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Registro Completo |
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Biblioteca(s): |
Embrapa Agrobiologia. |
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Data corrente: |
13/11/2017 |
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Data da última atualização: |
08/05/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SILVA, P. R. A.; ARAUJO, J. L. S. de; VIDAL, M. S.; CRUZ, L. M.; SOUZA, E. M. de; BALDANI, J. I. |
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Afiliação: |
PAULA RENATA ALVES DA SILVA, UFRRJ; JEAN LUIZ SIMOES DE ARAUJO, CNPAB; MARCIA SOARES VIDAL, CNPAB; LEONARDO MAGALHÃES CRUZ, UFPR; EMANUEL MALTEMPI DE SOUZA, UFPR; JOSE IVO BALDANI, CNPAB. |
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Título: |
Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Brazilian Journal of Microbiology, v. 49, n. 2, p. 2010-2011, Apr./Jun. 2018. |
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DOI: |
https://doi.org/10.1016/j.bjm.2017.07.005 |
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Idioma: |
Inglês |
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Conteúdo: |
Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. |
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Palavras-Chave: |
Diazotrophic; Next generation sequencing; Nitrogen fixing; Secretion system. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/176513/1/JEAN-IVO-MARCIA-Draft-genome.pdf
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Marc: |
LEADER 01634naa a2200241 a 4500
001 2079611
005 2018-05-08
008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1016/j.bjm.2017.07.005$2DOI
100 1 $aSILVA, P. R. A.
245 $aDraft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium.$h[electronic resource]
260 $c2018
520 $aParaburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association.
653 $aDiazotrophic
653 $aNext generation sequencing
653 $aNitrogen fixing
653 $aSecretion system
700 1 $aARAUJO, J. L. S. de
700 1 $aVIDAL, M. S.
700 1 $aCRUZ, L. M.
700 1 $aSOUZA, E. M. de
700 1 $aBALDANI, J. I.
773 $tBrazilian Journal of Microbiology$gv. 49, n. 2, p. 2010-2011, Apr./Jun. 2018.
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Registro original: |
Embrapa Agrobiologia (CNPAB) |
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Biblioteca |
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Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
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Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
17/02/2009 |
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Data da última atualização: |
26/10/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
Internacional - A |
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Autoria: |
ALMEIDA, A. M. R.; BINNECK, E.; PIUGA, F. F.; MARIN, S. R. R.; VALLE, P. R. Z. R. do; SILVEIRA, C. A. |
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Afiliação: |
Álvaro Manoel Rodrigues de Almeida, CNPSo; Eliseu Binneck, CNPSo; Fernanda F. Piuga, UNOPAR; Silvana Regina Rockenbach Marin, CNPSo; Paula R.Z. Ribeiro do Valle, UEL; Cesar A. Silveira, CNPSo. |
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Título: |
Characterization of powdery mildews strains from soybean, bean, sunflower, and weeds in Brazil using rDNA-ITS sequences. |
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Ano de publicação: |
2008 |
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Fonte/Imprenta: |
Tropical Plant Pathology, Brasília, DF, v. 33, n. 1, p. 20-26. jan./fev. 2008. |
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Idioma: |
Inglês |
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Conteúdo: |
Soybean powdery mildew (Erysiphe diffusa) was considered a minor disease in Brazil in the decades immediately after its identification. However, since the outbreak in 1996/97 in all cultivated areas the disease has become a constant threat to farmers and losses of up to 25% have been reported. The report of a new species, E. glycines, infecting soybean in Japan, and the occurrence of the disease in other plant species (Phaseolus vulgaris, Helianthus annuus,Sonchus oleraceus,Hypochaeris brasiliensis, and Bidens pilosa) commonly found growing nearby soybean fields, raised questions in relation to the taxonomy of the powdery mildew strains found in or around soybean fields in Brazil. Analysis of the internal transcribed sequence (ITS) of the rDNA was undertaken to ascertain the pathogen species associated to each of the hosts. Powdery mildew strains isolated from Glycine max were identified as E. diffusa. Strains from P. vulgaris were very similar to E. diffusa, with 4 nt differences, and differed from Erysiphe poligony by 11 nt. Strains from H. annuus and S. oleraceus grouped with the species Golovinomyces cichoracearum, while strains from H. brasiliensis and B. pilosa were similar to Podosphaera fusca and Neoerysiphe cumminsiana, respectively. To our knowledge this is the first molecular identification of powdery mildew in Brazil based on rDNA sequence comparison. In addition, this study presented evidence for the occurrence of N. cumminsiana in America. |
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Palavras-Chave: |
Sunflower. |
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Thesagro: |
Feijão; Girassol; Soja. |
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Thesaurus NAL: |
Beans; Soybeans. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/42997/1/28865.pdf
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Marc: |
LEADER 02229naa a2200253 a 4500
001 1471156
005 2023-10-26
008 2008 bl uuuu u00u1 u #d
100 1 $aALMEIDA, A. M. R.
245 $aCharacterization of powdery mildews strains from soybean, bean, sunflower, and weeds in Brazil using rDNA-ITS sequences.$h[electronic resource]
260 $c2008
520 $aSoybean powdery mildew (Erysiphe diffusa) was considered a minor disease in Brazil in the decades immediately after its identification. However, since the outbreak in 1996/97 in all cultivated areas the disease has become a constant threat to farmers and losses of up to 25% have been reported. The report of a new species, E. glycines, infecting soybean in Japan, and the occurrence of the disease in other plant species (Phaseolus vulgaris, Helianthus annuus,Sonchus oleraceus,Hypochaeris brasiliensis, and Bidens pilosa) commonly found growing nearby soybean fields, raised questions in relation to the taxonomy of the powdery mildew strains found in or around soybean fields in Brazil. Analysis of the internal transcribed sequence (ITS) of the rDNA was undertaken to ascertain the pathogen species associated to each of the hosts. Powdery mildew strains isolated from Glycine max were identified as E. diffusa. Strains from P. vulgaris were very similar to E. diffusa, with 4 nt differences, and differed from Erysiphe poligony by 11 nt. Strains from H. annuus and S. oleraceus grouped with the species Golovinomyces cichoracearum, while strains from H. brasiliensis and B. pilosa were similar to Podosphaera fusca and Neoerysiphe cumminsiana, respectively. To our knowledge this is the first molecular identification of powdery mildew in Brazil based on rDNA sequence comparison. In addition, this study presented evidence for the occurrence of N. cumminsiana in America.
650 $aBeans
650 $aSoybeans
650 $aFeijão
650 $aGirassol
650 $aSoja
653 $aSunflower
700 1 $aBINNECK, E.
700 1 $aPIUGA, F. F.
700 1 $aMARIN, S. R. R.
700 1 $aVALLE, P. R. Z. R. do
700 1 $aSILVEIRA, C. A.
773 $tTropical Plant Pathology, Brasília, DF$gv. 33, n. 1, p. 20-26. jan./fev. 2008.
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Embrapa Soja (CNPSO) |
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