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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
06/11/2023 |
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Data da última atualização: |
07/12/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SAAVEDRA, L. M.; CAIXETA, E. T.; BARKA, G. D.; BORÉM, A.; ZAMBOLIM, L.; NASCIMENTO, M.; CRUZ, C. D.; OLIVEIRA, A. C. B. de; PEREIRA, A. A. |
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Afiliação: |
LAURA MARITZA SAAVEDRA, UNIVERSIDADE FEDERAL DE VIÇOSA; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; GELETA DUGASSA BARKA, ADAMA SCIENCE AND TECHNOLOGY UNIVERSITY; ALUÍZIO BORÉM, UNIVERSIDADE FEDERAL DE VIÇOSA; LAÉRCIO ZAMBOLIM, UNIVERSIDADE FEDERAL DE VIÇOSA; MOYSÉS NASCIMENTO, UNIVERSIDADE FEDERAL DE VIÇOSA; COSME DAMIÃO CRUZ, UNIVERSIDADE FEDERAL DE VIÇOSA; ANTONIO CARLOS BAIAO DE OLIVEIRA, CNPCa; ANTONIO ALVES PEREIRA, EMPRESA DE PESQUISA AGROPECUÁRIA DE MINAS GERAIS. |
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Título: |
Marker-assisted recurrent selection for pyramiding leaf rust and coffee berry disease resistance alleles in Coffea Arabica L. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Genes, v. 14, n. 1, 2023. |
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Páginas: |
18 p. |
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DOI: |
https://doi.org/10.3390/ genes14010189 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: In this study, marker-assisted recurrent selection was evaluated for pyramiding resistance gene alleles against coffee leaf rust (CLR) and coffee berry diseases (CBD) in Coffea arabica. A total of 144 genotypes corresponding to 12 hybrid populations from crosses between eight parent plants with desired morphological and agronomic traits were evaluated. Molecular data were used for cross-certification, diversity study and resistance allele marker-assisted selection (MAS) against the causal agent of coffee leaf rust (Hemileia vastatrix) and coffee berry disease (Colletotrichum kahawae). In addition, nine morphological and agronomic traits were evaluated to determine the components of variance, select superior hybrids, and estimate genetic gain. From the genotypes evaluated, 134 were confirmed as hybrids. The genetic diversity between and within populations was 75.5% and 24.5%, respectively, and the cluster analysis revealed three primary groups. Pyramiding of CLR and CBD resistance genes was conducted in 11 genotypes using MAS. A selection intensity of 30% resulted in a gain of over 50% compared to the original population. Selected hybrids with increased gain also showed greater genetic divergence in addition to the pyramided resistance alleles. The strategies used were, therefore, efficient to select superior coffee hybrids for recurrent selection programs and could be used as a source of resistance in various crosses. |
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Thesaurus Nal: |
Coffea arabica var. arabica; Coffee berry disease; Leaf rust. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1157818/1/Marker-Assisted-Recurrent-Selection.pdf
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Marc: |
LEADER 02283naa a2200277 a 4500
001 2157818
005 2023-12-07
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3390/ genes14010189$2DOI
100 1 $aSAAVEDRA, L. M.
245 $aMarker-assisted recurrent selection for pyramiding leaf rust and coffee berry disease resistance alleles in Coffea Arabica L.$h[electronic resource]
260 $c2023
300 $a18 p.
520 $aAbstract: In this study, marker-assisted recurrent selection was evaluated for pyramiding resistance gene alleles against coffee leaf rust (CLR) and coffee berry diseases (CBD) in Coffea arabica. A total of 144 genotypes corresponding to 12 hybrid populations from crosses between eight parent plants with desired morphological and agronomic traits were evaluated. Molecular data were used for cross-certification, diversity study and resistance allele marker-assisted selection (MAS) against the causal agent of coffee leaf rust (Hemileia vastatrix) and coffee berry disease (Colletotrichum kahawae). In addition, nine morphological and agronomic traits were evaluated to determine the components of variance, select superior hybrids, and estimate genetic gain. From the genotypes evaluated, 134 were confirmed as hybrids. The genetic diversity between and within populations was 75.5% and 24.5%, respectively, and the cluster analysis revealed three primary groups. Pyramiding of CLR and CBD resistance genes was conducted in 11 genotypes using MAS. A selection intensity of 30% resulted in a gain of over 50% compared to the original population. Selected hybrids with increased gain also showed greater genetic divergence in addition to the pyramided resistance alleles. The strategies used were, therefore, efficient to select superior coffee hybrids for recurrent selection programs and could be used as a source of resistance in various crosses.
