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Registro Completo |
Biblioteca(s): |
Embrapa Suínos e Aves. |
Data corrente: |
03/08/2021 |
Data da última atualização: |
03/08/2021 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
FERNANDES, A. C.; SILVA, V. H. da; GOES, C. P.; MOREIRA, G. C. M.; GODOY, T. F.; IBELLI, A. M. G.; PEIXOTO, J. de O.; CANTAO, M. E.; LEDUR, M. C.; REZENDE, F. M. de; COUTINHO, L. L. |
Afiliação: |
ANNA CAROLINA FERNANDES, ESALQ; VINICIUS HENRIQUE DA SILVA, ESALQ; CAROLINA PURCELL GOES, ESALQ; GABRIEL COSTA MONTEIRO MOREIRA, University of Liège; THAIS FERNANDA GODOY, ESALQ; ADRIANA MERCIA GUARATINI IBELLI, CNPSA; JANE DE OLIVEIRA PEIXOTO, CNPSA; MAURICIO EGIDIO CANTAO, CNPSA; MONICA CORREA LEDUR, CNPSA; FERNANDA MARCONDES REZENDE, University of Florida; LUIZ LEHMANN COUTINHO, ESALQ. |
Título: |
Genome-wide detection of CNVs and their association with performance traits in broilers. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
BMC Genomics, v. 22, n. 354, 2021. |
DOI: |
https://doi.org/10.1186/s12864-021-07676-1 |
Idioma: |
Inglês |
Conteúdo: |
Abstract Background: Copy number variations (CNVs) are a major type of structural genomic variants that underlie genetic architecture and phenotypic variation of complex traits, not only in humans, but also in livestock animals. We identified CNVs along the chicken genome and analyzed their association with performance traits. Genome-wide CNVs were inferred from Affymetrix® high density SNP-chip data for a broiler population. CNVs were concatenated into segments and association analyses were performed with linear mixed models considering a genomic relationship matrix, for birth weight, body weight at 21, 35, 41 and 42 days, feed intake from 35 to 41 days, feed conversion ratio from 35 to 41 days and, body weight gain from 35 to 41 days of age. Results: We identified 23,214 autosomal CNVs, merged into 5042 distinct CNV regions (CNVRs), covering 12.84% of the chicken autosomal genome. One significant CNV segment was associated with BWG on GGA3 (q-value = 0.00443); one significant CNV segment was associated with BW35 (q-value = 0.00571), BW41 (q-value = 0.00180) and BW42 (q-value = 0.00130) on GGA3, and one significant CNV segment was associated with BW on GGA5 (q-value = 0.00432). All significant CNV segments were verified by qPCR, and a validation rate of 92.59% was observed. These CNV segments are located nearby genes, such as KCNJ11, MyoD1 and SOX6, known to underlie growth and development. Moreover, gene-set analyses revealed terms linked with muscle physiology, cellular processes regulation and potassium channels. Conclusions: Overall, this CNV-based GWAS study unravels potential candidate genes that may regulate performance traits in chickens. Our findings provide a foundation for future functional studies on the role of specific genes in regulating performance in chickens. Keywords: GWAS, Performance, CNVs, QTLs, qPCR MenosAbstract Background: Copy number variations (CNVs) are a major type of structural genomic variants that underlie genetic architecture and phenotypic variation of complex traits, not only in humans, but also in livestock animals. We identified CNVs along the chicken genome and analyzed their association with performance traits. Genome-wide CNVs were inferred from Affymetrix® high density SNP-chip data for a broiler population. CNVs were concatenated into segments and association analyses were performed with linear mixed models considering a genomic relationship matrix, for birth weight, body weight at 21, 35, 41 and 42 days, feed intake from 35 to 41 days, feed conversion ratio from 35 to 41 days and, body weight gain from 35 to 41 days of age. Results: We identified 23,214 autosomal CNVs, merged into 5042 distinct CNV regions (CNVRs), covering 12.84% of the chicken autosomal genome. One significant CNV segment was associated with BWG on GGA3 (q-value = 0.00443); one significant CNV segment was associated with BW35 (q-value = 0.00571), BW41 (q-value = 0.00180) and BW42 (q-value = 0.00130) on GGA3, and one significant CNV segment was associated with BW on GGA5 (q-value = 0.00432). All significant CNV segments were verified by qPCR, and a validation rate of 92.59% was observed. These CNV segments are located nearby genes, such as KCNJ11, MyoD1 and SOX6, known to underlie growth and development. Moreover, gene-set analyses revealed terms linked with muscle physiology, cellular p... Mostrar Tudo |
