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Registro Completo |
Biblioteca(s): |
Embrapa Amazônia Oriental; Embrapa Cerrados; Embrapa Mandioca e Fruticultura; Embrapa Semiárido. |
Data corrente: |
07/05/2019 |
Data da última atualização: |
21/10/2020 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
ALBUQUERQUE, H. Y. G. de; OLIVEIRA, E. J. de; BRITO, A. C.; ANDRADE, L. R. B. de; CARMO, C. D. do; MORGANTE, C. V.; VIEIRA, E. A.; CUNHA, E. F. M.; FALEIRO, F. G. |
Afiliação: |
HILÇANA YLKA GONÇALVES DE ALBUQUERQUE, UFRB; EDER JORGE DE OLIVEIRA, CNPMF; ANA CARLA BRITO; LUCIANO ROGÉRIO BRAATZ DE ANDRADE, UFV; CÁTIA DIAS DO CARMO, UFRB; CAROLINA VIANNA MORGANTE, CPATSA; EDUARDO ALANO VIEIRA, CPAC; ELISA FERREIRA MOURA CUNHA, CPATU; FABIO GELAPE FALEIRO, CPAC. |
Título: |
Identification of duplicates in cassava germplasm banks based on single-nucleotide polymorphisms (SNPs). |
Ano de publicação: |
2019 |
Fonte/Imprenta: |
Scientia Agricola, v. 76, n. 4, p. 328-336, jul./aug., 2019. |
Idioma: |
Inglês |
Conteúdo: |
Genetic redundancy in cassava (Manihot esculenta Crantz) presents a challenge to efficient management of genetic resources. This study aimed to identify and define the ge-netic structure of duplicates in cassava germplasm from various Embrapa research units, using single-nucleotide polymorphism (SNP) markers. We evaluated 2,371 accessions with 20,712 SNPs. The identification of duplicates was performed based on multilocus genotypes (MLG), adopting a maximum genetic distance threshold of 0.05. The population structure was defined based on discriminant analysis of principal components (DAPC). A total of 1,757 unique and 614 duplicate accessions were identified. The redundancy of the collections ranged from 17% (Belém, PA/Brazil) to 39% (Petrolina, PE/Brazil), with an average of 21%. This redundancy between different research units is probably due to the historical sharing of accessions, as well as collections carried out in the same region, or even to the intense germplasm exchange between farmers with different genotype names. In terms of genetic structure, the 250 principal components explained 88 % of the genetic variation of the SNP markers and defined the hierar-chical structure of the duplicate cassava germplasm in 12 groups. Since heterotic groups have not yet been identified for cassava, crosses between accessions of the 12 DAPC groups may be promising. All MLGs were allocated within the same DAPC group, corroborating duplicate analyses yet still revealing high variability between groups that were quite distinct based on the first two discriminant functions. Our results contribute to optimizing the conservation of genetic resources, together with understanding diversity and its use in crop improvement. MenosGenetic redundancy in cassava (Manihot esculenta Crantz) presents a challenge to efficient management of genetic resources. This study aimed to identify and define the ge-netic structure of duplicates in cassava germplasm from various Embrapa research units, using single-nucleotide polymorphism (SNP) markers. We evaluated 2,371 accessions with 20,712 SNPs. The identification of duplicates was performed based on multilocus genotypes (MLG), adopting a maximum genetic distance threshold of 0.05. The population structure was defined based on discriminant analysis of principal components (DAPC). A total of 1,757 unique and 614 duplicate accessions were identified. The redundancy of the collections ranged from 17% (Belém, PA/Brazil) to 39% (Petrolina, PE/Brazil), with an average of 21%. This redundancy between different research units is probably due to the historical sharing of accessions, as well as collections carried out in the same region, or even to the intense germplasm exchange between farmers with different genotype names. In terms of genetic structure, the 250 principal components explained 88 % of the genetic variation of the SNP markers and defined the hierar-chical structure of the duplicate cassava germplasm in 12 groups. Since heterotic groups have not yet been identified for cassava, crosses between accessions of the 12 DAPC groups may be promising. All MLGs were allocated within the same DAPC group, corroborating duplicate analyses yet still revealing high variabi... Mostrar Tudo |
Palavras-Chave: |
Cultivo. |
Thesagro: |
Mandioca; Manihot Esculenta; Melhoramento Vegetal. |
Thesaurus Nal: |
Breeding; Breeding and Genetic Improvement; Cassava. |
Categoria do assunto: |
-- G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/199859/1/Indetification-2019.pdf
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Marc: |
