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Registro Completo |
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
19/06/2012 |
Data da última atualização: |
24/07/2012 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
BELARMINO, L. C.; OLIVEIRA, A. R. da S.; BRASILEIRO-VIDAL, A. C.; BORTOLETI, K. C. de A.; BEZERRA-NETO, J. P.; ABDELNOOR, R. V.; BENKO-ISEPPON, A. M. |
Afiliação: |
LUIS C. BELARMINO, UFPE; ANA R. DA S. OLIVEIRA, UFPE; ANA C. BRASILEIRO-VIDAL, UFPE; KYRIA C. DE A. BORTOLETI, UFPE / Univ. Federal do Vale do São Francisco; JOÃO PACÍFICO BEZERRA-NETO, UFPE; RICARDO VILELA ABDELNOOR, CNPSO; ANA M. BENKO-ISEPPON, UFPE. |
Título: |
Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: an example using soybean. |
Ano de publicação: |
2012 |
Fonte/Imprenta: |
Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 335-347, May 2012. |
Idioma: |
Inglês |
Conteúdo: |
Physical maps are important tools to uncover general chromosome structure as well as to compare different plant lineages and species, helping to elucidate genome structure, evolution and possibilities regarding synteny and colinearity. The increasing production of sequence data has opened an opportunity to link information from mapping studies to the underlying sequences. Genome browsers are invaluable platforms that provide access to these sequences, including tools for genome analysis, allowing the integration of multivariate information, and thus aiding to explain the emergence of complex genomes. The present work presents a tutorial regarding the use of genome browsers to develop targeted physical mapping, providing also a general overview and examples about the possibilities regarding the use of Fluorescent In Situ Hybridization (FISH) using bacterial artificial chromosomes (BAC), simple sequence repeats (SSR) and rDNA probes, highlighting the potential of such studies for map integration and comparative genetics. As a case study, the available genome of soybean was accessed to show how the physical and in silico distribution of such sequences may be compared at different levels. Such evaluations may also be complemented by the identification of sequences beyond the detection level of cytological methods, here using members of the aquaporin gene family as an example. The proposed approach highlights the complementation power of the combination of molecular cytogenetics and computational approaches for the anchoring of coding or repetitive sequences in plant genomes using available genome browsers, helping in the determination of sequence location, arrangement and number of repeats, and also filling gaps found in computational pseudochromosome assemblies. MenosPhysical maps are important tools to uncover general chromosome structure as well as to compare different plant lineages and species, helping to elucidate genome structure, evolution and possibilities regarding synteny and colinearity. The increasing production of sequence data has opened an opportunity to link information from mapping studies to the underlying sequences. Genome browsers are invaluable platforms that provide access to these sequences, including tools for genome analysis, allowing the integration of multivariate information, and thus aiding to explain the emergence of complex genomes. The present work presents a tutorial regarding the use of genome browsers to develop targeted physical mapping, providing also a general overview and examples about the possibilities regarding the use of Fluorescent In Situ Hybridization (FISH) using bacterial artificial chromosomes (BAC), simple sequence repeats (SSR) and rDNA probes, highlighting the potential of such studies for map integration and comparative genetics. As a case study, the available genome of soybean was accessed to show how the physical and in silico distribution of such sequences may be compared at different levels. Such evaluations may also be complemented by the identification of sequences beyond the detection level of cytological methods, here using members of the aquaporin gene family as an example. The proposed approach highlights the complementation power of the combination of molecular cytogenetics ... Mostrar Tudo |
Palavras-Chave: |
Bioinformática; FISH, BAC, SSR. |
Thesagro: |
Gene; Genoma; Soja. |
Thesaurus Nal: |
