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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
17/07/2023 |
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Data da última atualização: |
22/08/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ROCHA, R. de F. B.; GARCIA, A. O.; OTTO, P. I.; SANTOS, M. G. dos; SILVA, M. V. G. B.; MARTINS, M. F.; MACHADO, M. A.; PANETTO, J. C. do C.; GUIMARÃES, S. E. F. |
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Afiliação: |
RENATA DE FÁTIMA BRETANHA ROCHA, Universidade Federal de Viçosa; ARIELLY OLIVEIRA GARCIA, Universidade Federal de Viçosa; PAMELA ITAJARA OTTO, Universidade Federal de Santa Maria; MATEUS GUIMARÃES DOS SANTOS, Universidade Federal de Viçosa; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCO ANTONIO MACHADO, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; SIMONE ELIZA FACIONI GUIMARÃES, Universidade Federal de Viçosa. |
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Título: |
Single-step genome-wide association studies and post-GWAS analyses for the number of oocytes and embryos in Gir cattle. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Mammalian Genome, v. 34, p. 497-508, 2023. |
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DOI: |
https://doi.org/10.1007/s00335-023-10009-0 |
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Idioma: |
Inglês |
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Conteúdo: |
Genome-Wide Association Studies (GWAS) are used for identifcation of quantitate trait loci (QTL) and genes associated with several traits. We aimed to identify genomic regions, genes, and biological processes associated with number of total and viable oocytes, and number of embryos in Gir dairy cattle. A dataset with 17,526 follicular aspirations, including the following traits: number of viable oocytes (VO), number of total oocytes (TO), and number of embryos (EMBR) from 1641 Gir donors was provided by fve diferent stock farms. A genotype fle with 2093 animals and 395,524 SNP markers was used to perform a single-step GWAS analysis for each trait. The top 10 windows with the highest percentage of additive genetic variance explained by 100 adjacent SNPs were selected. The genomic regions identifed in our work were overlapped with QTLs from QTL database on chromosomes 1, 2, 5, 6, 7, 8, 9, 13, 17, 18, 20, 21, 22, 24, and 29. These QTLs were classifed as External, Health, Meat and carcass, Production or Reproduction traits, and about 38% were related to Reproduction. In total, 117 genes were identifed, of which 111 were protein-coding genes. Exclusively associations were observed for 42 genes with EMBR, and 1 with TO. Also, 42 genes were in common between VO and TO, 28 between VO and EMBR, and four genes were in common among all traits. In conclusion, great part of the identifed genes plays a functional role in initial embryo development or general cell functions. The protein-coding genes ARNT, EGR1, HIF1A, AHR, and PAX2 are good markers for the production of oocytes and embryos in Gir cattle. MenosGenome-Wide Association Studies (GWAS) are used for identifcation of quantitate trait loci (QTL) and genes associated with several traits. We aimed to identify genomic regions, genes, and biological processes associated with number of total and viable oocytes, and number of embryos in Gir dairy cattle. A dataset with 17,526 follicular aspirations, including the following traits: number of viable oocytes (VO), number of total oocytes (TO), and number of embryos (EMBR) from 1641 Gir donors was provided by fve diferent stock farms. A genotype fle with 2093 animals and 395,524 SNP markers was used to perform a single-step GWAS analysis for each trait. The top 10 windows with the highest percentage of additive genetic variance explained by 100 adjacent SNPs were selected. The genomic regions identifed in our work were overlapped with QTLs from QTL database on chromosomes 1, 2, 5, 6, 7, 8, 9, 13, 17, 18, 20, 21, 22, 24, and 29. These QTLs were classifed as External, Health, Meat and carcass, Production or Reproduction traits, and about 38% were related to Reproduction. In total, 117 genes were identifed, of which 111 were protein-coding genes. Exclusively associations were observed for 42 genes with EMBR, and 1 with TO. Also, 42 genes were in common between VO and TO, 28 between VO and EMBR, and four genes were in common among all traits. In conclusion, great part of the identifed genes plays a functional role in initial embryo development or general cell functions. The protein-co... Mostrar Tudo |
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Palavras-Chave: |
Associação genômica. |
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Thesagro: |
Bovino; Embrião Animal; Gado Gir; Genética Animal. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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Marc: |
LEADER 02508naa a2200289 a 4500
001 2154972
005 2023-08-22
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s00335-023-10009-0$2DOI
100 1 $aROCHA, R. de F. B.
245 $aSingle-step genome-wide association studies and post-GWAS analyses for the number of oocytes and embryos in Gir cattle.$h[electronic resource]
260 $c2023
520 $aGenome-Wide Association Studies (GWAS) are used for identifcation of quantitate trait loci (QTL) and genes associated with several traits. We aimed to identify genomic regions, genes, and biological processes associated with number of total and viable oocytes, and number of embryos in Gir dairy cattle. A dataset with 17,526 follicular aspirations, including the following traits: number of viable oocytes (VO), number of total oocytes (TO), and number of embryos (EMBR) from 1641 Gir donors was provided by fve diferent stock farms. A genotype fle with 2093 animals and 395,524 SNP markers was used to perform a single-step GWAS analysis for each trait. The top 10 windows with the highest percentage of additive genetic variance explained by 100 adjacent SNPs were selected. The genomic regions identifed in our work were overlapped with QTLs from QTL database on chromosomes 1, 2, 5, 6, 7, 8, 9, 13, 17, 18, 20, 21, 22, 24, and 29. These QTLs were classifed as External, Health, Meat and carcass, Production or Reproduction traits, and about 38% were related to Reproduction. In total, 117 genes were identifed, of which 111 were protein-coding genes. Exclusively associations were observed for 42 genes with EMBR, and 1 with TO. Also, 42 genes were in common between VO and TO, 28 between VO and EMBR, and four genes were in common among all traits. In conclusion, great part of the identifed genes plays a functional role in initial embryo development or general cell functions. The protein-coding genes ARNT, EGR1, HIF1A, AHR, and PAX2 are good markers for the production of oocytes and embryos in Gir cattle.
