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| Registros recuperados : 28 | |
| 8. |  | HELDWEIN, A. B.; NIED, A. H.; SAGGIN, S. L.; BURIOL, G. A.; SCHNEIDER, M. Evaporação d'água em estufas plásticas e sua relação com o ambiente externo: 2- efeito da espécie cultivada e da época do ano nos valores obtidos com minitanques. Revista Brasileira de Agrometeorologia, Santa Maria, v.9, n.1, p. 43-49, 2001.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 10. | | DE BRUIJN, F. J.; HILGERT, U.; STIGTER, J.; SCHNEIDER, M.; MEYER, H.; KLOSSE, U.; PAWLOWSKI, K. Regulation of nitrogen fixation and assimilation genes in the freeliving versus symbiotic state. In: Nitrogen Fixation: Achievements and Objectives, v., p.33-44, 1990.| Biblioteca(s): Embrapa Agrobiologia. |
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| 12. | | SCHNEIDER, M. P.; BOCK, F. C.; GUERRA, C. C.; SILVA, L. L.; FERRÃO, M. F.; GOMES, A. A. Geographical traceability of South Brazilian red wines through fused spectroscopic data. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE QUÍMICA, 42., 2019, Joinville. Anais...Eixos Mobilizadores em Química. Joinville, SC: SBQ, 27 a 30 maio 2019. ANA-041.| Biblioteca(s): Embrapa Uva e Vinho. |
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| 14. | | SCHNEIDER, P. R.; FINGER, C. A. G.; FLEIG, F. D.; FLEI, M. J.; STORCK, L.; HOPPE, J. M.; SCHNEIDER, M. V.; GATTO, A. Crescimento inicial do Eucalyptus dunnii Maiden consorciado com zea mays L., na região de Santa Maria-RS. Ciência Florestal, Santa Maria, v. 5, n. 1, p. 171-182, nov. 1995.| Biblioteca(s): Embrapa Florestas. |
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| 15. | | SANTIAN, M.; SCHNEIDER, M. L.; STOCKMANN, I. de S.; DALLA COSTA, F. A.; DALLA COSTA, O. A.; COLDEBELLA, A.; OLIVEIRA, S. E. O. Comportamento de suínos durante o uso de nebulização nas baias de período de descanso. In: JORNADA DE INICIAÇÃO CIENTÍFICA, 10., 2016, Concórdia. Anais... Concórdia: Embrapa Suínos e Aves: UNC, 2017. p. 123-124. JINC.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 16. | | MATSCHULLAT, J.; LIMA, R. M. B. de; FROMM, S. F. von; MARTINS, G. C.; SCHNEIDER, M.; MATHIS, A.; RAMOS, A. M.; PLESSOW, A.; KIBLER, K. Sustainable land-use alternatives in tropical rainforests? Evidence from natural and social sciences. European Geologist, v. 52, p. 5-20, Nov. 2021.| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 17. | | MATSCHULLAT, J.; MARTINS, G. C.; ENZWEILER, J.; FROMM, S. F. von; LEEUWEN, J. van; LIMA, R. M. B. de; SCHNEIDER, M.; ZURBA, K. What influences upland soil chemistry in the Amazon basin, Brazil? Major, minor and trace elements in the upper rhizosphere. Journal of Geochemical Exploration, v. 211, art. 106433, April 2020.| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 18. | | GRAÇAS, D. A.; JESUS, E. C.; FILHO, L. C. F.; JUNIOR, R. G.; BARBOSA, M. S.; RAMOS, R. T. J.; LEÃO, T. F.; BARAÚNA, R. A.; SCHNEIDER, M. P.; SILVA, A. Changes in microbial communities along a water column in an Amazonian flooded area Aquatic Science and Technology, v: 1, n. 1, 2013| Biblioteca(s): Embrapa Agrobiologia. |
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| 19. | | VINCIGUERRA, L. L.; BÖCK, F. C.; SCHNEIDER, M. P.; REIS, N. A. P. C.; SILVA, L. F. da; SOUZA, K. C. M de; GUERRA, C. C.; GOMES, A. de A.; BERGOLD, A. M.; FERRÂO, M. F. Geographical origin authentication of southern Brazilian red wines by means of EEM-pH four-way data modelling coupled with one class classification approach. Food Chemistry, v. 362, n. 130087, 2021.| Biblioteca(s): Embrapa Uva e Vinho. |
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| 20. | | BARBOSA, M. S. R.; COSTA, S. S.; MARCON, D. J.; GRAÇAS, D. A. das; RAMOS, R. T. J.; SCHNEIDER, M. P. C.; CUNHA, E. F. M.; BARAÚNA, R. A.; SILVA, A. L. da C. da. Transcriptomic insights on fruit ripening of two varieties of Amazon açaí palm (Euterpe oleracea Mart.). In: BRAZILIAN CONGRESS OF GENETICS, 68., 2023, Ouro Preto. Paleogenomics: sequencing ancient DNA. Ribeirão Preto: Sociedade Brasileira de Genética, 2023. p. 417. E-book.| Biblioteca(s): Embrapa Amazônia Oriental. |
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| Registros recuperados : 28 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
21/11/2012 |
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Data da última atualização: |
14/04/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 5 |
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Autoria: |
D'AFONSECA, V.; SOARES, S. C.; ALI, A.; SANTOS, A. R.; PINTO, A. C.; MAGALHÃES, A. A. C.; FARIA, C. de J.; BARBOSA, E.; GUIMARÃES, L. C.; ESLABÃO, M.; ALMEIDA, S. S.; ABREU, V. A. C.; ZERLOTINI, A.; CARNEIRO, A. R.; CERDEIRA, L. T.; RAMOS, R. T. J.; HIRATA JÚNIOR, R.; MATTOS-GUARALDI, A. L.; TROST, E.; TAUCH, A.; SILVA, A.; SCHNEIDER, M. P.; MIYOSHI, A.; AZEVEDO, V. |
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Afiliação: |
VÍVIAN D’AFONSECA, UFMG; SIOMAR C. SOARES, UFMG; AMJAD ALI, UFMG; ANDERSON R. SANTOS, UFMG; ANNE C. PINTO, UFMG; ARYANE A. C. MAGALHÃES, UFMG; CÁSSIO DE JESUS FARIA, UFMG; EUDES BARBOSA, UFMG; LUIS C. GUIMARÃES, UFMG; MARCUS ESLABÃO, UFPel; SINTIA S. ALMEIDA, UFMG; VINICIUS A. C. ABREU, UFMG; ADHEMAR ZERLOTINI NETO, CNPTIA; ADRIANA R. CARNEIRO, UFPA; LOUISE T. CERDEIRA, UFPA; ROMMEL T. J. RAMOS, UFPA; RAPHAEL HIRATA JÚNIOR, UERJ; ANA L. MATTOS-GUARALDI, UERJ; EVA TROST, Bielefeld University; ANDREAS TAUCH, Bielefeld University; ARTUR SILVA, UFPA; MARIA P. SCHNEIDER, UFPA; ANDERSON MIYOSHI, UFMG; VASCO AZEVEDO, UFMG. |
