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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
20/04/2006 |
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Data da última atualização: |
17/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
NARCISO, M. G.; YAMAGISHI, M. E. B.; QUINALIA, T.; BEZERRA, G. B. P.; NESHICH, G. |
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Afiliação: |
MARCELO GONCALVES NARCISO, CNPAF; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; THIAGO QUINALIA; GEORGE B. P. BEZERRA; GORAN NESHICH, CNPTIA. |
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Título: |
2D maps of protein interface surfaces. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 1. |
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Idioma: |
Inglês |
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Notas: |
X-meeting 2005. Presented posters. |
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Conteúdo: |
More than 50% of the Protein Data Bank - PDB - files have two or more chains. It is desirable to get a better understanding of how the protein complexes are gathered together. Although, surface complementarity is a key factor in complexes formation, physical-chemical properties also play an important role. Recently, the protein interface surfaces were rendered in 3D, and, over them, all the STING_DB physical-chemical properties could be painted, what greatly facilitated their analyses. In this work we propose an alternative way to visualize the protein interfaces. The 3D protein interface surfaces were modeled as Graphs and using the Shape Preserving algorithm, they were mapped onto the plane. This mapping introduce some inevitable deformation, nevertheless the local shape is preserved which is essential in the process of matching the corresponding regions in both surfaces. This matching task is almost impossible in 3D due the surface complexity in the space. |
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Palavras-Chave: |
Bioinformática; Interface de superfícies; Mapa bidimensional. |
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Thesagro: |
Mapa; Proteína. |
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Thesaurus Nal: |
Bioinformatics. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 01787nam a2200241 a 4500
001 1008757
005 2020-01-17
008 2005 bl uuuu u00u1 u #d
100 1 $aNARCISO, M. G.
245 $a2D maps of protein interface surfaces.$h[electronic resource]
260 $aIn: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 1.$c2005
500 $aX-meeting 2005. Presented posters.
520 $aMore than 50% of the Protein Data Bank - PDB - files have two or more chains. It is desirable to get a better understanding of how the protein complexes are gathered together. Although, surface complementarity is a key factor in complexes formation, physical-chemical properties also play an important role. Recently, the protein interface surfaces were rendered in 3D, and, over them, all the STING_DB physical-chemical properties could be painted, what greatly facilitated their analyses. In this work we propose an alternative way to visualize the protein interfaces. The 3D protein interface surfaces were modeled as Graphs and using the Shape Preserving algorithm, they were mapped onto the plane. This mapping introduce some inevitable deformation, nevertheless the local shape is preserved which is essential in the process of matching the corresponding regions in both surfaces. This matching task is almost impossible in 3D due the surface complexity in the space.
650 $aBioinformatics
650 $aMapa
650 $aProteína
653 $aBioinformática
653 $aInterface de superfícies
653 $aMapa bidimensional
700 1 $aYAMAGISHI, M. E. B.
700 1 $aQUINALIA, T.
700 1 $aBEZERRA, G. B. P.
700 1 $aNESHICH, G.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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| Registros recuperados : 5 | |
| 3. |  | NESHICH, G.; BORRO, L. C.; HIGA, R. H.; KUSER, P. R.; YAMAGISHI, M. E. B.; FRANCO, E. H.; KRAUCHENCO, J. N.; FILETO, R.; RIBEIRO, A. A.; BEZERRA, G. B. P.; VELLUDO, T. M.; JIMENEZ, T. S.; FURUKAWA, N.; TESHIMA, H.; KITAJIMA, K.; BAVA, A.; SARAI, A.; TOGAWA, R. C.; MANCINI, A. L. The Diamond Sting server. Nucleic Acids Research, v. 33, W29-W35, 2005.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 4. | | NESHICH, G.; YAMAGISHI, M. E. B.; ROCCHIA, W.; MANCINI, A. L.; FALCAO, P. R. K.; FILETO, R.; BAUDET, C.; PINTO, I. P.; MONTAGNER, A. J.; PALANDRANI, J. F.; KRAUCHENCO, J. N.; TORRES, R. C.; BEZERRA, G. B. P.; SOUZA, S.; TOGAWA, R. C.; HIGA, R. H. Protein structure analysis and visualization using Java Protein Dossier. In: INTERNATIONAL CONFERENCE ON CHEMOMETRICS AND BIOINFORMATICS IN ASIA, 2004, Shanghai. Proceedings... Shanghai: [s.n.], 2004. 1 p. CCBA 2004. Na publicação: Paula R. Kuser.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 5. | | YAMAGISHI, M. E. B.; BEZERRA, G. B. P.; QUINALIA, T.; KUSER, P. R.; HIGA, R. H.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; CRUZ, S. A. B.; OLIVEIRA, S. R. M.; NESHICH, G.; RAY, N.; MAIGRET, B. An interative protein interface surface Java Viewer. In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 17. X-meeting 2005. Presented posters.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 5 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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