| |
|
|
| Registros recuperados : 23 | |
| 2. |  | PICCOLI, M. L.; BRACINNI NETO, J.; CARDOSO, F. F.; SARGOLZAEI, M.; SCHENKEL, F. S. Accuracy of genotype imputation with different low density panels in Braford and Hereford cattle. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. 1 CD-ROM.| Biblioteca(s): Embrapa Pecuária Sul. |
|    |
| 5. | | BUZANSKAS, M. E.; GROSSI, D. A.; REGITANO, L. C. de A.; SCHENKEL, F. S.; ALENCAR, M. M. de; MUNARI, D. P. Associações genômicas para perímetro escrotal ao desmame em bovinos da raça Canchim. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 10., 2013, Uberaba. Anais... Belo Horizonte: SBMA, 2013. 3 p.| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 6. | | GROSSI, D. A.; GRUPIONI, N. V.; BUZANSKAS, M. E.; SCHENKEL, F. S.; REGITANO, L. C. de A.; PAZ, C. C. P.; ALENCAR, M. M. de; MUNARI, D. Association of polymorphisms in the IGF1, GH and PIT1 genes with growth and reproductive traits in Canchim cattle In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 9., 2010, Leipzig. Proceedings... Leipzig: German Society fo Animal Science, 2010. 1 CD-ROM| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 7. | | CHUD, T. C. S.; VENTURA, R. V.; SCHENKEL. F. S.; URBINATI, I.; CARVALHEIRO, R.; REGITANO, L. C. de A.; MARCONDES, C. R.; MINARI, D. P. Accuracy of genotype imputation in Canchim cattle using FImpute and Beagle software., In: INTERNATIONAL SYMPOSIUM ON ANIMAL FUNCTIONAL GENOMICS, 5., 2013, Guarujá. Abstract... Guarujá:[ s.n.], 2013. AB.20.| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 8. | | BUZANSKAS, M. E.; VENTURA, R. V.; REGITANO, L. C. de A.; SCHENKEL, F. S.; ALENCAR, M. M. de; MUNARI, D. P. Estudo de associações genômicas para idade ao primeiro e segundo parto em bovinos da raça Canchim. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 10., 2013, Uberaba. Anais... Belo Horizonte: SBMA, 2013. 3 p.| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 9. | | PICCOLI, M. L.; BRITO, L. F.; BRACCINI, J.; BRITO, F. V.; CARDOSO, F. F.; COBUCI, J. A.; SARGOLZAEI, M.; SCHENKEL, F. S. A comprehensive comparison between single- and two-step GBLUP methods in a simulated beef cattle population. Canadian Journal of Animal Science, v. 98, n. 3, p. 565-575, Sept. 2018.| Biblioteca(s): Embrapa Pecuária Sul. |
|  |
| 10. | | CRUZ, V. A. R. da; IBELLI, A. M. G.; SAVEGNAGO, R. P.; NASCIMENTO, G. B.; SARGOLZAEI, M.; SCHENKEL. F. S.; LEDUR, M. C.; PEIXOTO, J. de O.; MUNARI, D. P. Association of the adiponectin receptor 1 gene with bone integrity traits in a paternal broiler line. In: REUNIÃO ANNUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 51, 2014, Barra dos Coqueiros. Anais ... Barra dos Coqueiros: SBZ, 2014. 1 CD-ROM.| Biblioteca(s): Embrapa Suínos e Aves. |
| |
| 11. | | CRUZ, V. A. R. da; SCHENKEL, F. S.; SAVEGNAGO, R. P.; GRUPIONI, N. V.; STAFUZZA, N. B.; SARGOZAEL, M.; IBELLI, A. M. G.; PEIXOTO, J. de O.; LEDUR, M. C.; MUNARI, D. P. Association of apolipoprotein B and adiponectin receptor 1 genes with carcass, bone integrity and performance traits in a paternal broiler Line. Plos One, v. 10, n.8, 2015.| Biblioteca(s): Embrapa Suínos e Aves. |
| |
| 12. | | GROSSI, D. do; GRUPIONI, N. V.; BUZANSKAS, M. E.; PAZ, C. C. P. de; REGITANO, L. C. de A.; ALENCAR, M. M. de; SCHENKEL, F. S.; MUNARI, D. P. Allele substitution effects of IGF1, GH and PIT1 markers on estimated breeding values for weight and reproduction traits in Canchim beef cattle. Livestock Science, v. 180, p. 78-83, oct. 2015.| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 13. | | GROSSI, D. do A.; BUZANSKAS, M. E.; GRUPIONI, N. V.; PAZ, C. C. P. de; REGITANO, L. C. de A.; ALENCAR, M. M. de; SCHENKEL, F. S.; MUNARI, S. P. Effect of IGF1, GH, and PIT1 markers on the genetic parameters of growth and reproduction traits in Canchim cattle. Molecular Biology Report, v. 42, n. 1, p. 245-251, jan. 2014.| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 14. | | BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; CHUD, T. C. S.; URBINATI, I.; MEIRELLES, S. L. C.; MOKRY, F. B.; SCHENKEL, F. S.; REGITANO, L. C. de A.; MUNARI, D. P. Genome-wide association study on long-yearling scrotal circumference in Canchim cattle. In:WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings...Vancouver: WCGALP: Amarican Society of Animal Science, 2014.| Biblioteca(s): Embrapa Pecuária Sudeste. |