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Título: |
Reannotation of the Corynebacterium diphtheriae NCTC13129 genome as a new approach to studying gene targets connected to virulence and pathogenicity in diphtheria. |
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Ano de publicação: |
2012 |
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Fonte/Imprenta: |
Open Access Bioinformatics, v. 4, p. 1-13, 2012. |
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Idioma: |
Inglês |
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Conteúdo: |
Background: The reannotation of genomes already on file is a new approach to discovering new genetic elements and to make the genomes more descriptive and current with relevant features regarding the organism?s lifestyle. Within this approach, the present study aimed to reannotate the genome of the Gram-positive human pathogen Corynebacterium diphtheriae, which causes diphtheria. The deposit of massive amounts of information linked to other species of the genus Corynebacterium has facilitated the updating of the genomic interpretation of this microorganism. Additionally, the emergence of invasive disease by nontoxigenic strains of C. diphtheriae and the reemergence of diphtheria in partially immunized populations have given impetus to new studies in relation to its structural and functional genome. Results: In relation to structural genomics, 23 coding regions (coding sequences) were deleted and 71 new genes were added to the genome annotation. Nevertheless, all the pseudogenes were validated and ten new pseudogenes were created. In relation to functional genomics, about 57% of the genome annotation was updated and became functionally more informative. The product descriptions of 41% (973 proteins) were updated. Among them, 370 that were previously annotated as ?hypothetical proteins,? now have more informative descriptions. With the new annotation, the plasticity of the genome became evident, which shows improvements in the annotation of 13 pathogenicity islands already described in the literature. In addition, the large number of transposases and the presence of structural genes of bacteriophages make their genomic versatility evident. Contrasting with this reality, it also allowed the clarification of some aspects concerned with mechanisms used by C. diphtheriae to stop the invasion of the genome by bacteriophages, mediated by the clustered regularly interspaced short palindromic repeats region. Conclusion: The reannotation of the C. diphtheriae genome provided an improvement in annotation of the C. diphtheriae genome in several aspects, such as virulence characteristics and plasticity events. Moreover, the protocol used here can be extended to various other pathogens in order to improve the genomic information already on file in public databases and to minimize propagating errors. The reannotated archive and updated archive are available at: http://lgcm.icb.ufmg.br/pub/C_diphtheriae_reannotation.embl. MenosBackground: The reannotation of genomes already on file is a new approach to discovering new genetic elements and to make the genomes more descriptive and current with relevant features regarding the organism?s lifestyle. Within this approach, the present study aimed to reannotate the genome of the Gram-positive human pathogen Corynebacterium diphtheriae, which causes diphtheria. The deposit of massive amounts of information linked to other species of the genus Corynebacterium has facilitated the updating of the genomic interpretation of this microorganism. Additionally, the emergence of invasive disease by nontoxigenic strains of C. diphtheriae and the reemergence of diphtheria in partially immunized populations have given impetus to new studies in relation to its structural and functional genome. Results: In relation to structural genomics, 23 coding regions (coding sequences) were deleted and 71 new genes were added to the genome annotation. Nevertheless, all the pseudogenes were validated and ten new pseudogenes were created. In relation to functional genomics, about 57% of the genome annotation was updated and became functionally more informative. The product descriptions of 41% (973 proteins) were updated. Among them, 370 that were previously annotated as ?hypothetical proteins,? now have more informative descriptions. With the new annotation, the plasticity of the genome became evident, which shows improvements in the annotation of 13 pathogenicity islands already des... Mostrar Tudo |
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Palavras-Chave: |
Bioinformática. |
|
Thesagro: |
Genoma; Patogenicidade. |
|
Thesaurus NAL: |
Bioinformatics; Corynebacterium diphtheriae; Genome; Pathogenicity islands. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/70533/1/OAB-25500-re-annotation-of-the-corynebacterium-diphtheriae-nctc13129-g-022412.pdf
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|
Marc: |
LEADER 03832naa a2200481 a 4500
001 1940203
005 2020-04-14
008 2012 bl uuuu u00u1 u #d
100 1 $aD'AFONSECA, V.
