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 | Acesso ao texto completo restrito à biblioteca da Embrapa Recursos Genéticos e Biotecnologia. Para informações adicionais entre em contato com cenargen.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Caprinos e Ovinos; Embrapa Meio-Norte; Embrapa Pantanal; Embrapa Pecuária Sul; Embrapa Recursos Genéticos e Biotecnologia; Embrapa Tabuleiros Costeiros. |
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Data corrente: |
21/09/2020 |
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Data da última atualização: |
17/11/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
McMANUS, C.; PAIVA, S. R.; CAETANO, A. R.; HERMUCHE, P.; GUIMARÃES, R. F.; CARVALHO JUNIOR, O. A.; BRAGA, R.; CARNEIRO, P. L. S.; MORAES, J. C. F.; SOUZA, C. J. H. de; FACO, O.; SANTOS, S. A.; AZEVEDO, H. C.; ARAUJO, A. M. de; FAÇANHA, D. A. E.; IANELLA, P. |
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Afiliação: |
CONCEPTA McMANUS, Universidade de Brasília (UnB) - Brasília, DF, Brazil; SAMUEL REZENDE PAIVA, Cenargen; ALEXANDRE RODRIGUES CAETANO, Cenargen; POTIRA HERMUCHE, Universidade de Brasília (UnB) - Brasília, DF, Brazil; RENATO FONTES GUIMARÃES, Universidade de Brasília (UnB) - Brasília, DF, Brazil; OSMAR ABILIO CARVALHO JUNIOR, Universidade de Brasília (UnB) - Brasília, DF, Brazil; RAMAYANA BRAGA; PAULO LUIZ SOUZA CARNEIRO, Universidade Estadual Do Sudoeste da Bahia (UESB) - Vitória da Conquista - BA, Brazil; JOSE CARLOS FERRUGEM MORAES, CPPSUL; CARLOS JOSE HOFF DE SOUZA; OLIVARDO FACO, CNPC; SANDRA APARECIDA SANTOS; HYMERSON COSTA AZEVEDO, CPATC; ADRIANA MELLO DE ARAUJO, CPAMN; DEBORA ANDRÉA E. FAÇANHA, Federal Rural University of the Semi-arid Region (UFERSA) - Mossoró, RN, Brazil; PATRICIA IANELLA, Cenargen. |
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Título: |
Landscape genetics of sheep in Brazil using SNP markers. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Small Ruminant Research, v. 192, e106239, 2020. |
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DOI: |
https://doi.org/10.1016/j.smallrumres.2020.106239 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: The aim of this study was to explore spatial patterns of genetic structure in sheep breeds sampled in Brazil using Single Nucleotide Polymorphisms (SNPs) in order to evaluate whether or not the genetic and geographic dis-tances are interrelated in this species. Samples genotyped using the 50KSheepSNPChip (Illumina) included 215 animals from eight different sheep breeds. All collection sites were georeferenced and data analyzed to determine geographic patterns from genetic data. To evaluate the correlation between genetic and geographic distances Mantel tests, Allelic Aggregation Index Analyses (AAIA), and spatial autocorrelation were performed. Genetic Landscape Shape procedure and Monmonier?s Algorithm were used to generate graphical visualization of the genetic distances across the landscape. The observed correlation observed between genetic and geographical distances was 0.552 (P <0.00099). Observed AAIA results (Rave =0.16, P <0.001) indicated a non-random distribution of genotypes across the landscape. High genetic differentiation was observed in the Southern re-gions of Brazil, separating wool and hair sheep. Low genetic distances were observed between flocks and breeds from north and center-west regions, and may be the result of unrecorded introgressions resulting from past unknown crossbreeding events. Observed Spatial Autocorrelation Analyses results indicate a minimum distance of 400 km should be used between collection sites to maximize genetic variability in future germplasm samplings for conservation of genetic resources. MenosAbstract: The aim of this study was to explore spatial patterns of genetic structure in sheep breeds sampled in Brazil using Single Nucleotide Polymorphisms (SNPs) in order to evaluate whether or not the genetic and geographic dis-tances are interrelated in this species. Samples genotyped using the 50KSheepSNPChip (Illumina) included 215 animals from eight different sheep