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| Registros recuperados : 35 | |
| 2. |  | NASCIMENTO, G. B.; VENTURA, R. V.; LEDUR, M. C.; SAVEGNAGO, R. P.; SENO, L. de O.; MUNARI, D. P. Inbreeding effect and genotyping strategies for genomic selection in simulated data. In: INTERNATIONAL SYMPOSIUM ON ANIMAL FUNCTIONAL GENOMICS, 5., 2013, Guarujá. Programme and abstract book... [S.l.: s.n.], 2013. p. 41. ISAFG 2013. AB 34.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 4. | | CARRARA, E. R.; LOPES, P. S.; PEREZ, B. C.; VENTURA, R. V.; JOSAHKIAN, L. A.; PEIXOTO, M. G. C. D. Inbreeding and its effects on milk, growth, and reproductive traits in Guzerá cattle clustered by genetic similarity. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 56., 2021, Florianópolis. Animal science: challenges in production and sustainability: proceedings... Brasília, DF: Sociedade Brasileira de Zootecnia, 2021. p. 336. Evento virtual.| Biblioteca(s): Embrapa Gado de Leite. |
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| 6. | | CHUD, T. C. S.; VENTURA, R. V.; SCHENKEL. F. S.; URBINATI, I.; CARVALHEIRO, R.; REGITANO, L. C. de A.; MARCONDES, C. R.; MINARI, D. P. Accuracy of genotype imputation in Canchim cattle using FImpute and Beagle software., In: INTERNATIONAL SYMPOSIUM ON ANIMAL FUNCTIONAL GENOMICS, 5., 2013, Guarujá. Abstract... Guarujá:[ s.n.], 2013. AB.20.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 7. | | FRIDRICH, A. B.; SILVA, M. A.; VALENTE, B. D.; SOUSA, J. E. R.; CORRÊA, G. S. S.; FERREIRA, I. C.; VENTURA, R. V.; SILVA, L. O. C. Interação genótipo x ambiente e estimativas de parâmetros genéticos dos pesos aos 205 e 365 dias de idade de bovinos Nelore. Arquivo Brasileiro de Medicina Veterinária e Zootecnia, Belo Horizonte, v. 60, n. 4, p. 917-925, ago. 2008.| Biblioteca(s): Embrapa Gado de Corte. |
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| 8. | | FREITAS, L. S.; SILVA, M. A.; VERNEQUE, R. S.; SANTOS, G. G.; CORRÊA, G. S.; VALENTE, B. D.; PEIXOTO, M. G. C. D.; VENTURA, R. V. Comparação de modelos de regressão aleatória, para avaliação genética da produção de leite no dia do controle de vacas Guzerá. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 7., 2008, São Carlos. Anais... São Carlos: SBMA, 2008. 1 CD.| Biblioteca(s): Embrapa Gado de Leite. |
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| 9. | | SIMONELLI, S. M.; SILVA, M. A.; SILVA, L. O. C. da; PEREIRA, J. C. C.; SOUZA, J. E. R.; VENTURA, R. V.; VALENTE, B. D. Critérios de seleção para características de crescimento em bovinos da raça Nelore. Arquivo Brasileiro de Medicina Veterinária e Zootecnia, Belo Horizonte, v. 56, n. 3, p. 374-384, jun. 2004. Título em inglês: Selection criteria for growth traits in Nellore cattle.| Biblioteca(s): Embrapa Gado de Corte. |
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| 11. | | BUZANSKAS, M. E.; VENTURA, R. V.; REGITANO, L. C. de A.; SCHENKEL, F. S.; ALENCAR, M. M. de; MUNARI, D. P. Estudo de associações genômicas para idade ao primeiro e segundo parto em bovinos da raça Canchim. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 10., 2013, Uberaba. Anais... Belo Horizonte: SBMA, 2013. 3 p.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 12. | | VIZONA, R. G.; PEREZ, B. da C.; PEIXOTO, M. G. C. D.; VIANA, J. H. M.; VENTURA, R. V.; VERCESI FILHO, A. E.; BALIEIRO, J. C. de C. Genetic analysis of in-vitro embryo production traits in Dairy Gir cattle. Theriogenology, v. 148, p. 149-161, 2020.| Biblioteca(s): Embrapa Gado de Leite; Embrapa Recursos Genéticos e Biotecnologia. |
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| 13. | | BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; CHUD, T. C. S.; URBINATI, I.; MEIRELLES, S. L. C.; MOKRY, F. B.; SCHENKEL, F. S.; REGITANO, L. C. de A.; MUNARI, D. P. Genome-wide association study on long-yearling scrotal circumference in Canchim cattle. In:WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings...Vancouver: WCGALP: Amarican Society of Animal Science, 2014.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 14. | | BUSS, C. E.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de; MUDADU, M. de A.; CESAR, A. S. M.; VENTURA, R. V.; AFONSO, J.; LIMA, A. O. de; COUTINHO, L. L.; TULLIO, R. R.; REGITANO, L. C. de A. Genome-wide efficient mixed-model study for meat quality in Nellore cattle. Journal of Animal Science, v. 94, e-suppl. 5; Journal of Dairy Science, v. 99, e-suppl. 1, p. 159, jul. 2016.