Palavras-Chave: |
CNVs; Copy number variations; Desempenho zootécnico; GWAS; QPCR; QTLs. |
Thesagro: |
Gallus Domesticus; Genética Animal; Performance. |
Thesaurus Nal: |
Animal genetics; Animal performance; Gallus gallus; Genome-wide association study; Quantitative polymerase chain reaction; Quantitative trait loci. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/224781/1/final9547.pdf
|
Marc: |
LEADER 03101naa a2200433 a 4500 001 2133197 005 2021-08-03 008 2021 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1186/s12864-021-07676-1$2DOI 100 1 $aFERNANDES, A. C. 245 $aGenome-wide detection of CNVs and their association with performance traits in broilers.$h[electronic resource] 260 $c2021 520 $aAbstract Background: Copy number variations (CNVs) are a major type of structural genomic variants that underlie genetic architecture and phenotypic variation of complex traits, not only in humans, but also in livestock animals. We identified CNVs along the chicken genome and analyzed their association with performance traits. Genome-wide CNVs were inferred from Affymetrix® high density SNP-chip data for a broiler population. CNVs were concatenated into segments and association analyses were performed with linear mixed models considering a genomic relationship matrix, for birth weight, body weight at 21, 35, 41 and 42 days, feed intake from 35 to 41 days, feed conversion ratio from 35 to 41 days and, body weight gain from 35 to 41 days of age. Results: We identified 23,214 autosomal CNVs, merged into 5042 distinct CNV regions (CNVRs), covering 12.84% of the chicken autosomal genome. One significant CNV segment was associated with BWG on GGA3 (q-value = 0.00443); one significant CNV segment was associated with BW35 (q-value = 0.00571), BW41 (q-value = 0.00180) and BW42 (q-value = 0.00130) on GGA3, and one significant CNV segment was associated with BW on GGA5 (q-value = 0.00432). All significant CNV segments were verified by qPCR, and a validation rate of 92.59% was observed. These CNV segments are located nearby genes, such as KCNJ11, MyoD1 and SOX6, known to underlie growth and development. Moreover, gene-set analyses revealed terms linked with muscle physiology, cellular processes regulation and potassium channels. Conclusions: Overall, this CNV-based GWAS study unravels potential candidate genes that may regulate performance traits in chickens. Our findings provide a foundation for future functional studies on the role of specific genes in regulating performance in chickens. Keywords: GWAS, Performance, CNVs, QTLs, qPCR 650 $aAnimal genetics 650 $aAnimal performance 650 $aGallus gallus 650 $aGenome-wide association study 650 $aQuantitative polymerase chain reaction 650 $aQuantitative trait loci 650 $aGallus Domesticus 650 $aGenética Animal 650 $aPerformance 653 $aCNVs 653 $aCopy number variations 653 $aDesempenho zootécnico 653 $aGWAS 653 $aQPCR 653 $aQTLs 700 1 $aSILVA, V. H. da 700 1 $aGOES, C. P. 700 1 $aMOREIRA, G. C. M. 700 1 $aGODOY, T. F. 700 1 $aIBELLI, A. M. G. 700 1 $aPEIXOTO, J. de O. 700 1 $aCANTAO, M. E. 700 1 $aLEDUR, M. C. 700 1 $aREZENDE, F. M. de 700 1 $aCOUTINHO, L. L. 773 $tBMC Genomics$gv. 22, n. 354, 2021.
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Registro original: |
Embrapa Suínos e Aves (CNPSA) |
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Registros recuperados : 151 | |
101. | | SAVOLDI, I. R.; IBELLI, A. M. G.; CANTAO, M. E.; PEIXOTO, J. de O.; MORES, M. A. Z.; LAGOS, E. B.; LOPES, J. S.; ZANELLA, R.; LEDUR, M. C. A joint analysis using exome and transcriptome data identifiescandidate polymorphisms and genes involved with umbilical hernia in pigs. BMC Genomics, v. 22, n. 818, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Suínos e Aves. |
