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Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
25/04/2006 |
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Data da última atualização: |
27/02/2024 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
CRUZ, S. A. B. da; MAZONI, I.; OLIVEIRA, S. R. de M.; YAMAGISHI, M. E. B.; FALCAO, P. R. K.; SANTOS, E. H. dos; VIEIRA, F. D.; HIGA, R. H.; MANCINI, A. L.; NESHICH, G. |
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Afiliação: |
SERGIO APARECIDO BRAGA DA CRUZ, CNPTIA; IVAN MAZONI, CNPTIA; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; PAULA REGINA KUSER FALCAO, CNPTIA; EDGARD HENRIQUE DOS SANTOS, CNPTIA; FABIO DANILO VIEIRA, CNPTIA; ROBERTO HIROSHI HIGA, CNPTIA; ADAUTO LUIZ MANCINI, CNPTIA; GORAN NESIC, CNPTIA. |
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Título: |
JMOL and STING integration: a STING for multiple patforms. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. |
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Páginas: |
p. 86. |
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Idioma: |
Inglês |
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Notas: |
Na publicação: Stanley R. M. Oliveira, Paula R. Kuser, Edgard H. Santos. X-meeting 2005. Presented Posters. |
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Conteúdo: |
STING and JavaProtein Dossier (JPD) are web-based tools for supporting of complex interplay for protein sequence/structure/function analysis [2,3]. The JPD provides a visualization tool for a collection of the physicochemical parameters describing proteins and it is integrated with STING Suite molecular sequence/structure viewer, which is based on the Chime® plugin [4] for 3D molecular visualization. This integration allows atoms identification in a 3D molecular visualization from JPD selected parameters. Until now this integration has presented some drawbacks, such as: it is not a Java-based solution, so this integration involves a module communication by browser environment, reducing its performance. The CHIME® plugin is only available for Windows platform disallowing a visualization by Mac and Unix-like users. In order to solve these relevant issues, a new platform independent solution was searched in order to provide a 3D molecular visualization for STING. The selected tool was JMOL [1] which adopts a CHIME compatible script language, and is Java-base solution that is independent of specialized Java libraries for 3D rendering or any type of hardware acceleration. The replacement of CHIME by JMOL was accomplished and meets all the requirements described above. Apart from that, the new solution supports an easier bi-directional communication between STING and JPD tools, allowing a structural selection of JPD parameters by spatial criteria on a 3D molecular visualization. The JMOL requires a few requirements to be installed and allowing users from different platforms (e.g., Mac, Windows, Unix) to access the STING and JPD tools. MenosSTING and JavaProtein Dossier (JPD) are web-based tools for supporting of complex interplay for protein sequence/structure/function analysis [2,3]. The JPD provides a visualization tool for a collection of the physicochemical parameters describing proteins and it is integrated with STING Suite molecular sequence/structure viewer, which is based on the Chime® plugin [4] for 3D molecular visualization. This integration allows atoms identification in a 3D molecular visualization from JPD selected parameters. Until now this integration has presented some drawbacks, such as: it is not a Java-based solution, so this integration involves a module communication by browser environment, reducing its performance. The CHIME® plugin is only available for Windows platform disallowing a visualization by Mac and Unix-like users. In order to solve these relevant issues, a new platform independent solution was searched in order to provide a 3D molecular visualization for STING. The selected tool was JMOL [1] which adopts a CHIME compatible script language, and is Java-base solution that is independent of specialized Java libraries for 3D rendering or any type of hardware acceleration. The replacement of CHIME by JMOL was accomplished and meets all the requirements described above. Apart from that, the new solution supports an easier bi-directional communication between STING and JPD tools, allowing a structural selection of JPD parameters by spatial criteria on a 3D molecular visualization. T... Mostrar Tudo |
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Palavras-Chave: |
JMOL; STING. |
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Thesagro: |
Integração. |
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Categoria do assunto: |
-- |
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Marc: |
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300 $ap. 86.
500 $aNa publicação: Stanley R. M. Oliveira, Paula R. Kuser, Edgard H. Santos. X-meeting 2005. Presented Posters.
520 $aSTING and JavaProtein Dossier (JPD) are web-based tools for supporting of complex interplay for protein sequence/structure/function analysis [2,3]. The JPD provides a visualization tool for a collection of the physicochemical parameters describing proteins and it is integrated with STING Suite molecular sequence/structure viewer, which is based on the Chime® plugin [4] for 3D molecular visualization. This integration allows atoms identification in a 3D molecular visualization from JPD selected parameters. Until now this integration has presented some drawbacks, such as: it is not a Java-based solution, so this integration involves a module communication by browser environment, reducing its performance. The CHIME® plugin is only available for Windows platform disallowing a visualization by Mac and Unix-like users. In order to solve these relevant issues, a new platform independent solution was searched in order to provide a 3D molecular visualization for STING. The selected tool was JMOL [1] which adopts a CHIME compatible script language, and is Java-base solution that is independent of specialized Java libraries for 3D rendering or any type of hardware acceleration. The replacement of CHIME by JMOL was accomplished and meets all the requirements described above. Apart from that, the new solution supports an easier bi-directional communication between STING and JPD tools, allowing a structural selection of JPD parameters by spatial criteria on a 3D molecular visualization. The JMOL requires a few requirements to be installed and allowing users from different platforms (e.g., Mac, Windows, Unix) to access the STING and JPD tools.
650 $aIntegração
653 $aJMOL
653 $aSTING
700 1 $aMAZONI, I.
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700 1 $aYAMAGISHI, M. E. B.
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700 1 $aVIEIRA, F. D.
700 1 $aHIGA, R. H.
700 1 $aMANCINI, A. L.
700 1 $aNESHICH, G.
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