| |
| 15. | | CHUD, T. C. S.; VENTURA, R. V.; SCHENKEL, F. S.; CARVALHEIRO, R.; BUZANSKAS, M. E.; ROSA, J. O.; MUDADU, M. de A.; SILVA, M. V. G. B.; MARCONDES, C. R.; REGITANO, L. C. de A.; MUNARI, D. P. Strategies for genotype imputation in composite beef cattle BMC Genetics, v. 16, p. 99, 2015. 10 p.| Biblioteca(s): Embrapa Gado de Leite. |
| |
| 16. | | BUZANSKAS, M. E.; VENTURA, R. V.; CHUD, T. C. S.; SANTOS, D. J. A.; BERNARDES, P. A.; SILVA, T. B. R.; MUDADU, M. A.; REGITANO, L. C. A.; SILVA, M. V. G. B.; LI, C.; SCHENKEL, F. S.; ALENCAR, M. M.; MUNARI, D. P. Admixture analysis in Brazillian synthetic cattle. In: ADSA ASAS JOINT ANNUAL MEETING, 2015, Orlando. Proceedings... Orlando: ADSA: ASAS, 2015.| Biblioteca(s): Embrapa Gado de Leite. |
| |
| 17. | | NEVES, H. H.; CARVALHEIRO, R.; O'BRIEN, A. M.; UTSUNOMIYA, Y. T.; CARMO, A. S. do; SCHENKEL, F. S.; SÖLKNER, J.; MCEWAN, J. C.; VAN TASSELL, C. P.; COLE, J. B.; SILVA, M. V. G. B.; QUEIROZ, S. A.; SONSTEGARD, T. S.; GARCIA, J. F. Accuracy of genomic predictions in Bos indicus (Nellore) cattle. Genetics Selection Evolution, v. 46, article 17, 2014.| Biblioteca(s): Embrapa Gado de Leite. |
| |
| 18. | | MOKRY, F. B.; BUZANSKAS, M. E.; MUDADU, M. de A.; GROSSI, D. do A.; HIGA, R. H.; VENTURA, R. V.; LIMA, A. O. de; SARGOLZAEI, M.; MEIRELLES, S. L. C.; SCHENKEL, F. S.; SILVA, M. V. G. B.; NICIURA, S. C. M.; ALENCAR, M. M. de; MINARI, D. P.; REGITANO, L. C. de A. Linkage disequilibrium and haplotype block structure in a composite beef cattle breed. BMC Genomics, London v. 15, S6, p. 1-9, 2014. Suppl 7.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
| |
| 19. | | BUZANSKAS, M. E.; GROSSI, D. A.; VENTURA, R. V.; SCHENKEL, F. S.; SARGOLZAEI, M.; MEIRELLES, S. L. C. O; MOKRY, F. B.; HIGA, R. H.; MUDADU, M. de A.; SILVA, M. V. G. B.; NICIURA, S. C. M.; TORRES JUNIOR, R. A. de A.; ALENCAR, M. M. de; REGITANO, L. C. de A.; MUNARI, D. P. Genome-wide association for growth traits in Canchim beef cattle. Plos One, v. 9, n. 4, e94802 2014.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
| |
| 20. | | UTSUNOMIYA, Y. T.; CARMO, A. S. do; CARVALHEIRO, R.; NEVES, H. H. R.; MATOS, M. C.; ZAVAREZ, L. B.; O'BRIEN, A. M. P.; SÖLKNER, J.; McEWAN, J. C.; COLE, J. B.; TASSEL, C. P. V.; SCHENKEL, F. S.; SILVA, M. V. G. B.; PORTO NETO, L. R.; SONSTEGARD, T. S.; GARCIA, J. F. Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height. BMC Genetics, London, v. 14, article 52, 2013.| Biblioteca(s): Embrapa Gado de Leite. |
| |
| Registros recuperados : 23 | |
|
|
|
Registro Completo
|
Biblioteca(s): |
Embrapa Pecuária Sudeste. |
|
Data corrente: |
26/11/2015 |
|
Data da última atualização: |
15/03/2023 |
|
Tipo da produção científica: |
Artigo em Periódico Indexado |
|
Circulação/Nível: |
A - 1 |
|
Autoria: |
CHUD, T. C. S.; VENTURA, R. V.; SCHENKEL, F. S.; CARVALHEIRO, R.; BUZANSKAS, M. E.; ROSA, J. O.; MUDADU, M. de A.; SILVA, M. V. G. B.; MOKRY, F. B.; MARCONDES, C. R.; REGITANO, L. C. de A.; MUNARI, D. P. |
|
Afiliação: |
TATIANE C. S. CHUD, UNESP; RICARDO V. VENTURA, UNESP; FLAVIO S. SCHENKEL, University of Guelph; ROBERTO CARVALHEIRO, UNESP; MARCOS E. BUZANSKAS, UNESP; JAQUELINE O. ROSA, UNESP; MAURICIO DE ALVARENGA MUDADU, CPPSE; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; FABIANA B. MOKRY, Federal University of São Carlos; CINTIA RIGHETTI MARCONDES, CPPSE; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; DANÍSIO P. MUNARI, UNESP. |
|
Título: |
Strategies for genotype imputation in composite beef cattle. |
|
Ano de publicação: |
2015 |
|
Fonte/Imprenta: |
