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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital. |
Data corrente: |
24/01/2023 |
Data da última atualização: |
14/03/2023 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
CAMARGO, A. P.; SOUZA, R. S. C. de; JOSE, J.; GERHARDT, I. R.; DANTE, R. A.; MUKHERJEE, S.; HUNTEMANN, M.; KYRPIDES, N. C.; CARAZZOLLE, M. F.; ARRUDA, P. |
Afiliação: |
ANTONIO P. CAMARGO, UNIVERSIDADE ESTADUAL DE CAMPINAS; RAFAEL S. C. DE SOUZA, UNIVERSIDADE ESTADUAL DE CAMPINAS, SYMBIOMICS MICROBIOME SOLUTIONS; JULIANA JOSE, UNIVERSIDADE ESTADUAL DE CAMPINAS; ISABEL RODRIGUES GERHARDT, CNPTIA; RICARDO AUGUSTO DANTE, CNPTIA; SUPRATIM MUKHERJEE, DEPARTMENT OF ENERGY JOINT GENOME INSTITUTE; MARCEL HUNTEMANN, DEPARTMENT OF ENERGY JOINT GENOME INSTITUTE; NIKOS C. KYRPIDES, DEPARTMENT OF ENERGY JOINT GENOME INSTITUTE; MARCELO F. CARAZZOLLE, UNIVERSIDADE ESTADUAL DE CAMPINAS; PAULO ARRUDA, UNIVERSIDADE ESTADUAL DE CAMPINAS. |
Título: |
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. |
Ano de publicação: |
2023 |
Fonte/Imprenta: |
The ISME Journal, v. 17, n. 3, p. 354-370, Mar. 2023. |
DOI: |
https://doi.org/10.1038/s41396-022-01345-1 |
Idioma: |
Inglês |
Conteúdo: |
The substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing potential via horizontal gene transfer and might be also involved in nitrification via a metabolic handoff association with Binataceae. We highlight that plant-associated microbial populations in the campos rupestres harbor a genetic repertoire with potential to increase nutrient availability and that the microbiomes of biodiversity hotspots can reveal novel mechanisms of nutrient turnover. MenosThe substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing pot... Mostrar Tudo |
Palavras-Chave: |
Campos rupestres; Data sequencing; Ecossistema de pastagens; Microbioma vegetal; Plant microbiomes; Sequenciamento de dados; Soil microbes. |
Thesagro: |
Bactéria; Genoma; Nitrogênio. |
Thesaurus Nal: |
Genome; Nitrogen; Velloziaceae. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1151181/1/AP-Plant-microbiomes-2022.pdf
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Marc: |
LEADER 03054naa a2200397 a 4500 001 2151181 005 2023-03-14 008 2023 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1038/s41396-022-01345-1$2DOI 100 1 $aCAMARGO, A. P. 245 $aPlant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.$h[electronic resource] 260 $c2023 520 $aThe substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing potential via horizontal gene transfer and might be also involved in nitrification via a metabolic handoff association with Binataceae. We highlight that plant-associated microbial populations in the campos rupestres harbor a genetic repertoire with potential to increase nutrient availability and that the microbiomes of biodiversity hotspots can reveal novel mechanisms of nutrient turnover. 650 $aGenome 650 $aNitrogen 650 $aVelloziaceae 650 $aBactéria 650 $aGenoma 650 $aNitrogênio 653 $aCampos rupestres 653 $aData sequencing 653 $aEcossistema de pastagens 653 $aMicrobioma vegetal 653 $aPlant microbiomes 653 $aSequenciamento de dados 653 $aSoil microbes 700 1 $aSOUZA, R. S. C. de 700 1 $aJOSE, J. 700 1 $aGERHARDT, I. R. 700 1 $aDANTE, R. A. 700 1 $aMUKHERJEE, S. 700 1 $aHUNTEMANN, M. 700 1 $aKYRPIDES, N. C. 700 1 $aCARAZZOLLE, M. F. 700 1 $aARRUDA, P. 773 $tThe ISME Journal$gv. 17, n. 3, p. 354-370, Mar. 2023.