245 $aReannotation of the Corynebacterium diphtheriae NCTC13129 genome as a new approach to studying gene targets connected to virulence and pathogenicity in diphtheria.$h[electronic resource]
260 $c2012
520 $aBackground: The reannotation of genomes already on file is a new approach to discovering new genetic elements and to make the genomes more descriptive and current with relevant features regarding the organism?s lifestyle. Within this approach, the present study aimed to reannotate the genome of the Gram-positive human pathogen Corynebacterium diphtheriae, which causes diphtheria. The deposit of massive amounts of information linked to other species of the genus Corynebacterium has facilitated the updating of the genomic interpretation of this microorganism. Additionally, the emergence of invasive disease by nontoxigenic strains of C. diphtheriae and the reemergence of diphtheria in partially immunized populations have given impetus to new studies in relation to its structural and functional genome. Results: In relation to structural genomics, 23 coding regions (coding sequences) were deleted and 71 new genes were added to the genome annotation. Nevertheless, all the pseudogenes were validated and ten new pseudogenes were created. In relation to functional genomics, about 57% of the genome annotation was updated and became functionally more informative. The product descriptions of 41% (973 proteins) were updated. Among them, 370 that were previously annotated as ?hypothetical proteins,? now have more informative descriptions. With the new annotation, the plasticity of the genome became evident, which shows improvements in the annotation of 13 pathogenicity islands already described in the literature. In addition, the large number of transposases and the presence of structural genes of bacteriophages make their genomic versatility evident. Contrasting with this reality, it also allowed the clarification of some aspects concerned with mechanisms used by C. diphtheriae to stop the invasion of the genome by bacteriophages, mediated by the clustered regularly interspaced short palindromic repeats region. Conclusion: The reannotation of the C. diphtheriae genome provided an improvement in annotation of the C. diphtheriae genome in several aspects, such as virulence characteristics and plasticity events. Moreover, the protocol used here can be extended to various other pathogens in order to improve the genomic information already on file in public databases and to minimize propagating errors. The reannotated archive and updated archive are available at: http://lgcm.icb.ufmg.br/pub/C_diphtheriae_reannotation.embl.
650 $aBioinformatics
650 $aCorynebacterium diphtheriae
650 $aGenome
650 $aPathogenicity islands
650 $aGenoma
650 $aPatogenicidade
653 $aBioinformática
700 1 $aSOARES, S. C.
700 1 $aALI, A.
700 1 $aSANTOS, A. R.
700 1 $aPINTO, A. C.
700 1 $aMAGALHÃES, A. A. C.
700 1 $aFARIA, C. de J.
700 1 $aBARBOSA, E.
700 1 $aGUIMARÃES, L. C.
700 1 $aESLABÃO, M.
700 1 $aALMEIDA, S. S.
700 1 $aABREU, V. A. C.
700 1 $aZERLOTINI, A.
700 1 $aCARNEIRO, A. R.
700 1 $aCERDEIRA, L. T.
700 1 $aRAMOS, R. T. J.
700 1 $aHIRATA JÚNIOR, R.
700 1 $aMATTOS-GUARALDI, A. L.
700 1 $aTROST, E.
700 1 $aTAUCH, A.
700 1 $aSILVA, A.
700 1 $aSCHNEIDER, M. P.
700 1 $aMIYOSHI, A.
700 1 $aAZEVEDO, V.
773 $tOpen Access Bioinformatics$gv. 4, p. 1-13, 2012.
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Embrapa Agricultura Digital (CNPTIA) |
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