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Registro Completo |
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Biblioteca(s): |
Embrapa Cerrados. |
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Data corrente: |
12/12/2018 |
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Data da última atualização: |
12/12/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PERIPOLLI, E.; METZGER, J.; LEMOS, M. V. A. de; STAFUZZA, N. B.; KLUSKA, S.; OLIVIERI, B. F.; FEITOSA, F. L. B.; BERTON, M. P.; LOPES, F. B.; MUNARI, D. P.; LOBO, R. B.; MAGNABOSCO, C. de U.; DI CROCE, F.; OSTERSTOCK, J.; DENISE, S.; PEREIRA, A. S. C.; BALDI, F. |
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Afiliação: |
ELISA PERIPOLLI, UNESP; JULIA METZGER, University of Veterinary Medicine Hannover; MARCOS VINICIUS ANTUNES DE LEMOS, UNESP; NEDENIA BONVINOSTAFUZZA, UNESP; SABRINA KLUSKA, UNESP; BIANCA FERREIRA OLIVIERI, UNESP; FABIELI LOUISE BRAGA FEITOSA, UNESP; MARIANA PIATTO BERTON, UNESP; FERNANDO BRITO LOPES, UNESP; DANISIO PRADO MUNARI, UNESP; RAYSILDO BARBOSA LOBO, Associação Nacional de Criadores e Pesquisadores; CLAUDIO DE ULHOA MAGNABOSCO, CPAC; FERNANDO DI CROCE, Zoetis; JASON OSTERSTOCK, Zoetis; SUE DENISE, Zoetis; ANGELICA SIMONE CRAVO PEREIRA, USP; FERNANDO BALDI, UNESP. |
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Título: |
Autozygosity islands and ROH patterns in Nellore lineages: evidence of selection for functionally important traits. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
BMC Genomics, v. 19, 680, 2018. |
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DOI: |
https://dx.doi.org/10.1186%2Fs12864-018-5060-8 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract Background The aim of this study was to assess genome-wide autozygosity in a Nellore cattle population and to characterize ROH patterns and autozygosity islands that may have occurred due to selection within its lineages. It attempts also to compare estimates of inbreeding calculated from ROH (FROH), genomic relationship matrix (FGRM), and pedigree-based coefficient (FPED). Results The average number of ROH per animal was 55.15 ± 13.01 with an average size of 3.24 Mb. The Nellore genome is composed mostly by a high number of shorter segments accounting for 78% of all ROH, although the proportion of the genome covered by them was relatively small. The genome autozygosity proportion indicates moderate to high inbreeding levels for classical standards, with an average value of 7.15% (178.70 Mb). The average of FPED and FROH, and their correlations (− 0.05 to 0.26) were low. Estimates of correlation between FGRM-FPED was zero, while the correlation (− 0.01 to − 0.07) between FGRM-FROH decreased as a function of ROH length, except for FROH > 8Mb (− 0.03). Overall, inbreeding coefficients were not high for the genotyped animals. Autozygosity islands were evident across the genome (n = 62) and their genomic location did not largely differ within lineages. Enriched terms (p < 0.01) associated with defense response to bacteria (GO:0042742), immune complex reaction (GO:0045647), pregnancy-associated glycoproteins genes (GO:0030163), and organism growth (GO:0040014) were described within the autozygotic islands. Conclusions Low FPED-FROH correlation estimates indicate that FPED is not the most suitable method for capturing ancient inbreeding when the pedigree does not extend back many generations and FROH should be used instead. Enriched terms (p < 0.01) suggest a strong selection for immune response. Non-overlapping islands within the lineages greatly explain the mechanism underlying selection for functionally important traits in Nellore cattle. MenosAbstract Background The aim of this study was to assess genome-wide autozygosity in a Nellore cattle population and to characterize ROH patterns and autozygosity islands that may have occurred due to selection within its lineages. It attempts also to compare estimates of inbreeding calculated from ROH (FROH), genomic relationship matrix (FGRM), and pedigree-based coefficient (FPED). Results The average number of ROH per animal was 55.15 ± 13.01 with an average size of 3.24 Mb. The Nellore genome is composed mostly by a high number of shorter segments accounting for 78% of all ROH, although the proportion of the genome covered by them was relatively small. The genome autozygosity proportion indicates moderate to high inbreeding levels for classical standards, with an average value of 7.15% (178.70 Mb). The average of FPED and FROH, and their correlations (− 0.05 to 0.26) were low. Estimates of correlation between FGRM-FPED was zero, while the correlation (− 0.01 to − 0.07) between FGRM-FROH decreased as a function of ROH length, except for FROH > 8Mb (− 0.03). Overall, inbreeding coefficients were not high for the genotyped animals. Autozygosity islands were evident across the genome (n = 62) and their genomic location did not largely differ within lineages. Enriched terms (p < 0.01) associated with defense response to bacteria (GO:0042742), immune complex reaction (GO:0045647), pr... Mostrar Tudo |
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Palavras-Chave: |
Padroes ROH. |
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Thesagro: |
Endogamia; Gado Nelore; Genética Animal; Genoma. |
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Thesaurus Nal: |
Homozygosity. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/188276/1/12864-2018-Article-5060-APAGAR.pdf
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Marc: |
LEADER 03204naa a2200397 a 4500
001 2101339
005 2018-12-12
008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://dx.doi.org/10.1186%2Fs12864-018-5060-8$2DOI
100 1 $aPERIPOLLI, E.
