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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
08/12/2023 |
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Data da última atualização: |
08/12/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ADUNOLA, P.; FERRÃO, M. A. G.; FERRÃO, R. G.; FONSECA, A. F. A. da; VOLPI, P. S.; COMÉRIO, M.; VERDIN FILHO, A. C.; MUNOZ, P. R.; FERRÃO, L. F. V. |
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Afiliação: |
PAUL ADUNOLA, UNIVERSITY OF FLORIDA; MARIA AMÉLIA G FERRÃO, CNPCa; ROMÁRIO G FERRÃO, INSTITUTO CAPIXABA DE PESQUISA, ASSISTÊNCIA TÉCNICA E EXTENSÃO RURAL; AYMBIRE F A DA FONSECA, INSTITUTO CAPIXABA DE PESQUISA, ASSISTÊNCIA TÉCNICA E EXTENSÃO RURAL; PAULO S VOLPI, INSTITUTO CAPIXABA DE PESQUISA, ASSISTÊNCIA TÉCNICA E EXTENSÃO RURAL; MARCONE COMÉRIO, INSTITUTO CAPIXABA DE PESQUISA, ASSISTÊNCIA TÉCNICA E EXTENSÃO RURAL; ABRAÃO C VERDIN FILHO, INSTITUTO CAPIXABA DE PESQUISA, ASSISTÊNCIA TÉCNICA E EXTENSÃO RURAL; PATRICIO R MUNOZ, UNIVERSITY OF FLORIDA; LUÍS FELIPE V FERRÃO, UNIVERSITY OF FLORIDA. |
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Título: |
Genomic selection for genotype performance and environmental stability in Coffea canéfora. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
G3: Genes, Genomes, Genetics, v. 13, n. 6, p. 1-13, 2023. |
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DOI: |
https://doi.org/10.1093/g3journal/jkad062 |
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Idioma: |
Inglês |
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Conteúdo: |
Coffee is one of the most important beverages and trade products in the world. Among the multiple research initiatives focused on coffee sustainability, plant breeding provides the best means to increase phenotypic performance and release cultivars that could meet market demands. Since coffee is well adapted to a diversity of tropical environments, an important question for those confronting the problem of evaluating phenotypic performance is the relevance of genotype-by-environment interaction. As a perennial crop with a long juvenile phase, coffee is subjected to significant temporal and spatial variations. Such facts not only hinder the selection of promising materials but also cause a majority of complaints among growers. In this study, we hypothesized that trait stability in coffee is genetically controlled and therefore is predictable using molecular information. To test it, we used genome-based methods to predict stability metrics computed with the primary goal of selecting coffee genotypes that combine high phenotypic performance and stability for target environments. Using 2 populations of Coffea canephora, evaluated across multiple years and locations, our contribution is 3-fold: (1) first, we demonstrated that the number of harvest evaluations may be reduced leading to accelerated implementation of molecular breeding; (2) we showed that stability metrics are predictable; and finally, (3) both stable and high-performance genotypes can be simultaneously predicted and selected. While this research was carried out on representative environments for coffee production with substantial crossover in genotypic ranking, we anticipate that genomic prediction can be an efficient tool to select coffee genotypes that combine high performance and stability across years and the target locations here evaluated. MenosCoffee is one of the most important beverages and trade products in the world. Among the multiple research initiatives focused on coffee sustainability, plant breeding provides the best means to increase phenotypic performance and release cultivars that could meet market demands. Since coffee is well adapted to a diversity of tropical environments, an important question for those confronting the problem of evaluating phenotypic performance is the relevance of genotype-by-environment interaction. As a perennial crop with a long juvenile phase, coffee is subjected to significant temporal and spatial variations. Such facts not only hinder the selection of promising materials but also cause a majority of complaints among growers. In this study, we hypothesized that trait stability in coffee is genetically controlled and therefore is predictable using molecular information. To test it, we used genome-based methods to predict stability metrics computed with the primary goal of selecting coffee genotypes that combine high phenotypic performance and stability for target environments. Using 2 populations of Coffea canephora, evaluated across multiple years and locations, our contribution is 3-fold: (1) first, we demonstrated that the number of harvest evaluations may be reduced leading to accelerated implementation of molecular breeding; (2) we showed that stability metrics are predictable; and finally, (3) both stable and high-performance genotypes can be simultaneously predicted an... Mostrar Tudo |
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Thesagro: |
Coffea Canephora. |
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Thesaurus Nal: |
Genomics; Genotype; Plant breeding; Prediction. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1159395/1/Genomic-selection-for-genotype.pdf
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Marc: |
LEADER 02692naa a2200289 a 4500
001 2159395
005 2023-12-08
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1093/g3journal/jkad062$2DOI
100 1 $aADUNOLA, P.
