Data/hora: 22/06/2024 01:01:22

Biblioteca(s): | Embrapa Arroz e Feijão.
Data corrente: | 12/12/2011
Data da última atualização: | 24/01/2013
Autoria: | SOUZA, T. L. P. O.; BARROS, E. G. de; BELLATO, C. M.; HWANG, E.-Y.; CREGAN, P. B.; PASTOR-CORRALES, M. A.
Afiliação: | THIAGO LIVIO PESSOA OLIV DE SOUZA, CNPAF; EVERALDO G. DE BARROS, UNIVERSIDADE FEDERAL DE VIÇOSA; CLAUDIA M. BELLATO, USDA; EUN-YOUNG HWANG, USDA; PERRY B. CREGAN, USDA; MARCIAL A. PASTOR-CORRALES, USDA.
Título: | Single nucleotide polymorphism discovery in common bean.
Ano de publicação: | 2012
Fonte/Imprenta: | Molecular Breeding, Dordrecht, v. 30, p. 419-428, 2012.
DOI: | DOI 10.1007/s11032-011-9632-4
Idioma: | Inglês
Conteúdo: | Single nucleotide polymorphisms (SNPs) were discovered in common bean (Phaseolus vulgaris L.) via resequencing of sequence-tagged sites (STSs) developed by PCR primers previously designed to soybean shotgun and bacterial artificial chromosome (BAC) end sequences, and by primers designed to common bean genes and microsatellite flanking regions. DNA fragments harboring SNPs were identified in single amplicons from six contrasting P. vulgaris genotypes of the Andean (Jalo EEP 558, G 19833, and AND 277) and Mesoamerican (BAT 93, DOR 364, and Ruda´) gene pools. These genotypes are the parents of three common bean recombinant inbred line mapping populations. From an initial set of 1,880 PCR primer pairs tested, 265 robust STSs were obtained, which could be sequenced in each one of the six common bean genotypes. In the resulting 131,120 bp of aligned sequence, a total of 677 SNPs were identified, including 555 single-base changes (295 transitions and 260 transversions) and 122 small nucleotide insertions/deletions (indels). The frequency of SNPs was 5.16 SNPs/kb and the mean nucleotide diversity, expressed as Halushka?s theta, was 0.00226. This work represents one of the first efforts aimed at detecting SNPs in P. vulgaris. The SNPs identified should be an important resource for common bean geneticists and breeders for quantitative trait locus discovery,marker-assisted selection, and map-based cloning. These SNPS will be also useful for diversity analysis and microsynteny studies among legume species.
Thesagro: | DNA; Feijão; Phaseolus vulgaris; Polimorfismo genético.
Thesaurus Nal: | Genome; Polymerase chain reaction; Single nucleotide polymorphism.
Categoria do assunto: | F Plantas e Produtos de Origem Vegetal
Registro original: | Embrapa Arroz e Feijão (CNPAF)
Exemplares: | CNPAF - (30971-1) - UPC - AP - PP - 2011.063 -  - 2011.063 - DIS