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 | Acesso ao texto completo restrito à biblioteca da Embrapa Mandioca e Fruticultura. Para informações adicionais entre em contato com cnpmf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
25/03/2008 |
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Data da última atualização: |
05/07/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS-MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. |
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Afiliação: |
Magali Lescot, CIRAD/IBSM; Pietro Piffanelli, CIRAD/PADANO; Ana Y. Ciampi, CENARGEN; Manuel Ruiz, CIRAD; Guillaume Blanc, IGS; Jim Leebens-Mack, University of Georgia; Felipe R. da Silva, CENARGEN; Candice M. R. Santos, CENARGEN; Angélique D'Hont, CIRAD; Olivier Garsmeur, CIRAD; Alberto Duarte Vilarinhos, CNPMF; Hiroyuki Kanamori, RGP; Takashi Matsumoto, RGP; Catherine M. Ronning, J. Craig Venter Institute; Foo Cheung, J. Craig Venter Institute; Brian J. Haas, J. Craig Venter Institute; Ryan Althoff, J. Craig Venter Institute; Tammy Arbogast, J. Craig Venter Institute; Erin Hine, J. Craig Venter Institute; Georgios J. Pappas Junior, UCB; Takuji Sasaki, RGP; Manoel T. Souza Junior, CENARGEN; Robert N. G. Miller, UCB; Jean-Christophe Glaszmann, CIRAD; Christopher D. Town, J. Craig Venter Institute. |
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Título: |
Insights into the Musa genome: syntenic relationships to rice and between Musa species. |
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Ano de publicação: |
2007 |
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Fonte/Imprenta: |
BMC Genomics, London, v. 9, 2007. |
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Descrição Física: |
il. |
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ISSN: |
1471-2164 |
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Idioma: |
Inglês |
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Conteúdo: |
Musa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes. MenosMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative a... Mostrar Tudo |
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Palavras-Chave: |
Species. |
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Categoria do assunto: |
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Marc: |
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100 1 $aLESCOT, M.
245 $aInsights into the Musa genome$bsyntenic relationships to rice and between Musa species.$h[electronic resource]
260 $c2007
300 $cil.
520 $aMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes.
653 $aSpecies
700 1 $aPIFFANELLI, P.
700 1 $aCIAMPI, A. Y.
700 1 $aRUIZ, M.
700 1 $aBLANC, G.
700 1 $aLEEBENS-MACK, J.
700 1 $aSILVA, F. R. da
700 1 $aSANTOS, C. M. R.
700 1 $aD'HONT, A.
700 1 $aGARSMEUR, O.
700 1 $aVILARINHOS, A. D.
700 1 $aKANAMORI, H.
700 1 $aMATSUMOTO, T.
700 1 $aRONNING, C. M.
700 1 $aCHEUNG, F.
700 1 $aHAAS, B. J.
700 1 $aALTHOFF, R.
700 1 $aARBOGAST, T.
700 1 $aHIRE, E.
700 1 $aPAPPAS JUNIOR, G.
700 1 $aSASAKI, T.
700 1 $aSOUZA JUNIOR, M. T.
700 1 $aMILLER, R. N. G.
700 1 $aGLASZMANN, J. C.
700 1 $aTOWN, C. D.
773 $tBMC Genomics, London$gv. 9, 2007.
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Registro original: |
Embrapa Mandioca e Fruticultura (CNPMF) |
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Voltar
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| Registros recuperados : 12 | |
| 1. |  | GUIMARÃES, P. M.; GARSMEUR, O.; PROITE, K.; LEAL BERTIOLI, S. C. M.; SEIJO, G.; CHAINE, C.; BERTIOLI, D.; D'HONT, A. BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut. BMC Plant Biology, v.8, n.14, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 2. | | GUIMARÃES, P. M.; PROITE, K.; GARSMEUR, O.; SEIJO, G.; MARTINS, W.; NIELEN, S.; FOO, C.; TOWN, C. D.; D'HONT, A.; LEAL BERTIOLI, S. C. M.; BERTIOLI, D. Analysis of the repretitive sequences in the component genomes of peanut using BAC end sequences and insitu hybridization. In: ANNUAL RESEARCH MEETING, 2007, Benoni, South Africa, Poster Abstracts...Benoni: Generation Challenge Programme - CGIAR, 2007. p. 30.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 3. | | RODRIGUEZ, M. A. D.; WAALWIJK, C.; DIAZ, C.; D'HONT, A.; YAHIAOUE, N.; BAKRLY, F.; SOUZA JR. M.; KEMA, G. H. J. Characterization of Musa germplasm for resistance to tropical race 4 of fusarium oxysporum f. sp. cubense. In: PROMUSA SYMPOSIUM, 2011, Salvador. Bananas and plantains: toward sustainable global production and improved uses: abstracts. [Montepellier.]: [Bioversity International, 2011. p.37.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 4. | | NIELEN, S.; VIDIGAL, B. S.; BERTIOLI, S. C. de M. L.; RATNAPARKHE, M.; PATERSON, A. H.; GARSMEUR, O.; D'HONT, A.; GUIMARAES, P. M.; BERTIOLI, D. J. Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A-B genome divergence. Molecular Genetics and Genomics, v. 287, p. 21-38, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | PIFFANELLI, P.; CIAMPI, A.; RUIZ, M.; SILVA, F. R. da; LESCOT, M.; PAPAS, G.; RONNING, C.; HAAS, B.; WORTMAN, J.; FRISON, E.; ROUX, N.; MILLER, R. N. G.; COTE, F.; D'HONT, A.; SOUZA, M.; GLASZMANN, J. C.; TOWN, C. Analysis of the Musa genome from BAC sequencing and its comparison with rice. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 13., 2005, San Diego, CA. [Proceedings...]. [S. l.: s.n.], 2005. Não paginado.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 6. | | BERTIOLI, D.; LEAL-BERTIOLI, S.; MORETZSOHN, M.; PROITE, K.; NIELEN, S.; MADSEN, L.; SANDAL, N.; SEIJO, G.; GUIMENES, M.; VALLS, J.; STOUGAARD, J.; GARSMEUR, O.; D'HONT, A.; SANTOS, S.; MENDES, D.; NDOYE, O. RAMI, J. F.; GUIMARÃES, P. Developing genetic and genomic tools for the efficient integration of wild genes into the peanut crop. In: EUROPEAN CONFERENCE ON GRAIN LEGUMES, 6., 2007, Lisbon, Portugal. Integrating legume biology for sustainagle agriculture: book of abstracts. Colney, Norwich: Grain Legumes Integrated Project, 2007. p. 61. Poster 541.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 7. | | BERTIOLI, D. J.; MORETZSOHN, M.; GUIMARÃES, P.; LEAL BERTIOLI, S.; MENDES, D.; VARSHNEY, R. K.; VADES, V.; ARUNA, R.; PATERSON A.; RAMI, J. F.; D'HONT, A.; FONCEKA, D.; SANDAL, N.; HOUGAARD, B.; MADSEN, L.; STOUGAARD, J. The use of wild Arachis for genetics, genomics, and improvement of cultivated peanut. In: INTERNATIONAL CONFERENCE OF THE PEANUT RESEARCH COMMUNITY, 3, 2008, Hyderabad, India. Advances in Arachis through genomics and biotechnology (AAGB-2008). India: International Crops Research Institute for the Semi-Arid Tropics, 2008. Resumo A-06.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | HIPPOLYTE, I.; BAKRY, F.; SEGUIN, M.; GARDES, L.; RIVALLAN, R.; RISTERUCCI, A. M.; JENNY, C.; PERRIER, X.; CARREEL, F.; ARGOUT, X.; PIFFANELLI, P.; KHAN, I. A.; MILLER, R. N. G.; PAPPAS JUNIOR, G. J.; MBÉGUIÉ-A-MBÉGUIÉ, D.; MATSUMOTO, T.; BERNARDINIS, V. de; HUTTNER, E.; KILIAN, A; BAURENS, F. C.; D'HONT, A.; COTE, F.; COURTOIS, B.; GLASZMANN, J. C. A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biology, v. 10, n. 65, 2010.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 9. | | LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS-MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. Insights into the Musa genome: syntenic relationships to rice and between Musa species. BMC Genomics, London, v. 9, 2007. il.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 10. | | LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. Insights into the Musa genome: syntenic relationships to rice and between Musa species. BMC Genomics, London, v.9, n.58, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 11. | | BERTIOLI, D.; GUIMARÃES, P.; MORETZSOHN, M.; LEAL BERTIOLI, S.; NIELEN, S.; GOUVÊA, E.; LUSTOSA, F.; MENDES, D.; SANTOS, S.; MACEDO, S.; JOSÉ, A. C.; SANTOS, R.; VIDIGAL, B.; BRASILEIRO, A. C.; OLIVEIRA, M.; VADEZ, V.; ARAÚJO, A. C.; RUPAKULA, A.; GIMENES, M.; VALLS, J.; PATERSON, A.; RAMI, J. F.; D'HONT, A.; FONCÉKA, D.; NDOYE, O.; SANDAL, N.; HOUGAARD, B.; MADSEN, L.; COOK, D.; STOUGAARD, J.; VARSHNEY, R. Utilização de Arachis silvestres para a construção de recursos genéticos e genômicas para amendoim cultivado. In: SIMPÓSIO BRASILEIRO DE RECURSOS GENÉTICOS, 2., 2008, Brasília, DF. Anais... Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia: Fundação de Apoio à Pesquisa Científica e Tecnológica - FUNCREDI, 2008. p.88.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 12. | | D'HONT, A.; DENOEUD, F.; AURY, J. M.; BAURENS, F. C.; CARREEL, F.; GARSMEUR, O.; NOEL, B.; BOCS, S.; DROC, G.; ROUARD, M.; SILVA, C. da; JABBARI, K.; CARDI, C.; POULAIN, J.; SOUQUET, M.; LABADIE, K.; JOURDA, C.; LENGELLÉ. J.; RODIER-GOUD, M.; ALBERTI, A.; BERNARD, M.; CORREA, M.; AYYAMPALAYAM, S.; MCKAIN, M. R.; LEEBENS-MACK, J.; BURGESS, D.; FREELING, M.; MBÉGUIÉ-A-MBÉGUIÉ, D.; CHABANNES, M.; WICKER, T.; PANAUD, O.; BARBOSA, J.; HRIBOVA, E.; HESLOP-HARRISON, P.; HABAS, R.; RIVALLAN, R.; FRANCOIS, P.; POIRON, C.; KILIAN, A.; BURTHIA, D.; JENNY, C.; BAKRY, F.; BROWN, S.; GUIGNON, V.; KEMA, G.; RODRIGUEZ, M. A. D.; WAALWIJK, C.; JOSEPH, S.; DIEVART, A.; JAILLON, O.; LECLERCQ, J.; ARGOUT, X.; LYONS, E.; ALMEIDA, A.; JERIDI, M.; DOLEZEL, J.; ROUX, N.; RISTERUCCI, A. M.; WEISSENBACH, J.; RUIZ, M.; GLASZMANN, J. C.; QUÉTIER, F.; YAHIAOUI, N.; WINCKER, P. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, v. 488, August, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 12 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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