245 $aGenomic selection for genotype performance and environmental stability in Coffea canéfora.$h[electronic resource]
260 $c2023
520 $aCoffee is one of the most important beverages and trade products in the world. Among the multiple research initiatives focused on coffee sustainability, plant breeding provides the best means to increase phenotypic performance and release cultivars that could meet market demands. Since coffee is well adapted to a diversity of tropical environments, an important question for those confronting the problem of evaluating phenotypic performance is the relevance of genotype-by-environment interaction. As a perennial crop with a long juvenile phase, coffee is subjected to significant temporal and spatial variations. Such facts not only hinder the selection of promising materials but also cause a majority of complaints among growers. In this study, we hypothesized that trait stability in coffee is genetically controlled and therefore is predictable using molecular information. To test it, we used genome-based methods to predict stability metrics computed with the primary goal of selecting coffee genotypes that combine high phenotypic performance and stability for target environments. Using 2 populations of Coffea canephora, evaluated across multiple years and locations, our contribution is 3-fold: (1) first, we demonstrated that the number of harvest evaluations may be reduced leading to accelerated implementation of molecular breeding; (2) we showed that stability metrics are predictable; and finally, (3) both stable and high-performance genotypes can be simultaneously predicted and selected. While this research was carried out on representative environments for coffee production with substantial crossover in genotypic ranking, we anticipate that genomic prediction can be an efficient tool to select coffee genotypes that combine high performance and stability across years and the target locations here evaluated.
650 $aGenomics
650 $aGenotype
650 $aPlant breeding
650 $aPrediction
650 $aCoffea Canephora
700 1 $aFERRÃO, M. A. G.
700 1 $aFERRÃO, R. G.
700 1 $aFONSECA, A. F. A. da
700 1 $aVOLPI, P. S.
700 1 $aCOMÉRIO, M.
700 1 $aVERDIN FILHO, A. C.
700 1 $aMUNOZ, P. R.
700 1 $aFERRÃO, L. F. V.
773 $tG3: Genes, Genomes, Genetics$gv. 13, n. 6, p. 1-13, 2023.
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Registro original: |
Embrapa Café (CNPCa) |
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Biblioteca |
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| Registros recuperados : 271 | |
| 161. |  | SINICO, T. E.; ARENA, G. D.; KITAJIMA, E. W.; MACHADO, M. A.; NOVELLI, V. M.; ASTUA, J. de F. Trascriptome of the Citrus Leprosis Virus C - Brevipalpus Yothersi interaction. In: CONGRESSO BRASILEIRO DE VIROLOGIA, 28.; ENCONTRO DE VIROLOGIA DO MERCOSUL, 12., 2017, Belo Horizonte. Trabalho pôsteres... Brasília: SBV, 2017.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 163. | | INOUE-NAGATA, A. K.; KOMELINK, R.; SGRO, J. Y.; NAGATA, T.; KITAJIMA, E. W.; GOLDBACH, E. W.; PETERS, D. Tomato spotted wilt virus defective interfering RNAs, important features of their generation and survival. In:INTERNATIONAL SYMPOSIUM ON TOSPOVIRUSES AND THRIPS IN FLORAL AND VEGETAVBLE CROPS, 4., 1998, Wageningen. Recent progress in tospovirus thrips research: abstracts of papers and poster presentations. Wageningen: Experimental Plant Science / Production Ecology, 1998. p. 4-5.| Biblioteca(s): Embrapa Hortaliças. |
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| 164. | | KITAJIMA, E. W.; CALEGARIO, R. F.; LOCALI-FABRIS, E. C.; NOVELLI, V. M.; BASTIANEL, M.; FREITAS-ASTÚA, J.; FRANCISCHINI, F. In situ detection of CiLV-C in the mite vector Brevipalpus phoenicis, evidence for a circulative type of virus/vector relationship and a model for the virus circulation in the mite. Tropical Plant Pathology, Brasilia, DF, v. 33, supl., ago. 2008.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 165. | | KITAJIMA, E. W.; CALEGARIO, R. F.; NOVELLI, V. M.; LOCALI-FABRIS, E. C.; BASTIANEL, M.; FRANCISCHINI, F.; FREITAS-ASTUA, J. In situ detection and immunolocalization of the Citrus leprosis virus cytoplasmic type (CiLV) in the mite vector and evidences that the virus/vector relationship is of circulative type. In: INTERNATIONAL SCIENTIFIC SEMINAR ON PLANT HEALTH, 6.; LATIN AMERICAN AND CARIBBEAN SYMPOSIUM, 2., 2008, La Habana, Cuba. Acarina Biodiversity: their use, protection and conservation. Havana, [s.n.], 2008. 1 CD ROM| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 168. | | MACIEL-ZAMBOLIM, E.; COSTA, H.; CAPUCHO, A. S.; ÁVILA, A. C. de; INOUE-NAKATA, A. K.; KITAJIMA, E. W. Surto epidemiológico do vírus do mosaico amarelo do pimentão em tomateiro na região serrana do Espirito Santo. Fitopatologia Brasileira, Brasilia, v. 29, n. 3, p. 325-327, maio/jun. 2004.| Biblioteca(s): Embrapa Hortaliças. |
