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| Registros recuperados : 20 | |
| 3. |  | WERNER, J. P. S.; OLIVEIRA, S. R. de M.; ESQUERDO, J. C. D. M. Classificação de áreas algodoeiras utilizando séries temporais de imagens Modis. In: MOSTRA DE ESTAGIÁRIOS E BOLSISTAS DA EMBRAPA INFORMÁTICA AGROPCUÁRIA, 13., 2017, Campinas. Resumos expandidos... Brasília, DF: Embrapa, 2017. p. 34-38. Editores técnicos: Giampaolo Queiroz Pellegrino, Luciana Guilherme Sacomani Zenerato, Maria Fernanda Moura, Maria Giulia Croce, Poliana Fernanda Giachetto.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 6. | | ALMEIDA, H. S. L.; REIS, A. A. dos; WERNER, J. P. S.; ANTUNES, J. F. G.; ZHONG, L.; FIGUEIREDO, G. K. D. A.; ESQUERDO, J. C. D. M.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G. Deep neural networks for mapping integrated crop-livestock systems using PlanetScope time series. IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM, 2021, Brussels. Proceedings [...]. [S. l.]: IEEE, 2021. p. 4224-4227. IGARSS 2021. Paper WE2.MM-8.3.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 7. | | TORO, A. P. S. G. D.; WERNER, J. P. S.; REIS, A. A. dos; ESQUERDO, J. C. D. M.; ANTUNES, J. F. G.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G.; FIGUEIREDO, G. K. D. A. Evaluation of early season mapping of integrated crop livestock systems using Sentinel-2 data. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, v. 43, B3, p. 1335-1340, 2022. Edition of proceedings of the 2022 edition of the XXIVth ISPRS Congress, Nice, France.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 8. | | REIS, A. A. dos; WERNER, J. P. S.; SILVA, B. C. da; ANTUNES, J. F. G.; ESQUERDO, J. C. D. M.; FIGUEIREDO, G. K. D. A.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G. Can canopy height of mixed pastures in integrated crop-livestock systems be estimated using planetscope imagery? In: WORLD CONGRESS ON INTEGRATED CROP-LIVESTOCK-FORESTRY SYSTEMS, 2., 2021. Proceedings reference. Brasília, DF: Embrapa, 2021. p. 658-663. WCCLF 2021. Evento online.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 9. | | BUENO, I. T.; ANTUNES, J. F. G.; TORO, A. P. S. G. D.; WERNER, J. P. S.; COUTINHO, A. C.; FIGUEIREDO, G. K. D. A.; LAMPARELLI, R. A. C.; ESQUERDO, J. C. D. M.; MAGALHÃES, P. S. G. Land use/land cover classification in a heterogeneous agricultural landscape using PlanetScope data. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, v. XLVIII-M-1-2023, p. 49-55, 2023. Edition of proceedings of the 39th International Symposium on Remote Sensing of Environment (ISRSE-39) "From Human Needs to SDGs", 2023, Antalya, Türkiye.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 10. | | BUENO, I. T.; ANTUNES, J. F. G.; TORO, A. P. S. G. D.; WERNER, J. P. S.; LAMPARELLI, R. A. C.; COUTINHO, A. C.; FIGUEIREDO, G. K. D. A.; ESQUERDO, J. C. D. M.; MAGALHÃES, P. S. G. Land use/land cover classification and scale effect analysis for a multi-temporal superpixel-based segmentation using PlanetScope data. In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 20., 2023, Florianópolis. Anais [...]. São José dos Campos: Instituto Nacional de Pesquisas Espaciais, 2023. p. 304-307. Editores: Douglas Francisco Marcolino Gherardi, Ieda Del´Arco Sanches, Luiz Eduardo Oliveira e Cruz de Aragão.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 11. | | BUENO, I. T.; ANTUNES, J. F. G.; REIS, A. A. dos; WERNER, J. P. S.; TORO, A. P.; FIGUEIREDO, G. K. D. A.; ESQUERDO, J. C. D. M.; LAMPARELLI, R. A. C.; COUTINHO, A. C.; MAGALHÃES, P. S. G. Mapping integrated crop-livestock systems in Brazil with planetscope time series and deep learning. Remote Sensing of Environment, v. 299, 113886, Dec. 2023.