BMC Genomics, v. 16, n. 99, 2015. |
|
Páginas: |
10 p. |
|
DOI: |
10.1186/s12863-015-0251-7 |
|
Idioma: |
Inglês |
|
Conteúdo: |
Genotype imputation has been used to increase genomic information, allow more animals in genome-wide analyses, and reduce genotyping costs. In Brazilian beef cattle production, many animals are resulting from crossbreeding and such an event may alter linkage disequilibrium patterns. Thus, the challenge is to obtain accurately imputed genotypes in crossbred animals. The objective of this study was to evaluate the best fitting and most accurate imputation strategy on the MA genetic group (the progeny of a Charolais sire mated with crossbred Canchim X Zebu cows) and Canchim cattle. The data set contained 400 animals (born between 1999 and 2005) genotyped with the Illumina BovineHD panel. Imputation accuracy of genotypes from the Illumina-Bovine3K (3K), Illumina-BovineLD (6K), GeneSeek-Genomic-Profiler (GGP) BeefLD (GGP9K), GGP-IndicusLD (GGP20Ki), Illumina-BovineSNP50 (50K), GGP-IndicusHD (GGP75Ki), and GGP-BeefHD (GGP80K) to Illumina-BovineHD (HD) SNP panels were investigated. Seven scenarios for reference and target populations were tested; the animals were grouped according with birth year (S1), genetic groups (S2 and S3), genetic groups and birth year (S4 and S5), gender (S6), and gender and birth year (S7). Analyses were performed using FImpute and BEAGLE software and computation run-time was recorded. Genotype imputation accuracy was measured by concordance rate (CR) and allelic R square (R2). |
|
Palavras-Chave: |
Canchim breed; Crossbred cattle; Genomic data; Low density panel. |
|
Thesaurus NAL: |
single nucleotide polymorphism. |
|
Categoria do assunto: |
G Melhoramento Genético |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/134135/1/regitano4.pdf
|
|
Marc: |
LEADER 02356naa a2200337 a 4500
001 2029694
005 2023-03-15
008 2015 bl uuuu u00u1 u #d
024 7 $a10.1186/s12863-015-0251-7$2DOI
100 1 $aCHUD, T. C. S.
245 $aStrategies for genotype imputation in composite beef cattle.$h[electronic resource]
260 $c2015
300 $a10 p.
520 $aGenotype imputation has been used to increase genomic information, allow more animals in genome-wide analyses, and reduce genotyping costs. In Brazilian beef cattle production, many animals are resulting from crossbreeding and such an event may alter linkage disequilibrium patterns. Thus, the challenge is to obtain accurately imputed genotypes in crossbred animals. The objective of this study was to evaluate the best fitting and most accurate imputation strategy on the MA genetic group (the progeny of a Charolais sire mated with crossbred Canchim X Zebu cows) and Canchim cattle. The data set contained 400 animals (born between 1999 and 2005) genotyped with the Illumina BovineHD panel. Imputation accuracy of genotypes from the Illumina-Bovine3K (3K), Illumina-BovineLD (6K), GeneSeek-Genomic-Profiler (GGP) BeefLD (GGP9K), GGP-IndicusLD (GGP20Ki), Illumina-BovineSNP50 (50K), GGP-IndicusHD (GGP75Ki), and GGP-BeefHD (GGP80K) to Illumina-BovineHD (HD) SNP panels were investigated. Seven scenarios for reference and target populations were tested; the animals were grouped according with birth year (S1), genetic groups (S2 and S3), genetic groups and birth year (S4 and S5), gender (S6), and gender and birth year (S7). Analyses were performed using FImpute and BEAGLE software and computation run-time was recorded. Genotype imputation accuracy was measured by concordance rate (CR) and allelic R square (R2).
650 $asingle nucleotide polymorphism
653 $aCanchim breed
653 $aCrossbred cattle
653 $aGenomic data
653 $aLow density panel
700 1 $aVENTURA, R. V.
700 1 $aSCHENKEL, F. S.
700 1 $aCARVALHEIRO, R.
700 1 $aBUZANSKAS, M. E.
700 1 $aROSA, J. O.
700 1 $aMUDADU, M. de A.
700 1 $aSILVA, M. V. G. B.
700 1 $aMOKRY, F. B.
700 1 $aMARCONDES, C. R.
700 1 $aREGITANO, L. C. de A.
700 1 $aMUNARI, D. P.
773 $tBMC Genomics$gv. 16, n. 99, 2015.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