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Embrapa Agricultura Digital (CNPTIA) |
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Registros recuperados : 13 | |
3. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | BASTOS, C. R.; POMMER, C. V.; CAMARGO, A. P.; BOVI, V.; CIONE, J.; RIBEIRO, R. F. Efeito da geada nas características tecnológicas de algumas variedades de cana-de-açúcar. Pesquisa Agropecuária Brasileira, Brasília, v.18, n.6, p. 565-574, jun. 1983. Título em português: Effect of a freeze on some technological characteristics of several sugar cane varieties.Biblioteca(s): Embrapa Unidades Centrais. |
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9. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | FEITOSA FILHO, J. C.; BOTREL, T. A.; CAVALCANTE, L. F.; PINTO, J. M.; CAMARGO, A. P. de. Aeração, cloração e uso de permanganato de potassio no tratamento do excesso de íons de ferro e manganês em água de irrigação. In: CONGRESSO BRASILEIRO DE ENGENHARIA AGRICOLA, 38., 2009, Juazeiro, Petrolina. Planejamento da bacia hidrográfica e o desenvolvimento da agricultura: anais. Juazeiro, Petrolina: UNIVASF: Embrapa Semiárido: CEFET: SBEA, 2009. 1 CD-ROM.Tipo: Artigo em Anais de Congresso / Nota Técnica |
Biblioteca(s): Embrapa Semiárido. |
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10. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CAMARGO, A. P. de; RAIJ, B. V.; CANTARELLA, H.; ROCHA, T. R. da; NAGAI, V.; MASCARENHAS, H. A. A. Efeito da calagem nas produções de cinco cultivos de milho, seguidos de algodão e soja. Pesquisa Agropecuária Brasileira, Brasília, V.17, n.7, p. 1007-1012, jul. 1982. Título em inglês: Effect of liming on yields of five successive crops of maize followed by cotton and soybeans.Biblioteca(s): Embrapa Unidades Centrais. |
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11. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CAMARGO, A. P.; SOUZA, R. S. C. de; JOSE, J.; GERHARDT, I. R.; DANTE, R. A.; MUKHERJEE, S.; HUNTEMANN, M.; KYRPIDES, N. C.; CARAZZOLLE, M. F.; ARRUDA, P. Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME Journal, v. 17, n. 3, p. 354-370, Mar. 2023.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital. |
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12. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | PAPA, D. de A.; FIGUEIREDO, E. O.; OLIVEIRA, M. V. N. d'; RODRIGUEZ, L. C. E.; CAMARGO, A. P.; PRATA, G. A.; AMARAL, L. G. de C.; LARANJA, D. C. F. Uso do LiDAR no manejo florestal. Rio Branco, AC: Embrapa Acre, 2017. 1 folder.Tipo: Folder/Folheto/Cartilha |
Biblioteca(s): Embrapa Acre. |
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13. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CAMARGO, A. P.; SOUZA, R. S. C. de; COSTA, P. de B.; GERHARDT, I. R.; DANTE, R. A.; TEODORO, G. S.; ABRAHÃO, A.; LAMBERS, H.; CARAZZOLLE, M. F.; HUNTEMANN, M.; CLUM, A.; FOSTER, B.; FOSTER, B.; ROUX, S.; PALANIAPPAN, K.; VARGHESE, N.; MUKHERJEE, S.; REDDY, T. B. K.; DAUM, C.; COPELAND, A.; CHENM U, M. A.; IVANOVA, N. N.; KYRPIDES, N. C.; PENNACCHIO, C.; ELOE-FADROSH, E. A.; ARRUDA, P.; OLIVEIRA, R. S. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Scientific Data, v. 6, p. 1-11, 2019. Article number: 140.Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
Biblioteca(s): Embrapa Agricultura Digital. |
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Registros recuperados : 13 | |
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