| |
|
|
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Soja. |
|
Data corrente: |
02/09/2013 |
|
Data da última atualização: |
04/04/2022 |
|
Tipo da produção científica: |
Artigo em Periódico Indexado |
|
Autoria: |
LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. |
|
Afiliação: |
VALÉRIA S. LOPES-CAITAR; MAYRA C. C. G. DE CARVALHO, UENP; MARCIA KAMOGAE KUWAHARA, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI; WALDIR PEREIRA DIAS, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO. |
|
Título: |
Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. |
|
Ano de publicação: |
2013 |
|
Fonte/Imprenta: |
BMC Genomics, v. 14, article 577, 2013. |
|
Páginas: |
17 p. |
|
ISSN: |
1471-2164 |
|
DOI: |
10.1186/1471-2164-14-577 |
|
Idioma: |
Inglês |
|
Conteúdo: |
The Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function. MenosThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. ... Mostrar Tudo |
|
Thesagro: |
Soja. |
|
Thesaurus Nal: |
Soybeans. |
|
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/102608/1/genome-wide.pdf
|
|
Marc: |
LEADER 03155naa a2200265 a 4500
001 1965345
005 2022-04-04
008 2013 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/1471-2164-14-577$2DOI
100 1 $aLOPES-CAITAR, V. S.
245 $aGenome-wide analysis of the Hsp20 gene family in soybean$bcomprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses.$h[electronic resource]
260 $c2013
300 $a17 p.
520 $aThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function.
650 $aSoybeans
650 $aSoja
700 1 $aCARVALHO, M. C. C. G. de
700 1 $aLUANA M. DARBEN
700 1 $aKUWAHARA, M. K.
700 1 $aNEPOMUCENO, A. L.
700 1 $aDIAS, W. P.
700 1 $aABDELNOOR, R. V.
700 1 $aMARCELINO-GUIMARÃES, F. C.
773 $tBMC Genomics$gv. 14, article 577, 2013.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Soja (CNPSO) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
| Registros recuperados : 366 | |
| 161. |  | YAMANAKA, N.; SILVA, D. C. G. da; GILLI, J. R.; FUENTES, F. H.; YANG, Z.; POLIZEL, A.; SATO, H.; WATANABE, S.; BAN, T.; HOMMA, Y.; HARADA, K.; BROGIN, R. L.; NEPOMUCENO, A. L.; ABDELNOOR, R. V. Application of DNA markers for identifying genes for resistance to soybean diseases in South America and for evaluating genetic relationships among soybean gene pools. In: SUENAGA, K.; KUDO, H.; OSHIO, S. (Ed.). Comprehensive studies on the development of sustainable soybean production technology in South America. Tsukuba: JIRCAS, 2007. p. 47-53. (JIRCAS Working Report, 51).| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Soja. |
|    |
| 162. | | SILVA, D. C. G.; CAMOLESE, A. C.; BOTELHO, L.; YAMANAKA, N.; PINHEIRO, M.; FRAGA, T. R.; MAIA, M. S.; RINCÃO, M. P.; NOVAES, R. M. L.; ARIAS, C. A. A.; ABDELNOOR, R. V. Avaliação de populações segregantes de soja quanto à resistência à ferrugem asiática. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: resumos. Brasília, DF: Embrapa, 2012. p. 179, res. 312.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 163. | | SILVA, D. C. G.; CAMOLESE, A. C.; BOTELHO, L.; YAMANAKA, N.; PINHEIRO, M.; FRAGA, T. R.; MAIA, M. S.; RINCÃO, M. P.; NOVAES, R. M. L.; ARIAS, C. A. A.; ABDELNOOR, R. V. Avaliação de populações segregantes de soja quanto à resistência à ferrugem asiática. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: anais. Brasília, DF: Embrapa, 2012. 4 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 164. | | PAIVA, A. A. R.; YAMAGUCHI-SHINOZAKI, K.; YAMANAKA, N.; NAKASHIMA, K.; FARIAS, J. R. B.; MARIN, S. R. R.; SILVEIRA, C. A.; LUGLE, S. M.; BENEVENTI, M. A.; ABDELNOOR, R. V.; POLIZEL, A. M.; NEPOMUCENO, A. L. Análise da indução do promotor rd29A de Arabidopsis thaliana em soja após déficit hídrico através de ensaio histoquímico e fluorimétrico em plantas transformadas com a construção rd29A:GUS. In: CONGRESSO BRASILEIRO DE SOJA, 4., 2006, Londrina. Resumos... Londrina: Embrapa Soja, 2006. p. 46-47. Organizado por Odilon Ferreira Saraiva, Simone Ery Grosskopf.| Biblioteca(s): Embrapa Soja. |
