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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com rosangela.lacerda@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
10/02/2017 |
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Data da última atualização: |
30/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
FONSECA, P. A. de S.; SANTOS, F. C. dos; ROSSE, I. C.; VENTURA, R. V.; BRUNELI, F. A. T.; PENNA, V. M.; VERNEQUE, R. da S.; MACHADO, M. A.; SILVA, M. V. G. B.; CARVALHO, M. R. S.; PEIXOTO, M. G. C. D. |
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Afiliação: |
Pablo Augusto de Souza Fonseca, UFMG; Fernanda Caroline dos Santos, UFMG; Izinara Cruz Rosse, UFMG; Ricardo Vieira Ventura, University of Guelph, Guelph, ON, Canada; FRANK ANGELO TOMITA BRUNELI, CNPGL; Vânia Maldini Penna, UFMG; RUI DA SILVA VERNEQUE, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; Maria Raquel Santos Carvalho, UFMG; MARIA GABRIELA CAMPOLINA D PEIXOTO, CNPGL. |
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Título: |
Retelling the recent evolution of genetic diversity for Guzerá: Inferences from LD decay, runs of homozygosity and Ne over the generations. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
Livestock Science, v. 193, p. 110-117, 2016. |
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Idioma: |
Inglês |
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Conteúdo: |
Genetic diversity is the one of the most important issues in conservation studies of livestock breeds or endangered species. In the present study, we tested the feasibility of describing the recent evolution in genetic diversity through genome-wide SNP genotyping and estimates of linkage disequilibrium decay patterns, effective population size, inbreeding coefficient based on runs of homozygosity and population structure. We choose the bovine indicine breed Guzerá because it has suffered recent bottlenecks which have been registered historically. A sample of 1036 females was genotyped using Illumina BovineSNP50. A resampling strategy was applied to correct for sampling biases caused by the population structure in herds, and by the extensive use of some sires for artificial reproduction. A subsample of 210 animals and 32,806 markers with MAF > 0.01 was used. Very low linkage disequilibrium was detected for distances greater than 120 Kb between two markers. Furthermore, three points of decrease in effective population size between generations were detected, which coincide with the historically registered bottlenecks. The inbreeding coefficient, based on runs of homozygosity, confirmed a strong contribution of the last 20?30 generations to current inbreeding. In the population structure analysis, the most probable number of sub-populations is 2, reflecting selection purpose (beef or dual-purpose). Taken together, these results allow a retelling of the recent evolution of this breed. The strategy described here will be useful for other breeds or even species for which a careful historical registry is not available for conservation proposals. MenosGenetic diversity is the one of the most important issues in conservation studies of livestock breeds or endangered species. In the present study, we tested the feasibility of describing the recent evolution in genetic diversity through genome-wide SNP genotyping and estimates of linkage disequilibrium decay patterns, effective population size, inbreeding coefficient based on runs of homozygosity and population structure. We choose the bovine indicine breed Guzerá because it has suffered recent bottlenecks which have been registered historically. A sample of 1036 females was genotyped using Illumina BovineSNP50. A resampling strategy was applied to correct for sampling biases caused by the population structure in herds, and by the extensive use of some sires for artificial reproduction. A subsample of 210 animals and 32,806 markers with MAF > 0.01 was used. Very low linkage disequilibrium was detected for distances greater than 120 Kb between two markers. Furthermore, three points of decrease in effective population size between generations were detected, which coincide with the historically registered bottlenecks. The inbreeding coefficient, based on runs of homozygosity, confirmed a strong contribution of the last 20?30 generations to current inbreeding. In the population structure analysis, the most probable number of sub-populations is 2, reflecting selection purpose (beef or dual-purpose). Taken together, these results allow a retelling of the recent evolution of this b... Mostrar Tudo |
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Palavras-Chave: |
Bovine; Genetic diversity; Genetic structure; Genome-wide genotyping; Guzerá. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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Marc: |
LEADER 02590naa a2200301 a 4500
001 2063547
005 2023-01-30
008 2016 bl uuuu u00u1 u #d
100 1 $aFONSECA, P. A. de S.