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| 169. | | LEASTRO, M. O.; VILLAR-ÁLVAREZ, D.; ASTUA, J. de F.; KITAJIMA, E. W.; PALLÁS, V.; SÁNCHEZ-NAVARRO, J. Á. Spontaneous mutation in the movement protein of Citrus Leprosis Virus C2, in a heterologous virus infection context, increases cell-to-cell transport and generates fitness advantage. Viruses , v.13, n.12, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 170. | | POZZER, L.; RESENDE, R. de O.; BEZERRA, M. I.; NAGATA, T.; LIMA, M. I.; KITAJIMA, E. W.; AVILA, A. C. Zucchini lethal chlorotic virus(ZCLV): a proposed new species in the tospovirus genus. Fitopatologia Brasileira, Brasilia, v.21, p.432, ago. 1996. Resumo. Suplemento.| Biblioteca(s): Embrapa Hortaliças. |
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| 171. | | BRIOSO, P. S. T.; POZZER, L.; SILVA, S.; KITAJIMA, E. W.; POLTRONIERI, L. S.; TRINDADE, D. R.; DUARTE, M. de L. R. Amplificação de fragmento específico do PYMV a partir de pimenta do reino. Fitopatologia Brasileira, v. 25, p. 438, ago. 2000. Suplemento. Edição dos anais do 33º Congresso Brasileiro de Fitopatologia.| Biblioteca(s): Embrapa Amazônia Oriental. |
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| 172. | | ASTUA, J. de F.; KITAJIMA, E. W.; KUBO, K. S.; BASTIANEL, M.; CRISTOFANI-VALY, M.; LOCALI-FABRIS, E.; NOVELLI, V. M.; MACHADO, M. A. The atypical Brevipalpus-transmitted viruses and their interactions with host plants and mite vectors. In: EMBO WORLD LECTURE COURSE VIRUS-HOST: PARTNERS IN PATHOGENICITY, 2010, San Jose. [Abstracts...].San Jose: EMBO, 2010. p. 40. Organizado por Cecilia Ramirez.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 173. | | ARENA, G. D.; RAMOS-GONZÁLEZ, P. L.; NUNES, M. A.; JESUS, C. C.; CALEGARIO, R. F.; KITAJIMA, E. W.; NOVELLI, V. M.; ASTUA, J. de F. Arabidopsis thaliana as a model host for Brevipalpus mite-transmitted viruses. Scientia Agricola, v.74, n.1, p.1-10X, 2017| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 174. | | NICOLINI, F.; BASTIANEL, M.; SCHONS, J.; KITAJIMA, E. W.; LOCALI-FABRIS, E. C.; PEREIRA, J. A.; KUBO, K. S.; NOVELLI, V. M.; MACHADO, M. A.; FREITAS-ASTÚA, J. Comparação entre os títulos de vírus transmitidos por ácaros Brevipalpus por RT-qPCR. Tropical Plant Pathology, Brasilia, DF, v. 33, supl., ago. 2008.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 176. | | AVILA, A. C. de; HAAN, de P.; KITAJIMA, E. W.; KORMELINK, R.; RESENDE R. de O.; GOLDBACH, R. W.; PETERS, D. Characterization of a distinct isolate of tomato spotted wilt virus (TSWV) from impatiens sp. in the Netherlands. Phytopathology, v.134, n.2, p.133-151, 1992.| Biblioteca(s): Embrapa Hortaliças. |
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| 177. | | BASTIANEL, M.; NOVELLI, V. M.; KITAJIMA, E. W.; KUBO, K. S.; BASSANEZI, R. B.; MACHADO, M. A.; ASTUA, J. de F. Citrus leprosis centennial of an unusual mite-virus pathosystem. Plant Disease, St. Paul, v.94, n.3, p.284-292, 2010.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 178. | | KITAJIMA, E. W.; CHAGAS, C. M.; HARAKAVA, R.; CALEGARIO, R. F.; ASTUA, J. de F.; RODRIGUES, C. V.; CHILDERS, C. C. Citrus leprosis in Florida, USA, appears to have been caused by the nuclear type of Citrus Leprosis Virus (CiLV-N). Virus Reviews and Research, January 2011.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 179. | | NUNES, M. A.; BERGAMINI M. P.; COERINI, L. F.; BASTIANEL, M.; NOVELLI, V. M.; KITAJIMA, E. W.; ASTUA, J. de F. Citrus leprosis virus C naturally infecting commelina benghalensis, a prevalent monocot weed of citrus orchards in Brazil. Plant Disease, v. 96, n. 5, p. 770, May 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 180. | | RAMOS-GONZÁLEZ, P. L.; CHABI-JESUS, C.; GUERRA-PERAZA, O.; TASSI, A. D.; KITAJIMA, E. W.; HARAKAVA, R.; SALAROLI, R. B.; ASTUA, J. de F. Citrus leprosis virus N: a new dichorhavirus causing citrus leprosis disease. Phytopathology, v.107, n.8, August 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 271 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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