Aquaporins; Bioinformatics; Genes; Genome; Soybeans. |
Categoria do assunto: |
S Ciências Biológicas |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/61121/1/gmb.mining.v35n1s.335-347.2012.pdf
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Marc: |
LEADER 02722naa a2200313 a 4500 001 1926648 005 2012-07-24 008 2012 bl uuuu u00u1 u #d 100 1 $aBELARMINO, L. C. 245 $aMining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping$ban example using soybean. 260 $c2012 520 $aPhysical maps are important tools to uncover general chromosome structure as well as to compare different plant lineages and species, helping to elucidate genome structure, evolution and possibilities regarding synteny and colinearity. The increasing production of sequence data has opened an opportunity to link information from mapping studies to the underlying sequences. Genome browsers are invaluable platforms that provide access to these sequences, including tools for genome analysis, allowing the integration of multivariate information, and thus aiding to explain the emergence of complex genomes. The present work presents a tutorial regarding the use of genome browsers to develop targeted physical mapping, providing also a general overview and examples about the possibilities regarding the use of Fluorescent In Situ Hybridization (FISH) using bacterial artificial chromosomes (BAC), simple sequence repeats (SSR) and rDNA probes, highlighting the potential of such studies for map integration and comparative genetics. As a case study, the available genome of soybean was accessed to show how the physical and in silico distribution of such sequences may be compared at different levels. Such evaluations may also be complemented by the identification of sequences beyond the detection level of cytological methods, here using members of the aquaporin gene family as an example. The proposed approach highlights the complementation power of the combination of molecular cytogenetics and computational approaches for the anchoring of coding or repetitive sequences in plant genomes using available genome browsers, helping in the determination of sequence location, arrangement and number of repeats, and also filling gaps found in computational pseudochromosome assemblies. 650 $aAquaporins 650 $aBioinformatics 650 $aGenes 650 $aGenome 650 $aSoybeans 650 $aGene 650 $aGenoma 650 $aSoja 653 $aBioinformática 653 $aFISH, BAC, SSR 700 1 $aOLIVEIRA, A. R. da S. 700 1 $aBRASILEIRO-VIDAL, A. C. 700 1 $aBORTOLETI, K. C. de A. 700 1 $aBEZERRA-NETO, J. P. 700 1 $aABDELNOOR, R. V. 700 1 $aBENKO-ISEPPON, A. M. 773 $tGenetics and Molecular Biology, Ribeirão Preto$gv. 35, n. 1, suppl., p. 335-347, May 2012.
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Registro original: |
Embrapa Soja (CNPSO) |
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Registros recuperados : 363 | |
141. | | SANTOS, J. V. M. dos; YAMANAKA, N.; MARCELINO-GUIMARÃES, F. C.; TOLEDO, J. F. F. de; ARIAS, C. A. A.; ABDELNOOR, R. V. Molecular mapping of quantitative trait loci for agronomical traits in soybean under Asian soybean rust infection. Crop Breeding and Applied Biotechnology, v. 18, n. 4, p. 390-398, 2018.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Soja. |
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142. | | ABDELNOOR, R. V.; DIAS, W. P.; SILVA, J. F. V.; KIIHL, R. A. S.; CARVALHO, V. P.; MARIM, S. S. R. Marcadores moleculares RAPD na caracterizacao de isolados de nematoide de cisto da soja que quebram a resistencia do cultivar Hartwig. Genetics and Molecular Biology, Ribeirao Preto, v.21, n.3, p.232, Sept. 1998. Supplement.Biblioteca(s): Embrapa Soja. |