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 15. | | BUSS, C. E.; TIZIOTO, P. C.; OLIVEIRA, P. S. N.; MUDADU, M. de A.; CESAR, A. S. M.; VENTURA, R. V.; AFONSO, J.; LIMA, A. O. D.; COUTINHO, L. L.; TULLIO, R. R.; REGITANO, L. C. de A. Genome-wide efficient mixed-model study for meat quality in Nellore cattle. Journal of Animal Science, v. 94, p. 428-429, 2016. Supplement 5. Na publicação: M. A. Mudadu.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 16. | | PERIPOLLI, E.; OLIVIERI. B. F.; FEITOSA, F. L. B.; LEMOS, M. V. A. de; TONUSSI, R. L.; MUNARI, D. P.; PANETTO, J. C. do C.; MACHADO, M. A.; VENTURA, R. V.; BALDI, F.; SILVA, M. V. G. B. Avaliação dos coeficientes de endogamia em bovinos da raça Gir (Bos primigenius indicus) In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto. Anais... Ribeirão Preto: SBMA, 2017. 3 p.| Biblioteca(s): Embrapa Gado de Leite. |
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| 17. | | PERIPOLLI, E.; STAFUZZA, N. B.; MUNARI, D. P.; LIMA, A. L. F.; IRGANG, R.; MACHADO, M. A.; PANETTO, J. C. do C.; VENTURA, R. V.; BALDI, F.; SILVA, M. V. G. B. Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle. BMC Genomics, v. 19, n. 34, 2018. 13 p.| Biblioteca(s): Embrapa Gado de Leite. |
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| 18. | | FRIDRICH, A. B.; SILVA, M. de A. e; FERREIRA, I. C.; CORRÊA, G. da S. S.; SOUZA, J. E. R. de; VENTURA, R. V.; PEREIRA, J. C. C.; SILVA, L. O. C. da. Estimativas de parâmetros genéticos dos pesos à desmama e a um ano de idade de bovinos da raça Tabapuã nas regiões brasileiras Sul, Sudeste, Centro-Oeste e Nordeste. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 41., 2004, Campo Grande, MS. A produção animal e a segurança alimentar: anais dos simpósios e dos resumos. Campo Grande, MS: Sociedade Brasileira de Zootecnia: Embrapa Gado de Corte, 2004. 5 p. MELH 011. 1 CD-ROM. CNPGC.| Biblioteca(s): Embrapa Gado de Corte. |
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| 19. | | OLIVEIRA JÚNIOR, G. A.; CHUD, T. C. S.; VENTURA, R. V.; GARRICK, D. J.; COLE, J. B.; MUNARI, D. P.; FERRAZ, J. B. S.; MULLART, E.; DeNISE, S.; SMITH, S.; SILVA, M. V. G. B. Genotype imputation in a tropical crossbred dairy cattle population. Journal of Dairy Science, v. 100, n. 12, p. 9623-9634, 2017.| Biblioteca(s): Embrapa Gado de Leite. |
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| 20. | | MORALES, D. DA S.; SILVA, D. O.; AYRES, D. R.; SANTANA JÚNIOR, M. L.; BIGNARDI, A. B.; VENTURA, R. V.; MENEZES, G. R. de O.; CARVALHEIRO, R.; PICCOLI, M. L.; ROSO, V. M.; PEREIRA, R. J. Genetic associations between stayability to consecutive calvings and traits of economic interest in taurine and zebu breeds. Journal of Animal Breeding and Genetics, v. 140, 2023. 13 p.| Biblioteca(s): Embrapa Gado de Corte. |
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| Registros recuperados : 35 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
08/12/2020 |
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Data da última atualização: |
08/12/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
CARDOSO, D. F.; FERNANDES JÚNIOR, G. A.; SCALEZ, D. C. B.; ALVEZ, A. A. C.; MAGALHÃES, A. F. B.; BRESOLIN, T.; VENTURA, R. V.; LI, C.; OLIVEIRA, M. C. de S.; PORTO NETO, L. R.; CARVALHEIRO, R.; OLIVEIRA, H. N. de; TONHATI, H.; ALBUQUERQUE, L. G. |
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Afiliação: |
Diercles Francisco Cardoso, UNESP; Gerardo Alves Fernandes Júnior, UNESP; Daiane Cristina Becker Scalez, UNESP; Anderson Antonio Carvalho Alves, UNESP; Ana Fabrícia Braga Magalhães, UNESP; Tiago Bresolin, UNESP; Ricardo Vieira Ventura, USP; Changxi Li, University of Alberta; MARCIA CRISTINA DE SENA OLIVEIRA, CPPSE; Laercio Ribeiro Porto-Neto, CSIRO; Roberto Carvalheiro, UNESP; Henrique Nunes de Oliveira, UNESP; Humberto Tonhati, UNESP; Lucia Galvão Albuquerque, UNESP. |
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Título: |
Uncovering sub-structure and genomic profiles in across-countries subpopulations of Angus Cattle. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Scientific Reports, v. 10, article 8770, 2020. |
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Páginas: |
11 p. |
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DOI: |
https://doi.org/10.1038/s41598-020-65565-1 |
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Idioma: |
Inglês |
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Conteúdo: |
Highlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N?= 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via FST and varLD tests. The principal component analysis revealed a sub-structure with a close connection between the two subpopulations. The averages of genomic relationships, inbreeding coefficients, and linkage disequilibrium at varying genomic distances were rather similar across them, suggesting non-accentuated differences in overall genomic diversity. Autozygosity islands revealed selection signatures common to both subpopulations at chromosomes 13 (63.77?65.25 Mb) and 14 (22.81?23.57 Mb), which are notably known regions affecting growth traits. Nevertheless, further autozygosity islands along with FST and varLD tests unravel particular sites with accentuated population subdivision at BTAs 7 and 18 overlapping with known QTL and candidate genes of reproductive performance, thermoregulation, and resistance to infectious diseases. Our findings indicate overall genomic similarity between Angus subpopulations, with noticeable signals of divergent selection in genomic regions associated with the adaptation in different environments. MenosHighlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N?= 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via FST and varLD tests. The principal component analysis revealed a sub-structure with a close connection between the two subpopulations. The averages of genomic relationships, inbreeding coefficients, and linkage disequilibrium at varying genomic distances were rather similar across them, suggesting non-accentuated differences in overall genomic diversity. Autozygosity islands revealed selection signatures common to both subpopulations at chromosomes 13 (63.77?65.25 Mb) and 14 (22.81?23.57 Mb), which are notably known regions affecting growth traits. Nevertheless, further autozygosity islands along with FST and varLD tests unravel particular sites with accentuated population subdivision at BTAs 7 and 18 overlapping with known QTL and candidate genes of reproductive performance, thermoregulation, and resistance to infectious diseases. Our findings indicate overall genomi... Mostrar Tudo |
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Palavras-Chave: |
Autozygosity islands; FST; Overall genomic diversity; Rather similar across; ROH islands; VarLD signals. |
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Thesaurus NAL: |
Angus. |
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Categoria do assunto: |
H Saúde e Patologia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/218925/1/UncoveringSubStructure.pdf
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Marc: |
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024 7 $ahttps://doi.org/10.1038/s41598-020-65565-1$2DOI
100 1 $aCARDOSO, D. F.
245 $aUncovering sub-structure and genomic profiles in across-countries subpopulations of Angus Cattle.$h[electronic resource]
260 $c2020
300 $a11 p.
520 $aHighlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N?= 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via FST and varLD tests. The principal component analysis revealed a sub-structure with a close connection between the two subpopulations. The averages of genomic relationships, inbreeding coefficients, and linkage disequilibrium at varying genomic distances were rather similar across them, suggesting non-accentuated differences in overall genomic diversity. Autozygosity islands revealed selection signatures common to both subpopulations at chromosomes 13 (63.77?65.25 Mb) and 14 (22.81?23.57 Mb), which are notably known regions affecting growth traits. Nevertheless, further autozygosity islands along with FST and varLD tests unravel particular sites with accentuated population subdivision at BTAs 7 and 18 overlapping with known QTL and candidate genes of reproductive performance, thermoregulation, and resistance to infectious diseases. Our findings indicate overall genomic similarity between Angus subpopulations, with noticeable signals of divergent selection in genomic regions associated with the adaptation in different environments.
650 $aAngus
653 $aAutozygosity islands
653 $aFST
653 $aOverall genomic diversity
653 $aRather similar across
653 $aROH islands
653 $aVarLD signals
700 1 $aFERNANDES JÚNIOR, G. A.
700 1 $aSCALEZ, D. C. B.
700 1 $aALVEZ, A. A. C.
700 1 $aMAGALHÃES, A. F. B.
700 1 $aBRESOLIN, T.
700 1 $aVENTURA, R. V.
700 1 $aLI, C.
700 1 $aOLIVEIRA, M. C. de S.
700 1 $aPORTO NETO, L. R.
700 1 $aCARVALHEIRO, R.
700 1 $aOLIVEIRA, H. N. de
700 1 $aTONHATI, H.
700 1 $aALBUQUERQUE, L. G.
773 $tScientific Reports$gv. 10, article 8770, 2020.
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Embrapa Pecuária Sudeste (CPPSE) |
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