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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
Data corrente: |
26/05/2017 |
Data da última atualização: |
21/05/2019 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
BUZANSKAS, M. E.; VENTURA, R. V.; CHUD, T. C. S.; BERNARDES, P. A.; SANTOS, D. J. de A.; REGITANO, L. C. de A.; ALENCAR, M. M. de; MUDADU, M. de A.; ZANELLA, R.; SILVA, M. V. G. B.; LI, C.; SCHENKE, F. S.; MUNARI, D. P. |
Afiliação: |
Marcos Eli Buzanskas, Unesp; Ricardo Vieira Ventura, USP; Tatiane Cristina Seleguim Chud, Unesp; Priscila Arrigucci Bernardes, Unesp; Daniel Jordan de Abreu Santos, Unesp; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; MAURICIO MELLO DE ALENCAR, CPPSE; MAURICIO DE ALVARENGA MUDADU, CNPTIA; Ricardo Zanella, UPF; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; Changxi Li, University of Alberta; Flavio Schramm Schenke, University of Guelph; Danísio Prado Munari, Unesp. |
Título: |
Study on the introgression of beef breeds in canchim cattle using single nucleotide polymorphism markers. |
Ano de publicação: |
2017 |
Fonte/Imprenta: |
Plos one, v. 12, p. 1-16, 2017. |
DOI: |
https://doi.org/10.1371/journal.pone.0171660 |
Idioma: |
Inglês |
Conteúdo: |
The aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais?37.5% Zebu) and MA genetic group (MA: 65.6% Charolais?34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimation could account for this breed composition information as a source of variation in order to improve the accuracy of genetic models. Our findings may help assemble appropriate reference populations for genomic prediction for Canchim-MA in order to improve prediction accuracy. Using the information on the level of introgression in each individual could also be useful in breeding or crossing design to improve individual heterosis in crossbred cattle. MenosThe aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais?37.5% Zebu) and MA genetic group (MA: 65.6% Charolais?34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimat... Mostrar Tudo |
Palavras-Chave: |
Canchim cattle; Polimorfismo de nucleotídeo único; Raças de gado. |
Thesagro: |
Gado canchim; Gado de corte; Gado Indubrasil; Gado nelore. |
Thesaurus Nal: |
beef cattle; Cattle breeds; Charolais; Composite breeds; polymorphism; Single nucleotide polymorphism. |
Categoria do assunto: |
G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/160251/1/journal.pone.0171660.pdf
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Marc: |
LEADER 03213naa a2200433 a 4500 001 2070093 005 2019-05-21 008 2017 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1371/journal.pone.0171660$2DOI 100 1 $aBUZANSKAS, M. E. 245 $aStudy on the introgression of beef breeds in canchim cattle using single nucleotide polymorphism markers.$h[electronic resource] 260 $c2017 520 $aThe aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais?37.5% Zebu) and MA genetic group (MA: 65.6% Charolais?34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimation could account for this breed composition information as a source of variation in order to improve the accuracy of genetic models. Our findings may help assemble appropriate reference populations for genomic prediction for Canchim-MA in order to improve prediction accuracy. Using the information on the level of introgression in each individual could also be useful in breeding or crossing design to improve individual heterosis in crossbred cattle. 650 $abeef cattle 650 $aCattle breeds 650 $aCharolais 650 $aComposite breeds 650 $apolymorphism 650 $aSingle nucleotide polymorphism 650 $aGado canchim 650 $aGado de corte 650 $aGado Indubrasil 650 $aGado nelore 653 $aCanchim cattle 653 $aPolimorfismo de nucleotídeo único 653 $aRaças de gado 700 1 $aVENTURA, R. V. 700 1 $aCHUD, T. C. S. 700 1 $aBERNARDES, P. A. 700 1 $aSANTOS, D. J. de A. 700 1 $aREGITANO, L. C. de A. 700 1 $aALENCAR, M. M. de 700 1 $aMUDADU, M. de A. 700 1 $aZANELLA, R. 700 1 $aSILVA, M. V. G. B. 700 1 $aLI, C. 700 1 $aSCHENKE, F. S. 700 1 $aMUNARI, D. P. 773 $tPlos one$gv. 12, p. 1-16, 2017.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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| Acesso ao texto completo restrito à biblioteca da Embrapa Cerrados. Para informações adicionais entre em contato com cpac.biblioteca@embrapa.br. |
Registro Completo
Biblioteca(s): |
Embrapa Cerrados. |
Data corrente: |
08/09/2011 |
Data da última atualização: |
24/11/2011 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
A - 2 |
Autoria: |
VASCONCELOS, E. A. R.; SANTANA, C. G.; GODOY, C. V.; SEIXAS, C. D. S.; SILVA, M. S.; MOREIRA, L. R. S.; OLIVEIRA-NETO, O. B.; PRICE, D.; FITCHES, E.; FILHO, E. X. F.; REIS, A. M. dos; GATEHOUSE, J. A.; SA, M. F. G. de. |
Afiliação: |
ERICO A. R. VASCONCELOS, EMBRAPA CENARGEN; CELSO G. SANTANA, EMBRAPA CENARGEN; CLAUDIA VIEIRA GODOY, CNPSO; CLAUDINE DINALI SANTOS SEIXAS, CNPSO; MARILIA SANTOS SILVA, CPAC; LEONORA R. S. MOREIRA, UNB; OSMUNDO B. OLIVEIRA-NETO, EMBRAPA CENARGEN; DANIEL PRICE, DURHAM UNIVERSITY; ELAINE FITCHES, DURHAM UNIVERSITY; EDIVALDO X. F. FILHO, UNB; ANGELA MEHTA DOS REIS, CENARGEN; JOHN A. GATEHOUSE, UNIVERSITY DURHAM; MARIA FATIMA GROSSI DE SA, CENARGEN. |
Título: |
A new chitinase-like xylanase inhibitor protein (XIP) from coffee (Coffea arabica) affects Soybean Asian rust (Phakopsora pachyrhizi) spore germination. |
Ano de publicação: |
2011 |
Fonte/Imprenta: |
BMC Biotechnology, v. 11, n. 14, 2011. |
DOI: |
10.1186/1472-6750-11-14 |
Idioma: |
Inglês |
Palavras-Chave: |
Controle de praga. |
Thesagro: |
Praga de Planta; Soja. |
Categoria do assunto: |
-- |
Marc: |
LEADER 00913naa a2200301 a 4500 001 1899954 005 2011-11-24 008 2011 bl uuuu u00u1 u #d 024 7 $a10.1186/1472-6750-11-14$2DOI 100 1 $aVASCONCELOS, E. A. R. 245 $aA new chitinase-like xylanase inhibitor protein (XIP) from coffee (Coffea arabica) affects Soybean Asian rust (Phakopsora pachyrhizi) spore germination. 260 $c2011 650 $aPraga de Planta 650 $aSoja 653 $aControle de praga 700 1 $aSANTANA, C. G. 700 1 $aGODOY, C. V. 700 1 $aSEIXAS, C. D. S. 700 1 $aSILVA, M. S. 700 1 $aMOREIRA, L. R. S. 700 1 $aOLIVEIRA-NETO, O. B. 700 1 $aPRICE, D. 700 1 $aFITCHES, E. 700 1 $aFILHO, E. X. F. 700 1 $aREIS, A. M. dos 700 1 $aGATEHOUSE, J. A. 700 1 $aSA, M. F. G. de 773 $tBMC Biotechnology$gv. 11, n. 14, 2011.
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