| |
| 165. | | ROLLA, A. A. de P.; YAMAGUCHI-SHINOZAKI, K.; YAMANAKA, N.; NAKASHIMA, K.; FARIAS, J. R. B.; MARIN, S. R. R.; SILVEIRA, C. A.; LUGLE, S. M.; BENEVENTI, M. A.; ABDELNOOR, R. V.; POLIZEL, A. M.; NEPOMUCENO, A. L. Análise da indução do promotor rd29A de Arabidopsis thaliana em soja após déficit hídrico, através de ensaios histoquímico e fluorimétrico em plantas transformadas com a construção rd29A:GUS. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2., 2006, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2006. p. 171-174. (Embrapa Soja. Documentos, 276).| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 166. | | MORALES, A. M. R.; LEMOS, E. G. M.; WENDLAND, A.; FUGANTI, R.; ALVES, L. C.; MARIN, S. R. R.; BENEVENTI, M. A.; SILVA, J. F. V.; ARIAS, C. A. A.; DIAS, W. P.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Análise em soja da expressão de genes envolvidos na resistência à Meloidogyne javanica, através da técnica de PCR em tempo real. In: CONGRESSO BRASILEIRO DE SOJA, 4., 2006, Londrina. Resumos... Londrina: Embrapa Soja, 2006. p. 47-48. Organizado por Odilon Ferreira Saraiva, Simone Ery Grosskopf.| Biblioteca(s): Embrapa Soja. |
| |
| 167. | | FUGANTI, R.; MACHADO, M. F. P. S.; SILVA, J. F. V.; ARIAS, C. A. A.; MARIN, S. R. R.; BINNECK, E.; ABDELNOOR, R. V.; MARCELINO, F. C.; NEPOMUCENO, A. L. Análise da região promotora do gene Gmhsp 17.6-L em cultivares de soja resistentes e suscetíveis ao nematóide de galhas, Meloidogyne javanica. In: CONGRESSO BRASILEIRO DE GENÉTICA, 54., 2008, Salvador. Resumos... Salvador: SBG, 2008. p. 317.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 168. | | NASCIMENTO, L. C.; COSTA, G. G. L.; VIDAL, R. O.; MEYER, L.; BINNECK, E.; KIDO, E. A.; RODRIGUES, F.; KULCHESKI, F. R.; NEPOMUCENO, A. L.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. Bioinformatics analysis applied to genosoja project. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book ... Rio de Janeiro: AB3C, 2009. p. 22. X-Meeting 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 169. | | ARIAS, C. A. A.; ABDELNOOR, R. V.; BONATO, A. L. V.; MARIN, S. R. R.; GERALDI, I. O.; CALVO, E. S.; ALMEIDA, L. A. de; KIIHL, R. A. de S. Caracterização do germoplasma ativo de soja com marcadores moleculares tipo AFLP e microssatélites (04.2000.322.03). In: HOFFMANN-CAMPO, C.B.; SARAIVA, O.F. (Org.). Resultados de pesquisa da Embrapa Soja - 2000: ecofisiologia e biologia molecular. Londrina: Embrapa Soja, 2001. p. 36-38. (Embrapa Soja. Documentos, 164).| Biblioteca(s): Embrapa Soja. |
| |
| 170. | | NASCIMENTO, L. C.; COSTA, G. G. L.; MEYER, L.; BINNECK, E.; RODRIGUES, F.; KULCHESKI, F. R.; MARGIS, R.; KIDO, E. A.; MARCELINO, F. C.; NEPOMUCENO, A. L.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. A brazilian soybean database. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 6., 2010, Ouro Preto. Abstracts book... Ouro Preto: AB3C, 2010. p. 120. X-Meeting 2010.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 171. | | RODRIGUES, F. A.; MARCOLINO, J.; AMARAL, L. C.; ENGELS, C.; PEREIRA, R. M.; CARAZZOLLE, M. F.; OLIVEIRA, M. C. N. de; MARCELINO, F. C.; FARIAS, J. R. B.; NEUMAIER, N.; BINNECK, E.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Comparison of gene expression profiles of contrasting soybean cultivars in response to drought. In: CONGRESSO BRASILEIRO DE BIOTECNOLOGIA, 3., 2010, Fortaleza. Programa e resumos. Brasília, DF: SBBiotec, 2010. p. 189.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 172. | | BRASILEIRO-VIDAL, A. C.; BORTOLETI, K. C. A.; BENKO-ISEPPON, A. M.; VASCONCELOS, E. V. V.; FONSÊCA, A.; PEDROSA-HARAND, A.; OLIVEIRA, A. R. S.; BELARMINO, L. C.; AMORIM, L. L. B.; ABDELNOOR, R. V.; PANDOLFI, V.; MELO, N. F. Citogenética comparativa em leguminosas cultivadas. In: CONGRESO ARGENTINO DE GENÉTICA, 40., SIMPÓSIO LATINOAMERICANO DE CITOGENÉTICA Y EVOLUCIÓN, 3., JORNADAS SAG-NEA, 1., 2011, Buenos Aires. Journal of Basic & Apllied Genetics, v. 51, Supp., p. S19-20, 2011.