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143. | | CAMOLESE, A. C.; SILVA, D. C. G. D.; NOVAES, R. M. L.; GUIMARÃES, F. C. M.; ABDELNOOR, R. V.; ARIAS, C. A. A. Marcadores SNP associados à resistência à ferrugem asiática da soja com potencial para uso na seleção assistida. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 46.; REUNIÃO BRASILEIRA DE CONTROLE BIOLÓGICO, 11., 2013, Ouro Preto. [Anais...]. [Brasília]: Sociedade Brasileira de Fitopatologia, 2013. 1 CD-ROM.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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144. | | ROLLA, A. A. P.; BENEVENTI, M. A.; FUGANTI, R.; MARIN, S. R. R.; FARIAS, J. R. B.; ABDELNOOR, R. V.; NEPOMUCENO, A. L.; MARCELINO, F. C. Method validation for quantification of transgene copy number in soybean genome using qPCR relative quantification by 2 -^^ Ct or 2 ^ Ct formule. In: WORLD SOYBEAN RESEARCH CONFERENCE, 8., 2009, Beijing. Developing a global soy blueprint for a safe secure and sustainable supply: abstracts. Beijing: Chinese Academy of Agricultural Sciences: Institute of Crop Science, 2009. p. 233, ref. P581. WSRC 2009. Editado por Lijuan Qiu, Rongxia Guan, Jian Jin, Qijan Song, Shuntang Guo, Wenbin Li, Yuanchao Wang, Tianfu Han, Xiaobing Liu, Deyue Yu, Lianzhou Jiang, Deliang Peng.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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145. | | BRUMER, B. B.; MAIA, M. S.; DALCIN, M. B.; KUWAHARA, M. K.; NOVAES, R. M. L.; SILVA, D. C. G.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V. Otimização de um método de extração de DNA eficiente, rápido e de baixo custo de sementes de soja para fins de seleção assistida por marcadores moleculares. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 8., 2013, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2013. p. 46-50.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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146. | | KIDO, E. A.; PANDOLFI, V.; HOULLOU-KIDO, L. M.; ANDRADE, F. C.; MARCELINO, F. C.; NEPOMUCENO, A. L.; ABDELNOOR, R. V.; BURNQUIST, W. L.; BENKO-ISEPPON, A. M. Plant antimicrobial peptides: an overview of superSAGE transcriptional profile and a functional review. Current Protein & Peptide Science, v. 11, n. 3, p. 220-230, May 2010.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Soja. |
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147. | | MORALES, A.; PEREIRA, A. A.; CATELLI, L.; BORÉM, A.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. C. N. de; MICHELLE A. GRAHAM; HOFFMANN-CAMPO, C. B.; ABDELNOOR, R. V. Phenolic compounds accumulation in soybean plants in response to Phakopsora pachyrhizi. In: MOLECULAR & CELLULAR BIOLOGY OF TE SOYBEAN, 14., Des Moines, 2012. [Proceedings...]. Des Moines: Iowa State University, 2012. p. 136.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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148. | | ROMERO, C. C. T.; STOLF-MOREIRA, R.; BRITO JUNIOR, S. L.; NASCIMENTO, L. C.; CARAZZOLLE, M. F.; MARCELINO, F. C.; ABDELNOOR, R. V. Phenotypic and molecular analysis of an incompatible interaction between soybean and the fungus Uromyces appendiculatus. In: BRAZILIAN SYMPOSIUM ON PLANT MOLECULAR BIOLOGY, 3., 2011, Ilhéus. [Abstracts...]. [Ribeirão Preto]: SBG, 2011. 1 p. 1 CD-ROM.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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149. | | ABDELNOOR, R. V.; KIIHL, R. A. S.; DIAS, W. P.; SILVA, J. F. V.; CARVALHO, W. de P.; MARIN, S. R. R.; SCHUSTER, I. Uso de marcadores moleculares como auxílio aos programas de melhoramento visando resistência ao nematóide de cisto da soja (04.0.94.321-49). In: EMBRAPA. Centro Nacional de Pesquisa de Soja (Londrina, PR). Resultados de pesquisa da Embrapa Soja 1997. Londrina, 1998. p. 47-50. (Embrapa-CNPSo. Documentos, 118).Biblioteca(s): Embrapa Soja. |
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150. | | ABDELNOOR, R. V.; VASCONCELOS, M. J. V.; ALMEIDA, A. M. R.; SILVA, J. F. V.; BARROS, E. G. de; MOREIRA, M. A. Uso da técnica de RAPD para avaliar a diversidade genética entre isolados do nematóide do cisto da soja. Revista Brasileira de Genética, Ribeirão Preto, v. 18. n. 3, p. 161, set. 1995. Suplemento. Edição dos resumos do 41º Congresso Nacional de Genética, Caxambu, MG, 1995.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Milho e Sorgo; Embrapa Soja. |
