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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
18/11/2020 |
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Data da última atualização: |
18/11/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
SANTOS, F. C.; ROSA, S. D. V. F. da; GROTEWOLD, E.; PADILHA, L. |
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Afiliação: |
The Ohio State University; STTELA DELLYZETE VEIGA F DA ROSA, CNPCa; The Ohio State University; LILIAN PADILHA, CNPCa. |
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Título: |
Differential expression in Coffea arabica seeds during the processing and drying. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
In: INTERNATIONAL CONFERENCE ON COFFEE SCIENCE, 25., 2014, Armenia. Leveraging knowledge for coffee sustainability: proceedings. Armenia: Association for Science and Information on Coffee, 2014. p. 274-275. |
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Idioma: |
Português |
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Conteúdo: |
Coffee is one of the most important agricultural products in the world market. The mode of coffee processing, whether wet or dry, determines the characteristic flavor and also the seed quality. In recent years, high-throughput RNA-sequencing (RNA-Seq) has emerged as a powerful and cost-efficient tool for transcriptome analysis. RNA-Seq has proven useful for the detection of gene expression, the discovery of novel transcripts, and the identification of differentially expressed genes. In this study, we applied Illumina sequencing technology and the Heat Map analysis for differential expression. Coffee seeds were processed by three different methods, dry, semi-dry or wet, and were dried under shade or dryer conditions. The samples were used to prepare a cDNA library for sequence analysis via Illumina (HiSeq 2000). After removal of low-quality reads, a total of 125,829,579 high-quality 50 bp reads were identified. As can be seen in the Heat Map graphic representation, semi-dry/dryer methods are separated from wet/dyer methods, with high differential expression. This representation indicates they have much differential expression in different metabolic pathways. However, semi-dry/shade and wet/shade have similar differential expression. These results provide information on how the processing and drying methods influences gene expression, and suggest that that more detailed analyzes in metabolic pathway studies are required. |
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Thesagro: |
Coffea Arábica; Processamento; Secagem; Semente. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/217958/1/PB241.pdf
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Marc: |
LEADER 02166nam a2200193 a 4500
001 2126780
005 2020-11-18
008 2014 bl uuuu u00u1 u #d
100 1 $aSANTOS, F. C.
245 $aDifferential expression in Coffea arabica seeds during the processing and drying.$h[electronic resource]
260 $aIn: INTERNATIONAL CONFERENCE ON COFFEE SCIENCE, 25., 2014, Armenia. Leveraging knowledge for coffee sustainability: proceedings. Armenia: Association for Science and Information on Coffee, 2014. p. 274-275.$c2014
520 $aCoffee is one of the most important agricultural products in the world market. The mode of coffee processing, whether wet or dry, determines the characteristic flavor and also the seed quality. In recent years, high-throughput RNA-sequencing (RNA-Seq) has emerged as a powerful and cost-efficient tool for transcriptome analysis. RNA-Seq has proven useful for the detection of gene expression, the discovery of novel transcripts, and the identification of differentially expressed genes. In this study, we applied Illumina sequencing technology and the Heat Map analysis for differential expression. Coffee seeds were processed by three different methods, dry, semi-dry or wet, and were dried under shade or dryer conditions. The samples were used to prepare a cDNA library for sequence analysis via Illumina (HiSeq 2000). After removal of low-quality reads, a total of 125,829,579 high-quality 50 bp reads were identified. As can be seen in the Heat Map graphic representation, semi-dry/dryer methods are separated from wet/dyer methods, with high differential expression. This representation indicates they have much differential expression in different metabolic pathways. However, semi-dry/shade and wet/shade have similar differential expression. These results provide information on how the processing and drying methods influences gene expression, and suggest that that more detailed analyzes in metabolic pathway studies are required.
650 $aCoffea Arábica
650 $aProcessamento
650 $aSecagem
650 $aSemente
700 1 $aROSA, S. D. V. F. da
700 1 $aGROTEWOLD, E.
700 1 $aPADILHA, L.
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Registro original: |
Embrapa Café (CNPCa) |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
02/09/2009 |
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Data da última atualização: |
01/07/2019 |
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Autoria: |
BERGAMIN, A. C.; VITORINO, A. C. T.; FRANCHINI, J. C.; SOUZA, C. M. A. de; SOUZA, F. R. de; CONUS, L. A. |
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Afiliação: |
ANDRESON CRISTIAN BERGAMIN, Universidade Federal da Grande Dourados; ANTONIO CARLOS TADEU VITORINO, Universidade Federal da Grande Dourados; JULIO CEZAR FRANCHINI DOS SANTOS, CNPSo; CRISTIANO MÁRCIO ALVEZ DE SOUZA, Universidade Federal da Grande Dourados; FÁBIO RÉGIS DE SOUZA, Universidade Federal da Grande Dourados; LENITA APARECIDA CONUS, Universidade Federal da Grande Dourados. |
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Título: |
Compactação de um Latossolo Vermelho Distroférrico induzida pelo tráfego de trator e sua relação com o sistema radicular do milho. |
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Ano de publicação: |
2009 |
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Fonte/Imprenta: |
In: CONGRESSO BRASILEIRO DE CIÊNCIA DO SOLO, 32., 2009, Fortaleza. O solo e a produção de bioenergia: perspectivas e desafios: resumos. [Viçosa, MG]: SBCS; Fortaleza: UFC, 2009. p. 354. Ref.: PT1677. |
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Idioma: |
Português |
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Palavras-Chave: |
Compactação do solo causada pelo tráfego de máquina agrícola. |
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Thesagro: |
Anatomia vegetal; Compactação do solo; Física do solo; Milho; Plantio direto. |
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Thesaurus NAL: |
Corn; No-tillage; Plant anatomy; Soil compaction; Soil physics. |
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Categoria do assunto: |
P Recursos Naturais, Ciências Ambientais e da Terra |
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Marc: |
LEADER 01089naa a2200301 a 4500
001 1471405
005 2019-07-01
008 2009 bl --- 0-- u #d
100 1 $aBERGAMIN, A. C.
245 $aCompactação de um Latossolo Vermelho Distroférrico induzida pelo tráfego de trator e sua relação com o sistema radicular do milho.
260 $c2009
650 $aCorn
650 $aNo-tillage
650 $aPlant anatomy
650 $aSoil compaction
650 $aSoil physics
650 $aAnatomia vegetal
650 $aCompactação do solo
650 $aFísica do solo
650 $aMilho
650 $aPlantio direto
653 $aCompactação do solo causada pelo tráfego de máquina agrícola
700 1 $aVITORINO, A. C. T.
700 1 $aFRANCHINI, J. C.
700 1 $aSOUZA, C. M. A. de
700 1 $aSOUZA, F. R. de
700 1 $aCONUS, L. A.
773 $tIn: CONGRESSO BRASILEIRO DE CIÊNCIA DO SOLO, 32., 2009, Fortaleza. O solo e a produção de bioenergia: perspectivas e desafios: resumos. [Viçosa, MG]: SBCS; Fortaleza: UFC, 2009. p. 354. Ref.: PT1677.
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Embrapa Soja (CNPSO) |
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