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 173. | | CASTANHO, F. M.; KUWAHARA, M. K.; FERNANDES, G. P.; DARBEN, L. M.; YOKOYAMA, A.; SILVA, D. C. G. da; ABDELNOOR, R. V.; MEYER, M. C.; MARCELINO-GUIMARÃES, F. C. Characterization of Phakopsora pachyrhizi races from a broad geographical and temporal collection. In: CONGRESSO BRASILEIRO DE SOJA, 9., 2022, Foz do iguaçu, PR. Desafios para a produtividade sustentável no Mercosul: resumos. Brasília, DF: Embrapa, 2022. Regina Maria Villas Bôas de Campos Leite, Adeney de Freitas Bueno, editores técnicos. resumo 105. p. 124.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 174. | | SANTOS, J. V. M.; JOSHI, T.; KHAN, S. M.; LIU, Y.; WANG, J.; VUONG, T. D.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. F. de; VALLIYODAN, B.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. Copy-number variations reveal divergence among brazilian soybean cultivars. In: CONGRESSO BRASILEIRO DE SOJA, 7.; MERCOSOJA, 2015, Florianópolis. Tecnologia e mercado global: perspectivas para soja: anais. Londrina: Embrapa Soja, 2015. 3 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 175. | | ARIAS, C. A. A.; TOLEDO, J. F. F. de; ALMEIDA, L. A. de; PIPOLO, A. E.; CARNEIRO, G. E. de S.; ABDELNOOR, R. V.; RACHID, B. F.; RIBEIRO, A. S.; NEPOMUCENO, A. L. Melhoramento e biotecnologia: ferrugem da soja. In: CONGRESSO BRASILEIRO DE SOJA, 4., 2006, Londrina. Anais... Londrina: Embrapa Soja, 2006. p. 97-101. Organizado por Antonio Ricardo Panizzi, Odilon Ferreira Saraiva, Simone Ery Grosskopf.| Biblioteca(s): Embrapa Soja. |
| |
| 176. | | ROLLA, A. A. P.; KANAMORI, N.; FUGANTI-PAGLIARINI, R.; MARIN, S. R. R.; ENGLES, C.; YAMAGUCHI-SHINOZAKI; FARIAS, J. R. B.; NEUMAIER, N.; ABDELNOOR, R. V.; MARCELINO, F. C.; NEPOMUCENO, A. L. Molecular characterization of genetically modified soybean lines developed aiming to obtain drought tolerance. In: BRAZILIAN SYMPOSIUM ON PLANT MOLECULAR BIOLOGY, 3., 2011, Ilhéus. [Abstracts...]. [Ribeirão Preto]: SBG, 2011. 1 p. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 177. | | SILVA, D. C. G.; YAMANAKA, N.; BROGIN, R. L.; ARIAS, C. A. A.; NEPOMUCENO, A. L.; DI MAURO, A. O.; PEREIRA, S. S.; NOGUEIRA, L. M.; PASSIANOTTO, A. L. L.; ABDELNOOR, R. V. Molecular mapping of two loci that confer resistance to asian rust in soybean. Theoretical and Applied Genetics, v. 117, n. 1, p. 57-63, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Soja. |
| |
| 178. | | MORALES, A. M. A. P.; PEREIRA, A. A.; MURAKAMI, A. Y.; ROCHA, L. K. V.; STOLF, R.; BARBOSA, J. F.; ABDELNOOR, R. V.; MARCELINO, F. C.; BOREM, A.; LOUREIRO, M. E. Construção de biblioteca full length de soja inoculada com o fungo Phakopsora pachyrhizi. In: CONGRESSO BRASILEIRO DE FISIOLOGIA VEGETAL, 12., 2009, Fortaleza. Desafios para a produção de alimentos e bioenergia: [anais...]. Fortaleza: UFC: Embrapa Agroindústria Tropical, 2009. Seção trabalhos, 15.pdf. 1 CD-ROM. CBFV 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 179. | | STOLF-MOREIRA, R.; MEDRI, M. E.; NEUMAIER, N.; LEMOS, N. G.; BROGIN, R. L.; MARCELINO, F. C.; OLIVEIRA, M. C. N. de; FARIAS, J. R. B.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Cloning and quantitative expression analysis of drought-induced genes in soybean. Genetics and Molecular Research, Ribeirão Preto, v. 9, n. 2, p. 858-867, 2010.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
| |
| 180. | | SILVA, D. C. G. da; YAMANAKA, N.; BROGIN, R. L.; ARIAS, C. A. A.; NEPOMUCENO, A. L.; DI MAURO, A. O.; NOGUEIRA, L. M.; PASSIANOTTO, A. L. de L.; PEREIRA, S. dos S.; ABDELNOOR, R. V. Mapeamento do gene Rpp2 que confere resistência à ferrugem asiática da soja. In: CONGRESSO BRASILEIRO DE SOJA, 4., 2006, Londrina. Resumos... Londrina: Embrapa Soja, 2006. p. 45. Organizado por Odilon Ferreira Saraiva, Simone Ery Grosskopf.| Biblioteca(s): Embrapa Soja. |
| |
| Registros recuperados : 366 | |
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