650 $aBovino
650 $aEmbrião Animal
650 $aGado Gir
650 $aGenética Animal
653 $aAssociação genômica
700 1 $aGARCIA, A. O.
700 1 $aOTTO, P. I.
700 1 $aSANTOS, M. G. dos
700 1 $aSILVA, M. V. G. B.
700 1 $aMARTINS, M. F.
700 1 $aMACHADO, M. A.
700 1 $aPANETTO, J. C. do C.
700 1 $aGUIMARÃES, S. E. F.
773 $tMammalian Genome$gv. 34, p. 497-508, 2023.
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Registro original: |
Embrapa Gado de Leite (CNPGL) |
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| Acesso ao texto completo restrito à biblioteca da Embrapa Clima Temperado. Para informações adicionais entre em contato com cpact.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Clima Temperado. |
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Data corrente: |
11/03/2021 |
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Data da última atualização: |
11/03/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
GARCIA, N.; DA-SILVA, C. J.; COCCO, K. L. T.; POMAGUALLI, D.; OLIVEIRA, F. K. DE; SILVA, J. V. L. DA; OLIVEIRA, A. C. B. de; AMARANTE, L. DO. |
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Afiliação: |
NATÁLIA GARCIA, UFPEL; CRISTIANE JOVELINA DA-SILVA, UFPEL; KASSIA LUIZA TEIXEIRA COCCO, UFPEL; DARWIN POMAGUALLI, UFPEL; FABIANE KLETKE DE OLIVEIRA, UFPEL; JOÃO VICTOR LEMOS DA SILVA, UFPEL; ANA CLAUDIA BARNECHE DE OLIVEIRA, CPACT; LUCIANO DO AMARANTE, UFPEL. |
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Título: |
Waterlogging tolerance of five soybean genotypes through different physiological and biochemical mechanisms. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Environmental and Experimental Botany, v. 172, 103975, 2020. |
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Páginas: |
8 p. |
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ISSN: |
0098-8472 |
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Idioma: |
Inglês |
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Conteúdo: |
Waterlogging is a serious environmental threat that limits crop growth and yield in low-lying, rainfed areas many regions across the globe. Here we investigated the effects of waterlogging and subsequent re-oxygenation on the physiology and biochemistry of three soybean [Glycine max (L.) Merrill] genotypes (PELBR10-6000, PELBR11-6028, and PELBR11-6042) and two cultivars (TEC IRGA 6070 and BMX Potência). Plants were grown under greenhouse conditions until the V4 stage when they were subjected to waterlogging for seven days. The water was then drained and plants were allowed to recover for another seven days. Overall, all genotypes suppressed waterlogging stress with distinct mechanisms. Waterlogged PELBR10-6000 surpassed control plant levels of CO2 assimilation rate and readily responded to the energy lack induced by hypoxia by activating the fermentative enzymes and alanine aminotransferase. Similar mechanisms were observed in BMX Potência, which restored metabolism to control levels at the end of the recovery. PELBR11-6028 and PELBR11-6042 activated the antioxidant defenses, and TEC IRGA 6070 did not delay flowering. |
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Thesagro: |
Água; Glycine Max; Manejo de Água; Stress. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 01936naa a2200277 a 4500
001 2130627
005 2021-03-11
008 2020 bl uuuu u00u1 u #d
022 $a0098-8472
100 1 $aGARCIA, N.
245 $aWaterlogging tolerance of five soybean genotypes through different physiological and biochemical mechanisms.$h[electronic resource]
260 $c2020
300 $a8 p.
520 $aWaterlogging is a serious environmental threat that limits crop growth and yield in low-lying, rainfed areas many regions across the globe. Here we investigated the effects of waterlogging and subsequent re-oxygenation on the physiology and biochemistry of three soybean [Glycine max (L.) Merrill] genotypes (PELBR10-6000, PELBR11-6028, and PELBR11-6042) and two cultivars (TEC IRGA 6070 and BMX Potência). Plants were grown under greenhouse conditions until the V4 stage when they were subjected to waterlogging for seven days. The water was then drained and plants were allowed to recover for another seven days. Overall, all genotypes suppressed waterlogging stress with distinct mechanisms. Waterlogged PELBR10-6000 surpassed control plant levels of CO2 assimilation rate and readily responded to the energy lack induced by hypoxia by activating the fermentative enzymes and alanine aminotransferase. Similar mechanisms were observed in BMX Potência, which restored metabolism to control levels at the end of the recovery. PELBR11-6028 and PELBR11-6042 activated the antioxidant defenses, and TEC IRGA 6070 did not delay flowering.
650 $aÁgua
650 $aGlycine Max
650 $aManejo de Água
650 $aStress
700 1 $aDA-SILVA, C. J.
700 1 $aCOCCO, K. L. T.
700 1 $aPOMAGUALLI, D.
700 1 $aOLIVEIRA, F. K. DE
700 1 $aSILVA, J. V. L. DA
700 1 $aOLIVEIRA, A. C. B. de
700 1 $aAMARANTE, L. DO
773 $tEnvironmental and Experimental Botany$gv. 172, 103975, 2020.
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