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| Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
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Biblioteca(s): |
Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
Data corrente: |
17/12/2013 |
Data da última atualização: |
15/06/2023 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
McCLURE, M. C.; SONSTEGARD, T. S.; WIGGANS, G. R.; EENENNAAM, A. L. V.; WEBER, K. L.; PENEDO, C. T.; BERRY, D. P.; FLYNN, J.; GARCIA, J. F.; CARMO, A. S.; REGITANO, L. C. de A.; ALBUQUERQUE, M.; SILVA, M. V. G. B.; MACHADO, M. A.; COFFEY, M.; MOORE, K.; BOSCHER, M. Y.; GENESTOUT, L.; MAZZA, R.; TAYLOR, J. F.; SCHNABEL, R. D.; SIMPSON, B.; MARQUES, E.; McEWAN, J. C.; CROMIE, A.; COUTINHO, L. L.; KUEHN, L. A.; KEELE, J. W.; PIPER, E. K.; COOK, J.; WILLIAMS, R.; TASSELL, C. P. V. |
Afiliação: |
MATTHEW C. McCLURE, USDA; TAD S. SONSTEGARD, USDA; GEORGE R. WIGGANS, USDA; ALISON L. VAN EENENNAAM, University of California - Davis; KRISTINA L. WEBER, University of California-Davis; CECILIA T. PENEDO, University of California-Davis; DONAGH P. BERRY, Animal and Grassland Research and Innovation Centre, Ireland; JOHN FLYNN, Weatherbys DNA Laboratory, Ireland; JOSÉ F. GARCIA, UNESP; ADRIANA S. CARMO, Deoxi Biotecnologia, Araçatuba; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; MILLA ALBUQUERQUE, USP; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MIKE COFFEY, SRUC, Scotland; KIRSTY MOORE, SRUC, Scotland; MARIE-YVONNE BOSCHER, LABOGENA, France; LUCIE GENESTOUT, LABOGENA, France; RAFFAELE MAZZA, Italian Breeders Association, Roma; JEREMY F. TAYLOR, University of Missouri-Columbia; ROBERT D. SCHNABEL, University of Missouri-Columbia; BARRY SIMPSON, GeneSeek, Neogen Company, Lincoln, USA; ELISA MARQUES, GeneSeek, Neogen Company, Lincoln, USA; JOHN C. McEWAN, AgResearch, Invermay Agricultural Centre, New Zealand; ANDREW CROMIE, Irish Cattle Breeding Federation, Ireland; LUIZ L. COUTINHO, ESALQ/USP; LARRY A. KUEHN, USDA-ARS; JOHN W. KEELE, USDA-ARS; EMILY K. PIPER, University of Queensland, Australia; JIM COOK, University of New England, Australia; ROBERT WILLIAMS, American-International Charolais Association, USA; CURTIS P. VAN TASSELL, USDA. |
Título: |
Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds. |
Ano de publicação: |
2013 |
Fonte/Imprenta: |
Frontiers in Genetics, v. 4, n. 176, 2013. |
Páginas: |
11 p. |
Idioma: |
Inglês |
Conteúdo: |
To assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS genotypes, this figure was 96% for our reference animals, indicating potential errors in the reported MS genotypes. The workflow we suggest autocorrects for genotyping errors and rare haplotypes, by MS genotyping animals whose imputed MS alleles fail parentage verification, and then incorporating those animals into the reference dataset. MenosTo assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS ... Mostrar Tudo |
Palavras-Chave: |
Imputation; Microsatellite; Parentage verification; SNP; STR. |
Categoria do assunto: |
G Melhoramento Genético |
Marc: |