650 $aCoffea arabica var. arabica
650 $aCoffee berry disease
650 $aLeaf rust
700 1 $aCAIXETA, E. T.
700 1 $aBARKA, G. D.
700 1 $aBORÉM, A.
700 1 $aZAMBOLIM, L.
700 1 $aNASCIMENTO, M.
700 1 $aCRUZ, C. D.
700 1 $aOLIVEIRA, A. C. B. de
700 1 $aPEREIRA, A. A.
773 $tGenes$gv. 14, n. 1, 2023.
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Registro original: |
Embrapa Café (CNPCa) |
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Registro Completo
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
26/09/2017 |
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Data da última atualização: |
26/09/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
PERSEGUINI, J. M. K. C.; OBLESSUC, P. R.; ROSA, J. R. B. F.; GOMES, K. A.; CHIORATO, A. F.; CARBONELL, S. A. M.; GARCIA, A. A. F.; VIANELLO, R. P.; BENCHIMOL-REIS, L. L. |
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Afiliação: |
JULIANA MORINI KÜPPER CARDOSO, IAC; PAULA RODRIGUES OBLESSUC, LABORATÓRIO NACIONAL DE BIOCIÊNCIAS, Campinas-SP; JOÃO RICARDO BACHEGA FEIJÓ ROSA, ESALQ; KLEBER ALVES GOMES, IAC; ALISSON FERNANDO CHIORATO, IAC; SERGIO AUGUSTO MORAIS CARBONELL, IAC; ANTONIO AUGUSTO FRANCO GARCIA, ESALQ; ROSANA PEREIRA VIANELLO, CNPAF; LUCIANA LASRY BENCHIMOL-REIS, IAC. |
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Título: |
Genome-wide association studies of anthracnose and angular leaf spot resistance in common bean (Phaseolus vulgaris L.). |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
Plos One, v. 11, n. 3, e0150506, Mar. 2016. |
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DOI: |
10.1371/journal.pone.0150506 |
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Idioma: |
Inglês |
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Conteúdo: |
The common bean (Phaseolus vulgaris L.) is the world?s most important legume for human consumption. Anthracnose (ANT; Colletotrichum lindemuthianum) and angular leaf spot (ALS; Pseudocercospora griseola) are complex diseases that cause major yield losses in common bean. Depending on the cultivar and environmental conditions, anthracnose and angular leaf spot infections can reduce crop yield drastically. This study aimed to estimate linkage disequilibrium levels and identify quantitative resistance loci (QRL) controlling resistance to both ANT and ALS diseases of 180 accessions of common bean using genomewide association analysis. A randomized complete block design with four replicates was performed for the ANT and ALS experiments, with four plants per genotype in each replicate. Association mapping analyses were performed for ANT and ALS using a mixed linear model approach implemented in TASSEL. A total of 17 and 11 significant statistically associations involving SSRs were detected for ANT and ALS resistance loci, respectively. Using SNPs, 21 and 17 significant statistically associations were obtained for ANT and angular ALS, respectively, providing more associations with this marker. The SSR-IAC167 and PvM95 markers, both located on chromosome Pv03, and the SNP scaffold00021_89379, were associated with both diseases. The other markers were distributed across the entire common bean genome, with chromosomes Pv03 and Pv08 showing the greatest number of loci associated with ANT resistance. The chromosome Pv04 was the most saturated one, with six markers associated with ALS resistance. The telomeric region of this chromosome showed four markers located between approximately 2.5 Mb and 4.4 Mb. Our results demonstrate the great potential of genome-wide association studies to identify QRLs related to ANT and ALS in common bean. The results indicate a quantitative and complex inheritance pattern for both diseases in common bean. Our findings will contribute to more effective screening of elite germplasm to find resistance alleles for marker-assisted selection in breeding programs. MenosThe common bean (Phaseolus vulgaris L.) is the world?s most important legume for human consumption. Anthracnose (ANT; Colletotrichum lindemuthianum) and angular leaf spot (ALS; Pseudocercospora griseola) are complex diseases that cause major yield losses in common bean. Depending on the cultivar and environmental conditions, anthracnose and angular leaf spot infections can reduce crop yield drastically. This study aimed to