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Registro Completo |
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
02/09/2013 |
Data da última atualização: |
04/04/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. |
Afiliação: |
VALÉRIA S. LOPES-CAITAR; MAYRA C. C. G. DE CARVALHO, UENP; MARCIA KAMOGAE KUWAHARA, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI; WALDIR PEREIRA DIAS, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO. |
Título: |
Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. |
Ano de publicação: |
2013 |
Fonte/Imprenta: |
BMC Genomics, v. 14, article 577, 2013. |
Páginas: |
17 p. |
ISSN: |
1471-2164 |
DOI: |
10.1186/1471-2164-14-577 |
Idioma: |
Inglês |
Conteúdo: |
The Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function. MenosThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. ... Mostrar Tudo |
Thesagro: |
Soja. |
Thesaurus Nal: |
Soybeans. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/102608/1/genome-wide.pdf
|
Marc: |
LEADER 03155naa a2200265 a 4500 001 1965345 005 2022-04-04 008 2013 bl uuuu u00u1 u #d 022 $a1471-2164 024 7 $a10.1186/1471-2164-14-577$2DOI 100 1 $aLOPES-CAITAR, V. S. 245 $aGenome-wide analysis of the Hsp20 gene family in soybean$bcomprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses.$h[electronic resource] 260 $c2013 300 $a17 p. 520 $aThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function. 650 $aSoybeans 650 $aSoja 700 1 $aCARVALHO, M. C. C. G. de 700 1 $aLUANA M. DARBEN 700 1 $aKUWAHARA, M. K. 700 1 $aNEPOMUCENO, A. L. 700 1 $aDIAS, W. P. 700 1 $aABDELNOOR, R. V. 700 1 $aMARCELINO-GUIMARÃES, F. C. 773 $tBMC Genomics$gv. 14, article 577, 2013.
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Embrapa Soja (CNPSO) |
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301. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | AZEVEDO, D. M. P. de; SANTOS, R. C. dos; BELTRAO, N. E. de M.; NOBREGA, L. B. da; VIEIRA, D. J.; ALVES, I.; ARAUJO, J. D. de; SILVEIRA, N. A. da. Efeitos de herbicidas no controle de plantas daninhas de amendoim. Campina Grande: EMBRAPA-CNPA, 1998. 3p. (EMBRAPA-CNPA. Pesquisa em Andamento, 79)Biblioteca(s): Embrapa Algodão. |
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302. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | BELTRÃO, N. E. de M.; AZEVEDO, D. M. P. de; SOUZA, J. G. de; NOBREGA, L. B. da; VIEIRA, D. J.; SANTOS, J. W. dos; DANTAS, E. S. B.; ARAUJO, J. D. de. Evolução da fitomassa da área foliar e da altura de planta da cultivar 7 MH, nas condições do Seridó da Paraíba: dados de 1997. Campina Grande: EMBRAPA-CNPA, 1997. 5p. (EMBRAPA-CNPA. Pesquisa em Andamento, 72)Biblioteca(s): Embrapa Algodão. |
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303. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | AZEVEDO, D. M. P. de; ARAUJO NETO, R. B. de; TEIXEIRA NETO, M. L.; VIEIRA, P. F. de M. J.; SILVA JUNIOR, E. C. da; PEREIRA, E. T. da S. Rendimento de grãos e qualidade de forrageiras em cultivo solteiro e consorciado. In: CONGRESSO NORDESTINO DE PRODUÇÃO ANIMAL, 10., 2015, Teresina. [Anais...]. Teresina: Sociedade Nordestina de Produção Animal, 2015.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Meio-Norte. |
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304. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | SANT'ANA, E. P.; MORAIS, O. P. de; CASTRO, E. da M. de; MOURA NETO, F. P.; BRESEGHELLO, F.; WANDERLEY, J. C.; BAZONI, R.; COLLICCHIO, E.; SOUZA, N. R. G. de; LOPES, A. de M.; AZEVEDO, D. M. P. de; OLIVEIRA, M. N. de; ATROCH, A. L. Maravilha: cultivar de arroz de grão agulhinha para cultivo em terras altas em condições favorecidas. Santo Antônio de Goiás: EMBRAPA-CNPAF, 1998. 2 p. (EMBRAPA-CNPAF. Pesquisa em foco, 14).Biblioteca(s): Embrapa Amazônia Oriental; Embrapa Arroz e Feijão. |
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305. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | SANTOS, R. C. dos; FREIRE, R. M. M.; FIRMINO, P. de T.; AZEVEDO, D. M. P. de; ALMEIDA, R. P. de; SOARES, J. J.; SILVA, O. R. R. F.; REGO, G. M.; RIBEIRO, G. P.; ANDRADE, G. P.; COUTINHO, J. L. B.; SILVA, A. P. G.; FERREIRA FILHO, J. R.; ARAÚJO, J. F.; VASCONCELOS, O. L.; SILVEIRA, N. A. da. Cultivar de amendoim BRS 151 L7. 2. ed. Campina Grande: Embrapa Algodão, 2010. nao paginado.Biblioteca(s): Embrapa Algodão. |
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306. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | TEIXEIRA NETO, M. L.; CARVALHO, G. M. C.; ARAUJO NETO, R. B. de; AZEVEDO, D. M. P. de; FROTA, M. N. L. da; MONTEIRO, F. das C.; SOUZA, H. A. de; ALCANTARA, R. M. C. M. de; ANDRADE JUNIOR, A. S. de; CARDOSO, M. J.; MELO, F. de B.; LIMA NETO, A. F.; AZEVEDO, D. M. M. R.; VIEIRA, P. F. de M. J.; KIMPARA, J. M.; LEAL, T. M.; ARAUJO, A. M. de; RIBEIRO, M. E. Integração Lavoura-Pecuária-Floresta (ILPF) nos cerrados do Piauí e do Maranhão: estratégia de produção para quatro safras ao ano só com chuvas. Teresina: Embrapa Meio-Norte, 2019. 19 p. il.; 24 cm x 18 cm.Tipo: Folder/Folheto/Cartilha |
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307. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | TEIXEIRA NETO, M. L.; ARAUJO NETO, R. B. de; ALCANTARA, R. M. C. M. de; SOUZA, H. A. de; AZEVEDO, D. M. P. de; CARVALHO, G. M. C.; FROTA, M. N. L. da; VILELA, L.; COSTA, J. B.; FRAZAO, J. M. F.; TOLEDO, M. M.; QUINZEIRO NETO, T.; BARBOSA, C. F.; SANTOS, A. M.; BORTOLON, E. S. O.; BELCHIOR, E. B.; BORTOLON, L.; ALCANTARA, P. H. R. de; ALMEIDA, R. E. M. de; SANTOS, D. Sistemas ILPF e transferência de tecnologia nos Estados do Maranhão, Tocantins, Piauí e Oeste da Bahia. In: SKORUPA, L. A.; MANZATTO, C. V. (Ed.). Sistemas de integração lavoura-pecuária-floresta no Brasil: estratégias regionais de transferência de tecnologia, avaliação da adoção e de impactos. Brasília, DF: Embrapa, 2019. Cap. 4. p. 105-163. il. color.Tipo: Capítulo em Livro Técnico-Científico |
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