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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
27/09/2023 |
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Data da última atualização: |
27/09/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SOUZA, I. P. de; AZEVEDO, B. R. de; COELHO, A. S. G.; SOUZA, T. L. P. O. de; VALDISSER, P. A. M. R.; GOMES-MESSIAS, L. M.; FUNICHELI, B. W.; BRONDANI, C.; VIANELLO, R. P. |
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Afiliação: |
ISABELA PAVANELLI DE SOUZA, bolsista CNPAF; BEATRIZ ROSA DE AZEVEDO, bolsista CNPAF; ALEXANDRE SIQUEIRA GUEDES COELHO, UNIVERSIDADE FEDERAL DE GOIÁS; THIAGO LIVIO PESSOA OLIV DE SOUZA, CNPAF; PAULA ARIELLE M RIBEIRO VALDISSER, CNPAF; LUCAS MATIAS GOMES-MESSIAS, UNIVERSIDADE FEDERAL DE GOIÁS; BRENO OSVALDO FUNICHELI, UNIVERSIDADE FEDERAL DE SÃO CARLOS; CLAUDIO BRONDANI, CNPAF; ROSANA PEREIRA VIANELLO, CNPAF. |
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Título: |
Whole-genome resequencing of common bean elite breeding lines. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Scientific Reports, v. 13, 12721, 2023. |
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ISSN: |
2045-2322 |
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DOI: |
https://doi.org/10.1038/s41598-023-39399-6 |
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Idioma: |
Inglês |
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Conteúdo: |
The expansion of bean genome technologies has prompted new perspectives on generating resources and knowledge essential to research and implementing biotechnological tools for the practical operations of plant breeding programs. This study aimed to resequence the entire genome (whole genome sequencing?WGS) of 40 bean genotypes selected based on their significance in breeding programs worldwide, with the objective of generating an extensive database for the identification of single nucleotide polymorphisms (SNPs). Over 6 million SNPs were identified, distributed across the 11 bean chromosomes. After quality variant filtering, 420,509 high-quality SNPs were established, with an average of 38,228 SNPs per chromosome. These variants were categorized based on their predicted effects, revealing that the majority exerted a modifier impact on non-coding genome regions (94.68%). Notably, a significant proportion of SNPs occurred in intergenic regions (62.89%) and at least one SNP was identified in 58.63% of the genes annotated in the bean genome. Of particular interest, 7841 SNPs were identified in 85% of the putative plant disease defense-related genes, presenting a valuable resource for crop breeding efforts. These findings provide a foundation for the development of innovative and broadly applicable technologies for the routine selection of superior genotypes in global bean improvement and germplasm characterization programs. |
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Thesagro: |
Feijão; Genoma; Melhoramento. |
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Thesaurus Nal: |
Beans; Breeding; Breeding lines; Genome; Genotype; Single nucleotide polymorphism. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1156925/1/sr-2023.pdf
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Marc: |
LEADER 02407naa a2200349 a 4500
001 2156925
005 2023-09-27
008 2023 bl uuuu u00u1 u #d
022 $a2045-2322
024 7 $ahttps://doi.org/10.1038/s41598-023-39399-6$2DOI
100 1 $aSOUZA, I. P. de
245 $aWhole-genome resequencing of common bean elite breeding lines.$h[electronic resource]
260 $c2023
520 $aThe expansion of bean genome technologies has prompted new perspectives on generating resources and knowledge essential to research and implementing biotechnological tools for the practical operations of plant breeding programs. This study aimed to resequence the entire genome (whole genome sequencing?WGS) of 40 bean genotypes selected based on their significance in breeding programs worldwide, with the objective of generating an extensive database for the identification of single nucleotide polymorphisms (SNPs). Over 6 million SNPs were identified, distributed across the 11 bean chromosomes. After quality variant filtering, 420,509 high-quality SNPs were established, with an average of 38,228 SNPs per chromosome. These variants were categorized based on their predicted effects, revealing that the majority exerted a modifier impact on non-coding genome regions (94.68%). Notably, a significant proportion of SNPs occurred in intergenic regions (62.89%) and at least one SNP was identified in 58.63% of the genes annotated in the bean genome. Of particular interest, 7841 SNPs were identified in 85% of the putative plant disease defense-related genes, presenting a valuable resource for crop breeding efforts. These findings provide a foundation for the development of innovative and broadly applicable technologies for the routine selection of superior genotypes in global bean improvement and germplasm characterization programs.