LEADER 03360naa a2200565 a 4500 001 2154448 005 2023-06-15 008 2013 bl uuuu u00u1 u #d 100 1 $aMcCLURE, M. C. 245 $aImputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.$h[electronic resource] 260 $c2013 300 $a11 p. 520 $aTo assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS genotypes, this figure was 96% for our reference animals, indicating potential errors in the reported MS genotypes. The workflow we suggest autocorrects for genotyping errors and rare haplotypes, by MS genotyping animals whose imputed MS alleles fail parentage verification, and then incorporating those animals into the reference dataset. 653 $aImputation 653 $aMicrosatellite 653 $aParentage verification 653 $aSNP 653 $aSTR 700 1 $aSONSTEGARD, T. S. 700 1 $aWIGGANS, G. R. 700 1 $aEENENNAAM, A. L. V. 700 1 $aWEBER, K. L. 700 1 $aPENEDO, C. T. 700 1 $aBERRY, D. P. 700 1 $aFLYNN, J. 700 1 $aGARCIA, J. F. 700 1 $aCARMO, A. S. 700 1 $aREGITANO, L. C. de A. 700 1 $aALBUQUERQUE, M. 700 1 $aSILVA, M. V. G. B. 700 1 $aMACHADO, M. A. 700 1 $aCOFFEY, M. 700 1 $aMOORE, K. 700 1 $aBOSCHER, M. Y. 700 1 $aGENESTOUT, L. 700 1 $aMAZZA, R. 700 1 $aTAYLOR, J. F. 700 1 $aSCHNABEL, R. D. 700 1 $aSIMPSON, B. 700 1 $aMARQUES, E. 700 1 $aMcEWAN, J. C. 700 1 $aCROMIE, A. 700 1 $aCOUTINHO, L. L. 700 1 $aKUEHN, L. A. 700 1 $aKEELE, J. W. 700 1 $aPIPER, E. K. 700 1 $aCOOK, J. 700 1 $aWILLIAMS, R. 700 1 $aTASSELL, C. P. V. 773 $tFrontiers in Genetics$gv. 4, n. 176, 2013.
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Embrapa Pecuária Sudeste (CPPSE) |
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| Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
10/05/2024 |
Data da última atualização: |
10/05/2024 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
Nacional - B |
Autoria: |
PANIZZI, A. R.; HIROSE, E.; OLIVEIRA, E. D. M. |
Afiliação: |
ANTONIO RICARDO PANIZZI, CNPSO; EDSON HIROSE, CNPSO; EMERSON D. M. OLIVEIRA. |
Título: |
Egg allocation by Megalotomus parvus (Westwood) (Heteroptera: Alydidae) on soybean. |
Ano de publicação: |
1996 |
Fonte/Imprenta: |
Anais da Sociedade Entomologica do Brasil, Londrina, v. 25, n. 3, p. 537-543, 1996. |
Idioma: |
Inglês |
Notas: |
Título em português: Alocação de ovos por Megalotomus parvus (Heteroptera: Alydidae) em soja. |
Palavras-Chave: |
Beauveria basssiana; Brasil; Fungus; Insect; Pest; Soybean. |
Thesagro: |
Controle Biológico; Diabrotica Speciosa; Fungo; Inseto; Nezara Viridula; Praga; Soja; Sternechus Subsignatus. |
Thesaurus NAL: |
biological control; Brazil. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
Marc: |
LEADER 01012naa a2200337 a 4500 001 2164196 005 2024-05-10 008 1996 bl uuuu u00u1 u #d 100 1 $aPANIZZI, A. R. 245 $aEgg allocation by Megalotomus parvus (Westwood) (Heteroptera$bAlydidae) on soybean.$h[electronic resource] 260 $c1996 500 $aTítulo em português: Alocação de ovos por Megalotomus parvus (Heteroptera: Alydidae) em soja. 650 $abiological control 650 $aBrazil 650 $aControle Biológico 650 $aDiabrotica Speciosa 650 $aFungo 650 $aInseto 650 $aNezara Viridula 650 $aPraga 650 $aSoja 650 $aSternechus Subsignatus 653 $aBeauveria basssiana 653 $aBrasil 653 $aFungus 653 $aInsect 653 $aPest 653 $aSoybean 700 1 $aHIROSE, E. 700 1 $aOLIVEIRA, E. D. M. 773 $tAnais da Sociedade Entomologica do Brasil, Londrina$gv. 25, n. 3, p. 537-543, 1996.
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