estimate linkage disequilibrium levels and identify quantitative resistance loci (QRL) controlling resistance to both ANT and ALS diseases of 180 accessions of common bean using genomewide association analysis. A randomized complete block design with four replicates was performed for the ANT and ALS experiments, with four plants per genotype in each replicate. Association mapping analyses were performed for ANT and ALS using a mixed linear model approach implemented in TASSEL. A total of 17 and 11 significant statistically associations involving SSRs were detected for ANT and ALS resistance loci, respectively. Using SNPs, 21 and 17 significant statistically associations were obtained for ANT and angular ALS, respectively, providing more associations with this marker. The SSR-IAC167 and PvM95 markers, both located on chromosome Pv03, and the SNP scaffold00021_89379, were associated with both diseases. The other markers were distributed across the entire common bean genome, with chromosomes Pv03 and Pv08 showing the greatest number of loci associated with AN... Mostrar Tudo |
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Thesagro: |
Antracnose; Colletotrichum lindemuthianum; Feijão; Genoma; Mancha foliar; Phaseolus vulgaris. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/164342/1/CNPAF-2016-plosone.pdf
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Marc: |
LEADER 03030naa a2200301 a 4500
001 2076304
005 2017-09-26
008 2016 bl uuuu u00u1 u #d
024 7 $a10.1371/journal.pone.0150506$2DOI
100 1 $aPERSEGUINI, J. M. K. C.
245 $aGenome-wide association studies of anthracnose and angular leaf spot resistance in common bean (Phaseolus vulgaris L.).$h[electronic resource]
260 $c2016
520 $aThe common bean (Phaseolus vulgaris L.) is the world?s most important legume for human consumption. Anthracnose (ANT; Colletotrichum lindemuthianum) and angular leaf spot (ALS; Pseudocercospora griseola) are complex diseases that cause major yield losses in common bean. Depending on the cultivar and environmental conditions, anthracnose and angular leaf spot infections can reduce crop yield drastically. This study aimed to estimate linkage disequilibrium levels and identify quantitative resistance loci (QRL) controlling resistance to both ANT and ALS diseases of 180 accessions of common bean using genomewide association analysis. A randomized complete block design with four replicates was performed for the ANT and ALS experiments, with four plants per genotype in each replicate. Association mapping analyses were performed for ANT and ALS using a mixed linear model approach implemented in TASSEL. A total of 17 and 11 significant statistically associations involving SSRs were detected for ANT and ALS resistance loci, respectively. Using SNPs, 21 and 17 significant statistically associations were obtained for ANT and angular ALS, respectively, providing more associations with this marker. The SSR-IAC167 and PvM95 markers, both located on chromosome Pv03, and the SNP scaffold00021_89379, were associated with both diseases. The other markers were distributed across the entire common bean genome, with chromosomes Pv03 and Pv08 showing the greatest number of loci associated with ANT resistance. The chromosome Pv04 was the most saturated one, with six markers associated with ALS resistance. The telomeric region of this chromosome showed four markers located between approximately 2.5 Mb and 4.4 Mb. Our results demonstrate the great potential of genome-wide association studies to identify QRLs related to ANT and ALS in common bean. The results indicate a quantitative and complex inheritance pattern for both diseases in common bean. Our findings will contribute to more effective screening of elite germplasm to find resistance alleles for marker-assisted selection in breeding programs.
650 $aAntracnose
650 $aColletotrichum lindemuthianum
650 $aFeijão
650 $aGenoma
650 $aMancha foliar
650 $aPhaseolus vulgaris
700 1 $aOBLESSUC, P. R.
700 1 $aROSA, J. R. B. F.
700 1 $aGOMES, K. A.
700 1 $aCHIORATO, A. F.
700 1 $aCARBONELL, S. A. M.
700 1 $aGARCIA, A. A. F.
700 1 $aVIANELLO, R. P.
700 1 $aBENCHIMOL-REIS, L. L.
773 $tPlos One$gv. 11, n. 3, e0150506, Mar. 2016.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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