.1007/s11274-017-2307-5 |
Idioma: |
Inglês |
Conteúdo: |
Mangroves are located in coastal wetlands and are susceptible to the consequences of oil spills, what may threaten the diversity of microorganisms responsible for the nutrient cycling and the consequent ecosystem functioning. Previous reports show that high concentration of oil favors the incidence of epoxide hydrolases and haloalkane dehal- ogenases in mangroves. This finding has guided the goals of this study in an attempt to broaden the analysis to other hydrolases and thereby verify whether oil contamination interferes with the prevalence of particular hydrolases and their assigned microorganisms. For this, an in-depth survey of the taxonomic and functional microbial diversity recov- ered in a fosmid library (Library_Oil Mgv) constructed from oil-impacted Brazilian mangrove sediment was car- ried out. Fosmid DNA of the whole library was extracted and submitted to Illumina HiSeq sequencing. The resulting Library Oil_Mgv dataset was further compared with those obtained by direct sequencing of environmental DNA from Brazilian mangroves (from distinct regions and affected by distinct sources of contamination), focusing on hydro- lases with potential use in biotechnological processes. The most abundant hydrolases found were proteases, esterases and amylases, with similar occurrence profile in all data- sets. The main microbial groups harboring such hydrolase- encoding genes were distinct in each mangrove, and in the fosmid library these enzymes were mainly assigned to Chloroflexaceae (for amylases), Planctomycetaceae (for esterases) and Bradyrhizobiaceae (for proteases). Assem- bly and analysis of Library_Oil Mgv reads revealed three potentially novel enzymes, one epoxide hydrolase, one xylanase and one amylase, to be further investigated via heterologous expression assays. MenosMangroves are located in coastal wetlands and are susceptible to the consequences of oil spills, what may threaten the diversity of microorganisms responsible for the nutrient cycling and the consequent ecosystem functioning. Previous reports show that high concentration of oil favors the incidence of epoxide hydrolases and haloalkane dehal- ogenases in mangroves. This finding has guided the goals of this study in an attempt to broaden the analysis to other hydrolases and thereby verify whether oil contamination interferes with the prevalence of particular hydrolases and their assigned microorganisms. For this, an in-depth survey of the taxonomic and functional microbial diversity recov- ered in a fosmid library (Library_Oil Mgv) constructed from oil-impacted Brazilian mangrove sediment was car- ried out. Fosmid DNA of the whole library was extracted and submitted to Illumina HiSeq sequencing. The resulting Library Oil_Mgv dataset was further compared with those obtained by direct sequencing of environmental DNA from Brazilian mangroves (from distinct regions and affected by distinct sources of contamination), focusing on hydro- lases with potential use in biotechnological processes. The most abundant hydrolases found were proteases, esterases and amylases, with similar occurrence profile in all data- sets. The main microbial groups harboring such hydrolase- encoding genes were distinct in each mangrove, and in the fosmid library these enzymes were mainly assigned to Chlorof... Mostrar Tudo |
Palavras-Chave: |
Bioprospecting; Fosmid library; Mangrove. |
Thesagro: |
Hidrolase; Mangue; Microrganismo; Petróleo; Poluição da água. |
Thesaurus Nal: |
Hydrolases. |
Categoria do assunto: |
S Ciências Biológicas |
Marc: |
LEADER 02976naa a2200385 a 4500 001 2081939 005 2018-03-09 008 2017 bl uuuu u00u1 u #d 024 7 $ahttp://dx.doi.org/10.1007/s11274-017-2307-5$2DOI 100 1 $aOTTONI, J. R. 245 $aFunctional metagenomics of oil-impacted mangrove sediments reveals high abundance of hydrolases of biotechnological interest.$h[electronic resource] 260 $c2017 520 $aMangroves are located in coastal wetlands and are susceptible to the consequences of oil spills, what may threaten the diversity of microorganisms responsible for the nutrient cycling and the consequent ecosystem functioning. Previous reports show that high concentration of oil favors the incidence of epoxide hydrolases and haloalkane dehal- ogenases in mangroves. This finding has guided the goals of this study in an attempt to broaden the analysis to other hydrolases and thereby verify whether oil contamination interferes with the prevalence of particular hydrolases and their assigned microorganisms. For this, an in-depth survey of the taxonomic and functional microbial diversity recov- ered in a fosmid library (Library_Oil Mgv) constructed from oil-impacted Brazilian mangrove sediment was car- ried out. Fosmid DNA of the whole library was extracted and submitted to Illumina HiSeq sequencing. The resulting Library Oil_Mgv dataset was further compared with those obtained by direct sequencing of environmental DNA from Brazilian mangroves (from distinct regions and affected by distinct sources of contamination), focusing on hydro- lases with potential use in biotechnological processes. The most abundant hydrolases found were proteases, esterases and amylases, with similar occurrence profile in all data- sets. The main microbial groups harboring such hydrolase- encoding genes were distinct in each mangrove, and in the fosmid library these enzymes were mainly assigned to Chloroflexaceae (for amylases), Planctomycetaceae (for esterases) and Bradyrhizobiaceae (for proteases). Assem- bly and analysis of Library_Oil Mgv reads revealed three potentially novel enzymes, one epoxide hydrolase, one xylanase and one amylase, to be further investigated via heterologous expression assays. 650 $aHydrolases 650 $aHidrolase 650 $aMangue 650 $aMicrorganismo 650 $aPetróleo 650 $aPoluição da água 653 $aBioprospecting 653 $aFosmid library 653 $aMangrove 700 1 $aCABRAL, L. 700 1 $aSOUSA, S. T. P. de 700 1 $aLACERDA JUNIOR, G. V. 700 1 $aDOMINGOS, D. F. 700 1 $aSOARES JUNIOR, F. L. 700 1 $aSILVA, M. C. P. da 700 1 $aMARCON, J. 700 1 $aDIAS, A. C. F. 700 1 $aMELO, I. S. de 700 1 $aSOUZA, A. P. de 700 1 $aANDREOTE, F. D. 700 1 $aOLIVEIRA, V. M. de 773 $tWorld Journal of Microbiology and Biotechnology$gv. 33, n. 7, p. 1-13, 2017. Article 141.