breeds. All collection sites were georeferenced and data analyzed to determine geographic patterns from genetic data. To evaluate the correlation between genetic and geographic distances Mantel tests, Allelic Aggregation Index Analyses (AAIA), and spatial autocorrelation were performed. Genetic Landscape Shape procedure and Monmonier?s Algorithm were used to generate graphical visualization of the genetic distances across the landscape. The observed correlation observed between genetic and geographical distances was 0.552 (P <0.00099). Observed AAIA results (Rave =0.16, P <0.001) indicated a non-random distribution of genotypes across the landscape. High genetic differentiation was observed in the Southern re-gions of Brazil, separating wool and hair sheep. Low genetic distances were observed between flocks and breeds from north and center-west regions, and may be the result of unrecorded introgressions resulting from past unknown crossbreeding events. Observed Spatial Autocorrelation Analyses results indicate a minimum distance of 400 km should be used between collection sites to maximize genetic variabili... Mostrar Tudo |
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Palavras-Chave: |
Delaunay triangulation; Genetic landscape shape; Mantel. |
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Thesagro: |
Ovelha; Polimorfismo Genético. |
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Thesaurus Nal: |
Brazil; Genetic polymorphism; Germplasm conservation; Sampling; Sheep; Sheep breeds; Single nucleotide polymorphism. |
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Categoria do assunto: |
G Melhoramento Genético |
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Marc: |
LEADER 02852naa a2200457 a 4500
001 2126661
005 2020-11-17
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1016/j.smallrumres.2020.106239$2DOI
100 1 $aMcMANUS, C.
245 $aLandscape genetics of sheep in Brazil using SNP markers.$h[electronic resource]
260 $c2020
520 $aAbstract: The aim of this study was to explore spatial patterns of genetic structure in sheep breeds sampled in Brazil using Single Nucleotide Polymorphisms (SNPs) in order to evaluate whether or not the genetic and geographic dis-tances are interrelated in this species. Samples genotyped using the 50KSheepSNPChip (Illumina) included 215 animals from eight different sheep breeds. All collection sites were georeferenced and data analyzed to determine geographic patterns from genetic data. To evaluate the correlation between genetic and geographic distances Mantel tests, Allelic Aggregation Index Analyses (AAIA), and spatial autocorrelation were performed. Genetic Landscape Shape procedure and Monmonier?s Algorithm were used to generate graphical visualization of the genetic distances across the landscape. The observed correlation observed between genetic and geographical distances was 0.552 (P <0.00099). Observed AAIA results (Rave =0.16, P <0.001) indicated a non-random distribution of genotypes across the landscape. High genetic differentiation was observed in the Southern re-gions of Brazil, separating wool and hair sheep. Low genetic distances were observed between flocks and breeds from north and center-west regions, and may be the result of unrecorded introgressions resulting from past unknown crossbreeding events. Observed Spatial Autocorrelation Analyses results indicate a minimum distance of 400 km should be used between collection sites to maximize genetic variability in future germplasm samplings for conservation of genetic resources.
650 $aBrazil
650 $aGenetic polymorphism
650 $aGermplasm conservation
650 $aSampling
650 $aSheep
650 $aSheep breeds
650 $aSingle nucleotide polymorphism
650 $aOvelha
650 $aPolimorfismo Genético
653 $aDelaunay triangulation
653 $aGenetic landscape shape
653 $aMantel
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
700 1 $aHERMUCHE, P.
700 1 $aGUIMARÃES, R. F.
700 1 $aCARVALHO JUNIOR, O. A.
700 1 $aBRAGA, R.
700 1 $aCARNEIRO, P. L. S.
700 1 $aMORAES, J. C. F.
700 1 $aSOUZA, C. J. H. de
700 1 $aFACO, O.
700 1 $aSANTOS, S. A.
700 1 $aAZEVEDO, H. C.