245 $aAutozygosity islands and ROH patterns in Nellore lineages$bevidence of selection for functionally important traits.$h[electronic resource]
260 $c2018
520 $aAbstract Background The aim of this study was to assess genome-wide autozygosity in a Nellore cattle population and to characterize ROH patterns and autozygosity islands that may have occurred due to selection within its lineages. It attempts also to compare estimates of inbreeding calculated from ROH (FROH), genomic relationship matrix (FGRM), and pedigree-based coefficient (FPED). Results The average number of ROH per animal was 55.15 ± 13.01 with an average size of 3.24 Mb. The Nellore genome is composed mostly by a high number of shorter segments accounting for 78% of all ROH, although the proportion of the genome covered by them was relatively small. The genome autozygosity proportion indicates moderate to high inbreeding levels for classical standards, with an average value of 7.15% (178.70 Mb). The average of FPED and FROH, and their correlations (− 0.05 to 0.26) were low. Estimates of correlation between FGRM-FPED was zero, while the correlation (− 0.01 to − 0.07) between FGRM-FROH decreased as a function of ROH length, except for FROH > 8Mb (− 0.03). Overall, inbreeding coefficients were not high for the genotyped animals. Autozygosity islands were evident across the genome (n = 62) and their genomic location did not largely differ within lineages. Enriched terms (p < 0.01) associated with defense response to bacteria (GO:0042742), immune complex reaction (GO:0045647), pregnancy-associated glycoproteins genes (GO:0030163), and organism growth (GO:0040014) were described within the autozygotic islands. Conclusions Low FPED-FROH correlation estimates indicate that FPED is not the most suitable method for capturing ancient inbreeding when the pedigree does not extend back many generations and FROH should be used instead. Enriched terms (p < 0.01) suggest a strong selection for immune response. Non-overlapping islands within the lineages greatly explain the mechanism underlying selection for functionally important traits in Nellore cattle.
650 $aHomozygosity
650 $aEndogamia
650 $aGado Nelore
650 $aGenética Animal
650 $aGenoma
653 $aPadroes ROH
700 1 $aMETZGER, J.
700 1 $aLEMOS, M. V. A. de
700 1 $aSTAFUZZA, N. B.
700 1 $aKLUSKA, S.
700 1 $aOLIVIERI, B. F.
700 1 $aFEITOSA, F. L. B.
700 1 $aBERTON, M. P.
700 1 $aLOPES, F. B.
700 1 $aMUNARI, D. P.
700 1 $aLOBO, R. B.
700 1 $aMAGNABOSCO, C. de U.
700 1 $aDI CROCE, F.
700 1 $aOSTERSTOCK, J.
700 1 $aDENISE, S.
700 1 $aPEREIRA, A. S. C.
700 1 $aBALDI, F.
773 $tBMC Genomics$gv. 19, 680, 2018.