650 $aBeans
650 $aBreeding
650 $aBreeding lines
650 $aGenome
650 $aGenotype
650 $aSingle nucleotide polymorphism
650 $aFeijão
650 $aGenoma
650 $aMelhoramento
700 1 $aAZEVEDO, B. R. de
700 1 $aCOELHO, A. S. G.
700 1 $aSOUZA, T. L. P. O. de
700 1 $aVALDISSER, P. A. M. R.
700 1 $aGOMES-MESSIAS, L. M.
700 1 $aFUNICHELI, B. W.
700 1 $aBRONDANI, C.
700 1 $aVIANELLO, R. P.
773 $tScientific Reports$gv. 13, 12721, 2023.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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Voltar
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Registro Completo
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
21/11/2019 |
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Data da última atualização: |
07/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
TOSCANO, J. H. B.; OKINO, C. H.; VON HAEHLING; SANTOS, I. B. dos; GIRALDELO, L. A.; FIGUEIREDO, A.; ESTEVES, S. N.; FERRAZ JUNIOR, R. S.; BASSETO, C. C.; AMARANTE, F. T. do; CHAGAS, A. C. de S. |
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Afiliação: |
João Henrique Barbosa Toscano, UNESP; CINTIA HIROMI OKINO, CPPSE; Marei Borsch Von Haehling, UNESP; Isabella Barbosa dos Santos, UNESP; Luciana Aparecida Giraldelo, UNESP; Amanda Figueiredo, UNESP; SERGIO NOVITA ESTEVES, CPPSE; REINIVALDO SERGIO FERRAZ JUNIOR, CPPSE; César Cristiano Bassetto, UNESP; Francisco Talamini do Amarante, UNESP; ANA CAROLINA DE SOUZA CHAGAS, CPPSE. |
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Título: |
Systemic immune responses associated to Haemonchus contortus resistance in a resistant Brazilian sheep breed (Morada Nova). |
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Ano de publicação: |
2019 |
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Fonte/Imprenta: |
In: INTERNATIONAL VETERINARY IMMUNOLOGY SYMPOSIUM, 12., 2019, Seattle. Proceedings... Seattle: AAVI, 2019. |
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Páginas: |
p.119. |
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Idioma: |
Inglês |
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Conteúdo: |
Haemonchus contortus infection is the greatest cause of economic losses in sheep production worldwide. |
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Palavras-Chave: |
Anthelmintic resistance; Parasite infections. |
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Thesagro: |
Haemonchus Contortus. |
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Thesaurus NAL: |
Animal parasites and pests; Sheep. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/205153/1/Abstractbook-Systemic-immune-responses.pdf
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Marc: |
LEADER 01087nam a2200301 a 4500
001 2114824
005 2020-01-07
008 2019 bl uuuu u00u1 u #d
100 1 $aTOSCANO, J. H. B.
245 $aSystemic immune responses associated to Haemonchus contortus resistance in a resistant Brazilian sheep breed (Morada Nova).$h[electronic resource]
260 $aIn: INTERNATIONAL VETERINARY IMMUNOLOGY SYMPOSIUM, 12., 2019, Seattle. Proceedings... Seattle: AAVI$c2019
300 $ap.119.
520 $aHaemonchus contortus infection is the greatest cause of economic losses in sheep production worldwide.
650 $aAnimal parasites and pests
650 $aSheep
650 $aHaemonchus Contortus
653 $aAnthelmintic resistance
653 $aParasite infections
700 1 $aOKINO, C. H.
700 1 $aVON HAEHLING
700 1 $aSANTOS, I. B. dos
700 1 $aGIRALDELO, L. A.
700 1 $aFIGUEIREDO, A.
700 1 $aESTEVES, S. N.
700 1 $aFERRAZ JUNIOR, R. S.
700 1 $aBASSETO, C. C.
700 1 $aAMARANTE, F. T. do
700 1 $aCHAGAS, A. C. de S.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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