700 1 $aARAUJO, A. M. de
700 1 $aFAÇANHA, D. A. E.
700 1 $aIANELLA, P.
773 $tSmall Ruminant Research$gv. 192, e106239, 2020.
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Registro original: |
Embrapa Pecuária Sul (CPPSUL) |
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Biblioteca |
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| Registros recuperados : 10 | |
| 6. |  | MEYER, G. E.; CAMARGO NETO, J.; JONES, D. D.; HINDMAN, T. W. Intensified fuzzy clusters for classifying plant, soil, and residue regions of interest from color images. Computers and Electronics in Agriculture, New York, v. 42, p. 161-180, 2004.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 7. | | PALMER, S. A.; CLAPHAM, A. J.; ROSE, P.; FREITAS, F. O.; OWEN, B. D.; BERESFORD-JONES, D.; MOORE, J. D.; KITCHEN, J. L.; ALLABY, R. G. Archaeogenomic evidence of punctuated genome evolution in Gossypium. Molecular Biology and Evolution, v. 29, n. 8, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | BROWN, N.; KUMAR, P.; KHAMAL, S.; SINGH, R.; SUASSUNA, N. D.; MCBLANCHETT, J.; LUBBERS, E.; JONES, D.; PATERSON, A.; CHEE, P. W. Registration of eight upland cotton (Gossypium hirsutum L.) germplasm lines with qFL-Chr.25, a fiber-length QTL introgressed from Gossypium barbadense. Journal of Plant Registrations, p. 1-7, 2020. 7 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Algodão. |
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| 9. | | SILVA, A. M. M.; JONES, D. L.; CHADWICK, D. R.; QI, X.; COTTA, S. R.; ARAÚJO, V. L. V. P.; MATTEOLI, F. P.; LACERDA-JÚNIOR, G. V.; PEREIRA, A. P. A.; FERNANDES JUNIOR, P. I.; CARDOSO, E. J. B. N. Can arbuscular mycorrhizal fungi and rhizobacteria facilitate P33 uptake in maize plants under water stress? Microbiological Research, v. 271, 127350, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Semiárido. |
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| 10. | | PATERSON, A. H.; WENDEL, J. F.; GUNDLACH, H.; GUO, H.; JENKINS, J.; JIN, D.; LLEWELLYN, D.; SHOWMAKER, K. C.; SHU, S.; UDALL, J.; YOO, M. J; BYERS, R.; CHEN, W.; DORON-FAIGENBOIM, A.; DUKE, M. V.; GONG, L.; GRIMWOOD, J.; GROVER, C.; GRUPP, K.; HU, G.; LEE, T.-H.; LI, J.; LIN, L.; LIU, T.; MARLER, B. S.; PAGE, J. T.; ROBERTS, A. W.; ROMANEL, E.; SANDERS, W. S.; SZADKOWSKI, E.; TAN, X.; TANG, H.; XU, C.; WANG, J.; WANG, Z.; ZHANG, D.; ZHANG, L.; ASHRAFI, H.; BEDON, F.; BOWERS, J. E.; BRUBAKER, C. L.; CHEE, P. W.; DAS, S.; GINGLE, A. R.; HAIGLER, C. H.; HARKER, D.; HOFFMANN, L. V.; HOVAV, R.; JONES, D. C.; LEMKI, C.; MANSOOR, S.; RAHMAN, M. U.; RAINVILLE, L. N.; RAMBANI, A.; REDDY, U. K.; RONG, J.-K.; SARANGA, Y.; SCHEFFLER, B. E.; STELLY, D. M.; TRIPLETT, B. A.; WAGHMARE, V. N.; WALFORD, S. A.; WRIGHT, R. J.; ZAKI, E. A.; ZHANG, T.; DENNIS, E. S.; MAYER, K. F. X.; PETERSON, D. G.; ROKHSAR, D. S.; WANG, X.; SCHMUTZ, J. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. NATURE, v. 492, p. 423-427, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Algodão. |
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| Registros recuperados : 10 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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