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Embrapa Meio Ambiente (CNPMA) |
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Registros recuperados : 6 | |
1. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | DOMINGOS, D. F.; OTTONI, J. R.; SILVA, C. C.; DELLAGNEZZE, B. M.; VASCONCELLOS, S. P.; MELO, I. S. de; OLIVEIRA, V. M. Prospecção de novos biossurfactantes a partir da biblioteca metagenômica de manguezal utilizando High Throughput Screening (HTS). In: CONGRESSO BRASILEIRO DE MICROBIOLOGIA, 26., 2011, Foz do Iguaçu. Anais... Foz do Iguaçu: Sociedade Brasileira de Microbiologia, 2011. Resumo 1250-1.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Meio Ambiente. |
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2. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | LACERDA JÚNIOR, G. V.; NORONHA, M. F.; SOUSA, S. T. P. de; CABRAL, L.; DOMINGOS, D. F.; SÁBER, M. L.; MELO, I. S. de; OLIVEIRA, V. M. Potential of semiarid soil from Caatinga biome as a novel source for mining lignocellulose-degrading enzymes. FEMS Microbiology Ecology, v. 93, n. 2, p. 1-15, 2017.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Meio Ambiente. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Acesso restrito ao objeto digital](/consulta/web/img/lock.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
3. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | DOMINGOS, D. F.; DELLAGNEZZE, B. M.; GREENFIELD, P.; REYES, L. F.; MELO, I. S. de; MIDGLEY, D. J.; OLIVEIRA, V. M. de. Draft genome sequence of Bacillus pumilus CCMA-560, isolated from an oil-contaminated mangrove swamp. Genome Announcements, Washington, DC, v. 1, n. 5, p. e00707-13, 2013.Tipo: Artigo em Periódico Indexado | Circulação/Nível: C - 0 |
Biblioteca(s): Embrapa Meio Ambiente. |
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4. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | DOMINGOS, D. F.; DELLAGNEZZE, B. M.; GREENFIELD, P.; REYES, L. R.; MELO, I. S. de; MIDGLEY, D. J.; OLIVEIRA, V. C. de. Draft genome sequence of the biosurfactant-producing bacterium Gordonia amicalis strain CCMA-559, isolated from petroleum-impacted sediment. Genome Announcements, Washington, DC, v. 1, n. 6, p. e00894-13, 2013.Tipo: Artigo em Periódico Indexado | Circulação/Nível: C - 0 |
Biblioteca(s): Embrapa Meio Ambiente. |
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5. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | DOMINGOS, D. F.; FARIA, A. F. de; GALAVERNA, R. S.; EBERLIN, M. N.; GREENFIELD, P.; ZUCCHI, T. D.; MELO, I. S. de; TRAN-DINH, N.; MIDGLEY, D.; OLIVEIRA, V. M. Genomic and chemical insights into biosurfactant production by the mangrove-derived strain Bacillus safensis CCMA-560. Applied Microbiology and Biotechnology, Heidelberg, v. 99, n. 7, p. 3155-3167, 2015.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Meio Ambiente. |
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6. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | OTTONI, J. R.; CABRAL, L.; SOUSA, S. T. P. de; LACERDA JUNIOR, G. V.; DOMINGOS, D. F.; SOARES JUNIOR, F. L.; SILVA, M. C. P. da; MARCON, J.; DIAS, A. C. F.; MELO, I. S. de; SOUZA, A. P. de; ANDREOTE, F. D.; OLIVEIRA, V. M. de. Functional metagenomics of oil-impacted mangrove sediments reveals high abundance of hydrolases of biotechnological interest. World Journal of Microbiology and Biotechnology, v. 33, n. 7, p. 1-13, 2017. Article 141.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Meio Ambiente. |
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Registros recuperados : 6 | |
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Nenhum registro encontrado para a expressão de busca informada. |
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