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102. | | IBELLI, A. M. G.; PEIXOTO, J. de O.; FERNANDES, L. T.; HAACH, V.; GAVA, D.; BASTOS, A. P. A.; FONSECA, F. M. da; MORES, M. A. Z.; CANTAO, M. E.; SCHAEFER, R.; LEDUR, M. C. Molecular mechanisms involved with influenza A nanovaccine immunogenicity in pigs. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 12., 2022, Rotterdam. Proceedings: technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. Wageningen: Wageningen Academic Publishers, 2022. Edited by R. F. Veerkamp and Y. de Haas.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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103. | | ZANELLA, J. R. C.; SCHAEFER, R.; GAVA, D.; KLEIN, C. S.; CANTAO, M. E.; SILVA, V. S.; MORES, M. A. Z.; SILVA, M. C. da; MORES, N.; RECH, R. R.; CARON, L. Influenza A virus infection on swine in Brazil. O Biológico, São Paulo, v. 75, p. 32, 2013. Suplemento 2, ref. 30. Edição dos Resumos do 3 Encontro Nacional de Defesa Sanitária Animal, Foz de Iguaçu, dez. 2013.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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104. | | JOAQUIM, L. B.; CHUD, T. C. S.; MARCHESI, J. A. P.; SAVEGNAGO, R. P.; BUZANKAS, M. E.; ZANELLA, R.; CANTAO, M. E.; PEIXOTO, J. de O.; LEDUR, M. C.; IRGANG, R.; MUNARI, D. P. Genomic structure of a crossbred landrace pig population. Plos One, v. 14, n.2, e0212266, 2019.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Suínos e Aves. |
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105. | | ONO, R. K.; IBELLI, A. M. G.; CANTAO, M. E.; PEIXOTO, J. de O.; SOLLERO, B. P.; SUREK, D.; MOREIRA, G. C. M.; GODOY, T. F.; COUTINHO, L. L.; LEDUR, M. C. Genome-wide association study for femur-related traits in broilers. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 11., 2018, Auckland, New Zealand. Proceedings... Massey University, 2018. Digital Archive.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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106. | | ZANELLA, R.; MORES, N.; MORES, M. A. Z.; PEIXOTO, J. de O.; ZANELLA, E. L.; ZANELLA, J. R. C.; IBELLI, A. M. G.; GAVA, D.; CANTAO, M. E.; LEDUR, M. C. Genome-wide association study of periweaning failure-to-thrive syndrome (PFTS) in pigs. Veterinary Record, v. 178, n. 26, p. 1-7, 2016.Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
Biblioteca(s): Embrapa Suínos e Aves. |
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107. | | ZANELLA, R.; MORES, N.; MORES, M. A. Z.; PEIXOTO, J. de O.; ZANELLA, E. L.; ZANELLA, J. R. C.; IBELLI, A. M. G.; GAVA, D.; CANTAO, M. E.; LEDUR, M. C. Genome-wide association study of periweaning failure-to-thrive syndrome (PFTS) in swine suggests genes involved with depression. In: INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, 24., Dublin. Abstracts Book... Dublin, Ireland: IPVS, 2016. p. 352.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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108. | | MOREIRA, G. C. M.; BOSCHIERO, C.; CESAR, A. S. M.; REECY, J. M.; GODOY, T. F.; TREVISOLI, P. A.; CANTAO, M. E.; LEDUR, M. C.; IBELLI, A. M. G.; MOURA, A. S. M. T.; GARRICK, D.; COUTINHO, L. L. A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens. BMC Genomics, v. 19, n. 374, 2018.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Suínos e Aves. |
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109. | | FERNANDES, A. C.; SILVA, V. H. da; GOES, C. P.; MOREIRA, G. C. M.; GODOY, T. F.; IBELLI, A. M. G.; PEIXOTO, J. de O.; CANTAO, M. E.; LEDUR, M. C.; REZENDE, F. M. de; COUTINHO, L. L. Genome-wide detection of CNVs and their association with performance traits in broilers. BMC Genomics, v. 22, n. 354, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Suínos e Aves. |
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110. | | KOWACIC, R. da C.; IBELLI, A. M. G.; PEIXOTO, J. de O.; MORES, N.; MORES, M. A. Z.; CANTAO, M. E.; SAVOLDI, I. R.; CARMO, K. B. do; COUTINHO, L. L.; LEDUR, M. C. Genes Col16A1 e ANGPT4 são menos expressos em suínos afetados com osteocondrose latens. In: JORNADA DE INICIAÇÃO CIENTÍFICA, 10., 2016, Concórdia. Anais... Concórdia: Embrapa Suínos e Aves: UNC, 2017. p. 15-16. JINC.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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111. | | ROMANO, G. de S.; IBELLI, A. M. G.; PEIXOTO, J. de O.; CANTAO, M. E.; WEBER, T.; MORES, M. A. Z.; MORES, N.; PEDROSA, V. B.; PINTO, L. F. B.; COUTINHO, L. L.; LEDUR, M. C. Genes diferencialmente expressos no transcriptoma de suínos normais e afetados com hérnia escrotal. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto. Anais... Ribeirão Preto: SBMA, 2017. 1 CD-ROM.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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112. | | RODRIGUES, A. F. G.; IBELLI, A. M. G.; PEIXOTO, J. de O.; CANTAO, M. E.; OLIVEIRA, H. C. de; SAVOLDI, I. R.; SOUZA, M. R.; MORES, M. A. Z.; CARREÑO, L. O. D.; LEDUR, M. C. Genes and SNPs Involved with Scrotal and Umbilical Hernia in Pigs. Genes, v. 12, n. 166, 2021.Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Suínos e Aves. |