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 12. | | TORO, A. P. S. G. D. D.; BUENO, I. T.; WERNER, J. P. S.; ANTUNES, J. F. G.; LAMPARELLI, R. A. C.; COUTINHO, A. C.; ESQUERDO, J. C. D. M.; MAGALHÃES, P. S. G.; FIGUEIREDO, G. K. D. A. SAR and optical data applied to early-season mapping of integrated crop-livestock systems using deep and machine learning algorithms. Remote Sensing, v. 15, n. 4, 1130, Feb. 2023.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 13. | | REIS, A. A. dos; WERNER, J. P. S.; SILVA, B. C.; FIGUEIREDO, G. K. D. A.; ANTUNES, J. F. G.; ESQUERDO, J. C. D. M.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; ROCHA, J. V.; MAGALHÃES, P. S. G. Monitoring pasture aboveground biomass and canopy height in an integrated crop-livestock system using textural information from PlanetScope imagery. Remote Sensing, v. 12, n. 16, p. 1-21, Aug. 2020. Article number: 2534.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 14. | | ANTUNES, J. F. G.; REIS, A. A. dos; ALMEIDA, H. S. L.; WERNER, J. P. S.; FIGUEIREDO, G. K. D. A.; ESQUERDO, J. C. D. M.; BUENO, I. T.; TORO, A. P. S. G. D.; LAMPARELLI, R. A. C.; COUTINHO, A. C.; MAGALHÃES, P. S. G. Classification of integrated crop-livestock systems using PlanetScope time series. In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 20., 2023, Florianópolis. Anais [...]. São José dos Campos: Instituto Nacional de Pesquisas Espaciais, 2023. p. 916-919. Editores: Douglas Francisco Marcolino Gherardi, Ieda Del´Arco Sanches, Luiz Eduardo Oliveira e Cruz de Aragão.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 15. | | REIS, A. A. dos; SILVA, B. C.; WERNER, J. P. S.; SILVA, Y. F.; ROCHA, J. V.; FIGUEIREDO, G. K. D. A.; ANTUNES, J. F. G.; ESQUERDO, J. C. D. M.; COUTINHO, A. C.; LAMPARELLI, R. A. C; MAGALHÃES, P. S. G. Exploring the potential of high-resolution PlanetScope imagery for pasture biomass estimation in an integrated crop-livestock system. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, v. 42-3, W12, p. 419-424, 2020. Publicado também em: IEEE LATIN AMERICAN GRSS; ISPRS REMOTE SENSING CONFERENCE, Santiago, 2020. Proceedings... [Piscataway]: IEEE, 2020. p. 675-680. LAGIRS 2020.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 16. | | TORO, A. P. S. G. D.; CAPUCCI, G.; WERNER, J. P. S.; BUENO, I. T.; ESQUERDO, J. C. D. M.; ANTUNES, J. F. G.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G.; OLIVEIRA JÚNIOR, J. G.; FIGUEIREDO, G. K. D. A. Effects of the different precipitation levels on SAR data. In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 20., 2023, Florianópolis. Anais [...]. São José dos Campos: Instituto Nacional de Pesquisas Espaciais, 2023. p. 3088-3091. Editores: Douglas Francisco Marcolino Gherardi, Ieda Del´Arco Sanches, Luiz Eduardo Oliveira e Cruz de Aragão.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 17. | | SANTOS, L. T. dos; WERNER, J. P. S.; REIS, A. A. dos; TORO, A. P. G.; ANTUNES, J. F. G.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G.; ESQUERDO, J. C. D. M.; FIGUEIREDO, G. K. D. A. Multitemporal segmentation of Sentinel-2 images in an agricultural intensification region in Brazil. ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, v. V-3-2022, p. 389-395, 2022. Edition of proceedings of the 2022 edition of the XXIVth ISPRS Congress, Nice, France.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 18. | | OLIVEIRA JÚNIOR, J. G. de; WERNER, J. P. S.; TORO, A. P. S. G. D.; BUENO, I. T.; ESQUERDO, J. C. D. M.; ANTUNES, J. F. G.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G.; SHIBUYA, D. H.; JOAQUIM, L. F.; FIGUEIREDO, G. K. D. A. Verificação do potencial de sistemas de integração lavoura-pecuária na recuperação de áreas de pastagens degradadas. In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 20., 2023, Florianópolis. Anais [...]