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151. | | COTTA, M. G.; VERAS, H. C. T.; BARROS, L. M. G.; SILVA, F. R. da; ABDELNOOR, R. V.; ALMEIDA, J. D. de. Seleção de genes órgão/tecido específicos a partir do banco público de EST de soja. In: ENCONTRO DO TALENTO ESTUDANTIL DA EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA, 14., 2009, Brasília, DF. Anais: resumos dos trabalhos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2009. Resumo 031. p. 67Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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152. | | PASSIANOTTO, A. L. de L.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. F.; ARIAS, C. A. A.; BELZILE, F.; ABDELNOOR, R. V. Seleção genômica ampla para o melhoramento de soja [Glycine max (L.) Merrill]. In: REUNIÃO DE PESQUISA DE SOJA, 34., 2014, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2014. p. 93-95.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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153. | | SOUZA, L. G. de; SILVA, D. C. G. da; SILVEIRA, C. A. da; MARIN, S. R.; SANTOS, J. V. M. dos; YAMANAKA, N.; ABDELNOOR, R. V. Saturação de regiões genômicas da soja associadas a genes de resistência à ferrugem asiática. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 3., 2008, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2008. p. 22-25 (Embrapa Soja. Documentos, 297).Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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154. | | MORALES, A. M. A. P.; PEREIRA, A. A.; LINCOLN, L.; FREEMAN, B. C.; BOREM, A.; ABDELNOOR, R. V.; GRAHAM, M. A. Transcriptome Analysis of Rpp4 Silenced Plants via virus-induced gene silencing (VIGS). In: BRAZILIAN SYMPOSIUM ON PLANT MOLECULAR BIOLOGY, 3., 2011, Ilhéus. [Abstracts...]. [Ribeirão Preto]: SBG, 2011. 1 p. 1 CD-ROM.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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155. | | YAMANAKA, N.; LEMOS, N. G.; AKAMATSU, H.; YAMAOKA, Y.; SILVA, D. C. G.; PASSIANOTTO, A. L. de L.; ABDELNOOR, R. V.; SOARES, R. M.; SUENAGA, K. Soybean breeding materials useful for resistance to soybean rust in Brazil. Japan Agricultural Research Quarterly, Tsukuba, v. 45, n. 4, p. 385-395, 2011.Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
Biblioteca(s): Embrapa Soja. |
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156. | | TORKAMANEH, D.; LAROCHE, J.; VALLIYODAN, B.; O"DONOUGHUE, L.; COBER, E.; RAJCAN, I.; ABDELNOOR, R. V.; SREEDASYAM, A.; SCHMUTZ, J.; NGUYEN, H. T.; BELZILE, F. Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. Plant Biotechnology Journal, v. 19, p. 324-334, 2021. 11 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Soja. |
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157. | | FRONZA, V.; ABDELNOOR, R. V.; ARIAS, C. A. A.; PACHECO, L. G. A.; ARANTES, N. E.; ZITO, R. K.; SÁ, M. E. L. Use of molecular markers to identify soybean varieties: the experience of a public soybean breeding program. In: WORKING GROUP ON BIOCHEMICAL AND MOLECULAR TECHNIQUES, AND DNA-PROFILING IN PARTICULAR, 13., 2011, Brasília, DF. Geneva: UPOV, 2011. 2 p. BMT 13/25. Disponível em: .Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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158. | | BINNECK, E.; NASCIMENTO, L. S.; ABDELNOOR, R. V.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; HUNGRIA, M. Using soybean gene express for gene expression profiling in soybean. In: WORLD SOYBEAN RESEARCH CONFERENCE, 9., 2013, Durban. [Proceedings...]. Durban: OPDT: OPOT, 2013. Abst. 249. 1 CD-ROM. WSRC.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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159. | | SANTOS, J. V. M. dos; FERREIRA, E. G. C.; PASSIANOTTO, A. L. L.; BRUMER, B. B.; SANTOS, A. B. dos; SOARES, R. M.; TORKAMANEH, D.; ARIAS, C. A. A.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development. BMC Genomics, v. 20, n. 798, 2019. 13 p.Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Soja. |
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160. | | YAMANAKA, N.; SILVA, D. C. G. da; GILLI, J. R.; FUENTES, F. H.; YANG, Z.; POLIZEL, A.; SATO, H.; WATANABE, S.; BAN, T.; HOMMA, Y.; HARADA, K.; BROGIN, R. L.; NEPOMUCENO, A. L.; ABDELNOOR, R. V. Application of DNA markers for identifying genes for resistance to soybean diseases in South America and for evaluating genetic relationships among soybean gene pools. In: SUENAGA, K.; KUDO, H.; OSHIO, S. (Ed.). Comprehensive studies on the development of sustainable soybean production technology in South America. Tsukuba: JIRCAS, 2007. p. 47-53. (JIRCAS Working Report, 51).Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
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Registros recuperados : 363 | |
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