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Embrapa Cerrados (CPAC) |
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| Registros recuperados : 331 | |
| 121. |  | SILVA, G. R. da; PEREIRA, F. de M.; SOUZA, B. de A.; LOPES, M. T. do R.; DINIZ, F. M. Pesquisas com abelhas-sem-ferrão (Hymenoptera: Meliponini) e aplicabilidade dos marcadores moleculares: uma revisão sistemática da literatura. PUBVET, v. 13, n. 1, a250, p. 1-19, Jan. 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Caprinos e Ovinos; Embrapa Meio-Norte. |
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| 122. | | BARBOSA, F. M.; ALVES, R. M. de O.; SOUZA, B. de A.; CARVALHO, C. A. L. de. Nest architecture of the stingless bee Geotrigona subterranea (Friese,1901) (Hymenoptera: Apidae: Meliponini). Biota Neotropica, Campinas, v. 13, n. 1, p. 147-152, 2013.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 2 |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 124. | | MENESES, D. O.; SILVA, J. I.; D. C. M. TEIXEIRA; PEREIRA, F. M.; LOPES, M. T. R.; SOUZA, B. A. Origem botânica do pólen coletado pela abelha Tiúba (Melipona fasciculata SMITH, 1854) no campo experimental. In: CONGRESSO BRASILEIRO DE APICULTURA, 20.; CONGRESSO BRASILEIRO DE MELIPONICULTURA, 6.; EXPOAPI FEIRA DE NEGÓCIOS, 2014, Belém, PA. Sustentabilidade, tecnologia e mercados: anais. Belém, PA: CBA, 2014. p. 131. CONBRAPI 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 127. | | LIMA, C. B. S.; NUNES, L. A.; CARVALHO, C. A. L.; RIBEIRO, M. F.; SOUZA, B. A. Morphometric differences and fluctuating asymmetry in Melipona subnitida Ducke 1910 (Hymenoptera: Apidae) in different types of housing. Brazilian Journal of Biology, São Carlos, v. 76, n. 4, p. 845-850, 2016. Autoria: MARCIA [i.e. DE] FATIMA RIBEIRO; BRUNO [ i.e. DE] ALMEIDA SOUZA.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 132. | | SOUZA, B. J.; LEITE, J. M.; MORAIS, R. F.; ALVES, B. J. R.; BODDEY, R. M.; URQUIAGA, S. Potássio e outros nutrientes na biomassa de capim elefante (Pennisetum purpureum Schum.) para uso na produção de carvão vegetal. In: SEMANA CIENTÍFICA JOHANNA DÖBEREINER, 7., 2007, Seropédica, RJ. Resumos... Seropédica: Embrapa Agrobiologia, 2007. 1 CD-ROM. Parceria: UFRRJ| Tipo: Resumo em Anais de Congresso | Circulação/Nível: -- - -- |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 133. | | SOUZA, B. J. de; MORAIS, R. F. de; LEITE, J. M.; ALVES, B. J. R.; BODDEY, R. M.; URQUIAGA, S. Potássio e outros nutrientes na biomassa de capim elefante para uso na produção de carvão vegetal. In: CONGRESSO BRASILEIRO DE CIÊNCIA DO SOLO, 31., 2007, Gramado. conquistas e desafios da ciência do solo brasileira. Porto Alegre: Universidade Federal do Rio Grande do Sul, 2007. 4 p. 1 CD-ROM. Parceria: UFRRJ| Tipo: Artigo em Anais de Congresso / Nota Técnica | Circulação/Nível: -- - -- |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 134. | | CARVALHO, C. A. L.; SODRÉ, G. S.; FONSECA, A. A. O.; ALVES, R. M. O.; SOUZA, B. A.; CLARTON, L. Physicochemical characteristics and sensory profile of honey samples from stingless bees (Apidae: Meliponinae) submitted to a dehumidification process. Anais da Academia Brasileira de Ciências, v. 81, n. 1, p. 143-149, 2009.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 135. | | GOMIDE, C. A. M.; PACIULLO, D. S. C.; COSTA, I. A.; SOUZA, B. P.; PEREIRA, A. V.; MARTINS, C. E. Produção de forragem e estrutura do dossel em dois clones de capim-elefante anão sob diferentes manejos. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA. 45., 2008, Lavras, MG. Anais... Viçosa, MG: Sociedade Brasileira de Zootecnia, 2008.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 139. | | ANUNCIAÇÃO, J. dos R. da; NASCIMENTO, F. da S. do; DIAS, E. de A.; SOUZA, B. B.; SANTOS, C. A. C. dos; COELHO FILHO, M. A. Atividade: ação do ácido giberélico na emergência de plântulas de citros. In: REUNIÃO ANUAL DE CIÊNCIA, TECNOLOGIA, INOVAÇÃO E CULTURA NO RECÔNCAVO DA BAHIA - RECONCITEC, 4. 2017, Cruz das Almas. Educação, desenvolvimento e integração Social: anais.... Cruz das Almas, Universidade Federal do Recôncavo da Bahia, 2017. 1 p.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 140. | | SOUZA, B. B.; SANTOS, C. A. C. dos; DIAS, E. de A.; NASCIMENTO, F. da S. do; COELHO FILHO, M. A. Atividade: ação da cinetina, ácido indolbutírico e Ácido giberélico no crescimento inicial de limoeiro "cravo". In: REUNIÃO ANUAL DE CIÊNCIA, TECNOLOGIA, INOVAÇÃO E CULTURA NO RECÔNCAVO DA BAHIA - RECONCITEC, 4. 2017, Cruz das Almas. Educação, desenvolvimento e integração Social: anais.... Cruz das Almas, Universidade Federal do Recôncavo da Bahia, 2017. 1 p.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 331 | |
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