. São José dos Campos: Instituto Nacional de Pesquisas Espaciais, 2023. p. 1858-1861. Editores: Douglas Francisco Marcolino Gherardi, Ieda Del´Arco Sanches, Luiz Eduardo Oliveira e Cruz de Aragão.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 19. | | WERNER, J. P. S.; REIS, A. A. dos; TORO, A. P. S. G. D.; BUENO, I. T.; ANTUNES, J. F. G.; COUTINHO, A. C.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G.; ESQUERDO, J. C. D. M.; FIGUEIREDO, G. K. D. A. Temporal comparison of multiple sensors for monitoring paddock management in an integrated crop-livestock system. In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 20., 2023, Florianópolis. Anais [...]. São José dos Campos: Instituto Nacional de Pesquisas Espaciais, 2023. p. 869-872. Editores: Douglas Francisco Marcolino Gherardi, Ieda Del´Arco Sanches, Luiz Eduardo Oliveira e Cruz de Aragão.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 20. | | WERNER, J. P. S.; BELGIU, M.; BUENO, I. T.; REIS, A. A. dos; TORO, A. P. S. G. D.; ANTUNES, J. F. G.; STEIN, A.; LAMPARELLI, R. A. C.; MAGALHÃES, P. S. G.; COUTINHO, A. C.; ESQUERDO, J. C. D. M.; FIGUEIREDO, G. K. D. A. Mapping integrated crop–livestock systems using fused Sentinel-2 and PlanetScope time series and deep learning. Remote Sensing, v. 16, n. 8, p. 1421, Apr. 2024.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 20 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
10/02/2023 |
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Data da última atualização: |
14/06/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
PERIPOLLI, E.; STAFUZZA, N. B.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SILVA, M. V. G. B. |
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Afiliação: |
ELISA PERIPOLLI, Universidade Estadual Paulista; NEDENIA BONVINO STAFUZZA, Centro de Pesquisa em Bovinos de Corte; MARCO ANTONIO MACHADO, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; ANDREA ALVES DO EGITO, CNPGC; FERNANDO BALDI, Universidade Estadual Paulista; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. |
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Título: |
Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Animal Genetics, v. 54, n. 3, p. 254-270, 2023. |
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DOI: |
https://doi.org/10.1111/age.13298 |
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Idioma: |
Inglês |
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Conteúdo: |
Further characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective pressures and phenotype variation. A comprehensive genome-wide assessment of copy number variations (CNVs) based on whole-genome re-sequencing data was performed on three Brazilian locally adapted cattle breeds (Caracu Caldeano, Crioulo Lageano, and Pantaneiro) using the ARS-UCD1.2 genome assembly. Data from 36 individuals with an average coverage depth of 14.07× per individual was used. A total of 24?945 CNVs were identified distributed among the breeds (Caracu Caldeano = 7285, Crioulo Lageano = 7297, and Pantaneiro = 10 363). Deletion events were 1.75?2.07-fold higher than duplications, and the total length of CNVs is composed mostly of a high number of segments between 10 and 30?kb. CNV regions (CNVRs) are not uniformly scattered throughout the genomes (n = 463), and 105 CNVRs were found overlapping among the studied breeds. Functional annotation of the CNVRs revealed variants with high consequence on protein sequence harboring relevant genes, in which we highlighted the BOLA-DQB, BOLA-DQA5, CD1A, ?