LEADER 02636naa a2200301 a 4500 001 2110860 005 2020-10-21 008 2019 bl uuuu u00u1 u #d 100 1 $aALBUQUERQUE, H. Y. G. de 245 $aIdentification of duplicates in cassava germplasm banks based on single-nucleotide polymorphisms (SNPs).$h[electronic resource] 260 $c2019 520 $aGenetic redundancy in cassava (Manihot esculenta Crantz) presents a challenge to efficient management of genetic resources. This study aimed to identify and define the ge-netic structure of duplicates in cassava germplasm from various Embrapa research units, using single-nucleotide polymorphism (SNP) markers. We evaluated 2,371 accessions with 20,712 SNPs. The identification of duplicates was performed based on multilocus genotypes (MLG), adopting a maximum genetic distance threshold of 0.05. The population structure was defined based on discriminant analysis of principal components (DAPC). A total of 1,757 unique and 614 duplicate accessions were identified. The redundancy of the collections ranged from 17% (Belém, PA/Brazil) to 39% (Petrolina, PE/Brazil), with an average of 21%. This redundancy between different research units is probably due to the historical sharing of accessions, as well as collections carried out in the same region, or even to the intense germplasm exchange between farmers with different genotype names. In terms of genetic structure, the 250 principal components explained 88 % of the genetic variation of the SNP markers and defined the hierar-chical structure of the duplicate cassava germplasm in 12 groups. Since heterotic groups have not yet been identified for cassava, crosses between accessions of the 12 DAPC groups may be promising. All MLGs were allocated within the same DAPC group, corroborating duplicate analyses yet still revealing high variability between groups that were quite distinct based on the first two discriminant functions. Our results contribute to optimizing the conservation of genetic resources, together with understanding diversity and its use in crop improvement. 650 $aBreeding 650 $aBreeding and Genetic Improvement 650 $aCassava 650 $aMandioca 650 $aManihot Esculenta 650 $aMelhoramento Vegetal 653 $aCultivo 700 1 $aOLIVEIRA, E. J. de 700 1 $aBRITO, A. C. 700 1 $aANDRADE, L. R. B. de 700 1 $aCARMO, C. D. do 700 1 $aMORGANTE, C. V. 700 1 $aVIEIRA, E. A. 700 1 $aCUNHA, E. F. M. 700 1 $aFALEIRO, F. G. 773 $tScientia Agricola$gv. 76, n. 4, p. 328-336, jul./aug., 2019.
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Registro original: |
Embrapa Semiárido (CPATSA) |
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Registros recuperados : 10 | |
3. | | LIMA NETO, F. P.; SANTOS, C. A. F.; ALBUQUERQUE, H. Y. G. de. Three cycles of evaluation among monoembryonic mango progenies in the São Francisco River Valley, Brazil. In: INTERNATIONAL MANGO SYMPOSIUM, 10., 2013, Bávaro, Punta Cana, Dominican Republic. Mango: opportunities and challenges in the 21 century. Punta Cana, Dominican Republic: CEDAF: CONIAF, 2013. p. 30.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Semiárido. |
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5. | | ALVES, L. B.; ALBUQUERQUE, H. Y. G. de; CARMO, C. D. do; BRITO, A. C.; OLIVEIRA, E. J. de. Identificação molecular de duplicatas de acessos de mandioca com uso de marcadores SNP pertencentes ao cromossomo 1. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 10., 2016: Cruz das Almas, BA. Traduzindo ciência para o mundo : resumos. Brasília, DF : Embrapa, 2016.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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6. | | ALVES, E. O. S.; ALBUQUERQUE, H. Y. G.; LIMA NETO, F. P.; SOUZA, A. P.; CORRÊA, R. X. Desenvolvimento de novos marcadores microssatélites para Mangifera indica L. In: ENCONTRO DE GENÉTICA DO NORDESTE, 20.; SIMPÓSIO DE GENÉTICA HUMANA E MÉDICA DO NORDESTE, 2., 2014, Campina Grande. Ensino de genética e biologia molecular. Campina Grande: UFPB: Sociedade Brasileira de Genética, 2014.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Semiárido. |
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7. | | COELHO, W. C. P.; ALVES, S. T. L.; SANTANA, F. A. de; ALBUQUERQUE, H. Y. G. de; LIMA NETO, F. P. Caracterização das folhas, das inflorescências, do hábito de crescimento, da precocidade e do porte de acessos de mangueira do Banco Ativo de Germoplasma da Embrapa Semiárido. In: SIMPÓSIO DA REDE DE RECURSOS GENÉTICOS VEGETAIS DO NORDESTE, 2., 2015, Fortaleza. Valorização e uso da plantas Caatinga. Fortaleza: Embrapa Agroindústria Tropical: Universidade Federal do Ceará, 2015.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Semiárido. |
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9. | | ALVES, S. T. L.; ALBUQUERQUE, H. Y. G. de; SANTANA, F. A. de; RIBEIRO, I. C. N. dos S.; LIMA NETO, F. P. Caracterização do porte, do hábito de crescimento e da precocidade de acessos de mangueira do Banco Ativo de Germoplasma da Embrapa Semiárido. In: SIMPÓSIO DA REDE DE RECURSOS GENÉTICOS VEGETAIS DO NORDESTE, 2., 2015, Fortaleza. Valorização e uso da plantas Caatinga. Fortaleza: Embrapa Agroindústria Tropical: Universidade Federal do Ceará, 2015.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Semiárido. |
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10. | | ALBUQUERQUE, H. Y. G. de; OLIVEIRA, E. J. de; BRITO, A. C.; ANDRADE, L. R. B. de; CARMO, C. D. do; MORGANTE, C. V.; VIEIRA, E. A.; CUNHA, E. F. M.; FALEIRO, F. G. Identification of duplicates in cassava germplasm banks based on single-nucleotide polymorphisms (SNPs). Scientia Agricola, v. 76, n. 4, p. 328-336, jul./aug., 2019.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Amazônia Oriental; Embrapa Cerrados; Embrapa Mandioca e Fruticultura; Embrapa Semiárido. |
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Registros recuperados : 10 | |
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