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113. | | PANDOLFI, J. R. C.; IBELLI, A. M. G.; CANTAO, M. E.; PEIXOTO, J. de O.; KRABBE, E. L.; AVILA, V. S. de; KRAMER, B.; ZANELLA, R.; JAENISCH, F. R. F.; MORES, M. A. Z.; COUTINHO, L. L.; LEDUR, M. C. Genetic characterization of poultry gut microbiota by 16S-rRNA gene sequencing. In: CONGRESSO BRASILEIRO DE MICROBIOLOGIA, 28., 2015, Florianópolis. Resumos. Florianópolis: Sociedade Brasileira de Microbiologia, 2015.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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114. | | PEIXOTO, J. de O.; IBELLI, A. M. G.; CANTAO, M. E.; ZANELLA, R.; JAENISCH, F. R. F.; GIACHETTO, P. F.; SETTLES, M. L.; PANDOLFI, J. R. C.; COUTINHO, L. L.; LEDUR, M. C. Expressão gênica diferencial envolvida com condronecrose bacteriana com osteomielite em frangos de corte com 35 dias de idade. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 52., 2015, Belo Horizonte. Zootecnia: otimizando recursos e potencialidades: anais. Brasília, DF: Sociedade Brasileira de Zootecnia, 2015.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Suínos e Aves. |
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115. | | MARCHESI, J. A. P.; ONO, R. K.; CANTAO, M. E.; IBELLI, A. M. G.; PEIXOTO, J. de O.; MOREIRA, G. C. M.; GODOY, T. F.; COUTINHO, L. L.; MUNARI, D. P.; LEDUR, M. C. Exploring the genetic architecture of feed efficiency traits in chickens. Scientific Reports, v. 11, n. 4622, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Suínos e Aves. |
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116. | | SALMÓRIA, L. A.; IBELLI, A. M. G.; TAVERNARI, F. de C.; PEIXOTO, J. de O.; MARCELINO, D. E. P.; DAL PIZZOL, M. S.; CANTAO, M. E.; LEDUR, M. C. Expressão diferencial de genes relacionados ao metabolismo de cálcio e fósforo em poedeiras com diferentes níveis de desempenho. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL ON-LINE, 14., 2021. Anais.... Chapecó: UDESC: Concórdia: Embrapa Suínos e Aves, 2022.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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117. | | MARCHESI, J. A. P.; ONO, R. K.; IBELLI, A. M. G.; BUZANSKAS, M. E.; CANTAO, M. E.; PEIXOTO, J. de O.; MUNARI, D. P.; COUTINHO, L. L.; LEDUR, M. C. Estudo de associação global do genoma revela novos genes e regiões genômicas associadas à conversão alimentar em frangos de corte. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto. Anais... Ribeirão Preto: SBMA, 2017. 1 CD-ROM.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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118. | | FERNANDES, L. T.; PEIXOTO, J. de O.; DAL PIZZOL, M. S.; IBELLI, A. M. G.; MORES, M. A. Z.; TAVERNARI, F. de C.; COLDEBELLA, A.; CANTAO, M. E.; LEDUR, M. C. Effects of age, line and diet on the occurrence of white striping lesions in broiler breast muscle. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 12., 2022, Rotterdam. Proceedings: technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. Wageningen: Wageningen Academic Publishers, 2022. Edited by R. F. Veerkamp and Y. de Haas.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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119. | | IBELLI, A. M. G.; SALMÓRIA, L. A.; TAVERNARI, F. de C.; PEIXOTO, J. de O.; MARCELINO, D. E. P.; DAL PIZZOL, M. S.; CANTAO, M. E.; LEDUR, M. C. Identificação e caracterização de variantes funcionais no transcriptoma de duodeno em poedeiras. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL ON-LINE, 14., 2021. Anais.... Chapecó: UDESC: Concórdia: Embrapa Suínos e Aves, 2022.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Suínos e Aves. |
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120. | | CAMPOS, F. G.; IBELLI, A. M. G.; OLIVEIRA, H. C. de; CANTAO, M. E.; PEIXOTO, J. de O.; TEIXEIRA, S. A.; COSTA, K. A.; LEDUR, M. C.; GUIMARÃES, S. E. F. Manual para identificação de RNAs longos não codificantes (lncRNAs) por meio de ferramentas bioinformáticas na análise de transcriptomas. Concórdia: Embrapa Suínos e Aves, 2023. 41 p. (Embrapa Suínos e Aves. Documentos, 244).Biblioteca(s): Embrapa Suínos e Aves. |
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Registros recuperados : 151 | |
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