-defensins, PRG3, and ULBP21 genes. Enrichment analysis based on the gene list retrieved from the CNVRs disclosed over-represented terms (p?MenosFurther characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective pressures and phenotype variation. A comprehensive genome-wide assessment of copy number variations (CNVs) based on whole-genome re-sequencing data was performed on three Brazilian locally adapted cattle breeds (Caracu Caldeano, Crioulo Lageano, and Pantaneiro) using the ARS-UCD1.2 genome assembly. Data from 36 individuals with an average coverage depth of 14.07× per individual was used. A total of 24?945 CNVs were identified distributed among the breeds (Caracu Caldeano = 7285, Crioulo Lageano = 7297, and Pantaneiro = 10 363). Deletion events were 1.75?2.07-fold higher than duplications, and the total length of CNVs is composed mostly of a high number of segments between 10 and 30?kb. CNV regions (CNVRs) are not uniformly scattered throughout the genomes (n = 463), and 105 CNVRs were found overlapping among the studied breeds. Functional annotation of the CNVRs revealed variants with high consequence on protein sequence harboring relevant genes, in which we highlighted the BOLA-DQB, BOLA-DQA5, CD1A, ?-defensins, PRG3, and ULBP21 genes. Enrichment analysis based on the gene list retrieved from the CNVRs disclosed over-represented terms (p?Mostrar Tudo |
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Palavras-Chave: |
Variação fenotípica. |
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Thesagro: |
Bovino; Gado Crioulo; Genoma; Raça. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1151656/1/Assessment-of-copy-number-variants-in-three-Brazilian.pdf
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Marc: |
LEADER 02604naa a2200265 a 4500
001 2151656
005 2023-06-14
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1111/age.13298$2DOI
100 1 $aPERIPOLLI, E.
245 $aAssessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data.$h[electronic resource]
260 $c2023
520 $aFurther characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective pressures and phenotype variation. A comprehensive genome-wide assessment of copy number variations (CNVs) based on whole-genome re-sequencing data was performed on three Brazilian locally adapted cattle breeds (Caracu Caldeano, Crioulo Lageano, and Pantaneiro) using the ARS-UCD1.2 genome assembly. Data from 36 individuals with an average coverage depth of 14.07× per individual was used. A total of 24?945 CNVs were identified distributed among the breeds (Caracu Caldeano = 7285, Crioulo Lageano = 7297, and Pantaneiro = 10 363). Deletion events were 1.75?2.07-fold higher than duplications, and the total length of CNVs is composed mostly of a high number of segments between 10 and 30?kb. CNV regions (CNVRs) are not uniformly scattered throughout the genomes (n = 463), and 105 CNVRs were found overlapping among the studied breeds. Functional annotation of the CNVRs revealed variants with high consequence on protein sequence harboring relevant genes, in which we highlighted the BOLA-DQB, BOLA-DQA5, CD1A, ?-defensins, PRG3, and ULBP21 genes. Enrichment analysis based on the gene list retrieved from the CNVRs disclosed over-represented terms (p?<?0.01) strongly associated with immunity and cattle resilience to harsh environments. Additionally, QTL associated with body conformation and dairy-related traits were also unveiled within the CNVRs. These results provide better understanding of the selective forces shaping the genome of such cattle breeds and identify traces of natural selection pressures by which these populations have been exposed to challenging environmental conditions.
650 $aBovino
650 $aGado Crioulo
650 $aGenoma
650 $aRaça
653 $aVariação fenotípica
700 1 $aSTAFUZZA, N. B.
700 1 $aMACHADO, M. A.
700 1 $aPANETTO, J. C. do C.
700 1 $aEGITO, A. A. do
700 1 $aBALDI, F.
700 1 $aSILVA, M. V. G. B.
773 $tAnimal Genetics$gv. 54, n. 3, p. 254-270, 2023.
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