245 $aRetelling the recent evolution of genetic diversity for Guzerá$bInferences from LD decay, runs of homozygosity and Ne over the generations.$h[electronic resource]
260 $c2016
520 $aGenetic diversity is the one of the most important issues in conservation studies of livestock breeds or endangered species. In the present study, we tested the feasibility of describing the recent evolution in genetic diversity through genome-wide SNP genotyping and estimates of linkage disequilibrium decay patterns, effective population size, inbreeding coefficient based on runs of homozygosity and population structure. We choose the bovine indicine breed Guzerá because it has suffered recent bottlenecks which have been registered historically. A sample of 1036 females was genotyped using Illumina BovineSNP50. A resampling strategy was applied to correct for sampling biases caused by the population structure in herds, and by the extensive use of some sires for artificial reproduction. A subsample of 210 animals and 32,806 markers with MAF > 0.01 was used. Very low linkage disequilibrium was detected for distances greater than 120 Kb between two markers. Furthermore, three points of decrease in effective population size between generations were detected, which coincide with the historically registered bottlenecks. The inbreeding coefficient, based on runs of homozygosity, confirmed a strong contribution of the last 20?30 generations to current inbreeding. In the population structure analysis, the most probable number of sub-populations is 2, reflecting selection purpose (beef or dual-purpose). Taken together, these results allow a retelling of the recent evolution of this breed. The strategy described here will be useful for other breeds or even species for which a careful historical registry is not available for conservation proposals.
653 $aBovine
653 $aGenetic diversity
653 $aGenetic structure
653 $aGenome-wide genotyping
653 $aGuzerá
700 1 $aSANTOS, F. C. dos
700 1 $aROSSE, I. C.
700 1 $aVENTURA, R. V.
700 1 $aBRUNELI, F. A. T.
700 1 $aPENNA, V. M.
700 1 $aVERNEQUE, R. da S.
700 1 $aMACHADO, M. A.
700 1 $aSILVA, M. V. G. B.
700 1 $aCARVALHO, M. R. S.
700 1 $aPEIXOTO, M. G. C. D.
773 $tLivestock Science$gv. 193, p. 110-117, 2016.
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Embrapa Gado de Leite (CNPGL) |
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| Registros recuperados : 6 | |
| 1. |  | SANTANA, D. M.; COSTA, J. A. A. da; LEAL, L. A. D.; AGUIAR, D. M. de. Capim brs piatã: aplicação de novas tecnologias para o desenvolvimento rural. In: JORNADA CIENTÍFICA DA EMBRAPA GADO DE CORTE, 6., 2010, Campo Grande, MS. Ética na pesquisa científica: [Anais da ...]. Campo Grande, MS: Embrapa Gado de Corte, 2010. 1 CD-ROM. Coordenadora: Vanessa Felipe de Souza 1 p.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 4. | | CURSINO, A. E.; LIMA, M. T.; NOGUEIRA, M. F.; AGUIAR, D. M. de; LUIZ, A. P. M. F.; ALVES, P. A.; ARAUJO JUNIOR, J. P.; KROON, E. G. Identification of large genetic variations in the equine infectious anemia virus tat-gag genomic region. Transboundary and Emerging Diseases, v. 68, n. 6, p. 3424-3432, 2021.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Pantanal. |
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| 5. | | CURSINO, A. E.; VILELA, A. P. P.; FRANCO-LUIZ, A. P. M.; OLIVEIRA, J. G. de; NOGUEIRA, M. F.; ARAÚJO JÚNIOR, J. P.; AGUIAR, D. M. de; KROON, E. G. Equine infectious anemia virus in naturally infected horses from the Brazilian Pantanal. Archives of Virology, v. 163, p. 2385-2394, 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Pantanal. |
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| 6. | | MALOSSI, C. D.; FIORATTI, E. G.; CARDOSO, J. F.; MAGRO, A. J.; KROON, E. G.; AGUIAR, D. M. de; BORGES, A. M. C. M; NOGUEIRA, M. F.; ULLMANN, L. S.; ARAUJO JUNIOR, J. P. High genomic variability in Equine Infectious Anemia Virus obtained from naturally infected horses in Pantanal, Brazil: an endemic region case. Viruses, v. 12, n. 2, 207, p. 1-15, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pantanal. |
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| Registros recuperados : 6 | |
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