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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Meio Ambiente. |
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Data corrente: |
20/04/2006 |
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Data da última atualização: |
31/08/2015 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
JESUS, K. R. E. de; FALCAO, P. R. K.; NESHICH, G. |
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Afiliação: |
KATIA REGINA EVARISTO DE JESUS, CNPMA; PAULA REGINA KUSER FALCAO, CNPTIA; GORAN NESHICH, CNPTIA. |
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Título: |
Structural analyses of CRY 1Ac protein from Bacillus thuringiensis. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
In: X-MEETING INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu/MG. Presented posters. Caxambu/MG: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 133. |
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Idioma: |
Inglês
Português |
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Conteúdo: |
Cry protein is a delta endotoxin of the Bacillus family that provides an entomopatogenic activity to Bacilius thuringiensis. These proteins have a specific toxic activity against three types of insect larva: Lepdopthera, Diptera and Coleopthera. The insecticidal toxins are produced during spore formation. When an insect ingests these proteins they are activated by proteolytic cleavage. The toxin, after the ingestion, is solubitized by the alcalin pH in the digestive tract of the target insect. Once activated the endotoxin binds to the gut epithelium and causes cell lysis leading to death. These proteins are the active agents used in the majority of biorational pesticides and insect-resistant transgenic crops. This activated region of the delta endotoxin is composed of three structural domains. Domain I is involved in membrane insertion, pore formation and toxicity. The second and third domains are involved in receptor binding and specifically domain III is important in insect specificity. There are around 120 sequences of Cry toxins, and only five structures were deposited on the Protein Data Bank (PDB). There is a large interest in the toxin Cry 1Ac because it is commonly used to create transgenic plants with insect resistance. A theoretical model of the Cry lAc toxin was obtained on the basis of the coordinates of the insecticidal protein Cry lAa (PDB code:lciy.pdb) [1] as a template. The high sequence identity (73%) and a good correlation coefficient obtained from the elctron density server [2] indicates that 1ciy structure could be used as a template. The model corresponds to residues 33-618 of the primary structure and consists of domains I, II and III. The sequence of domain I is highly conserved, while domain II and III have the lower sequence similarity. The 3D model was construct using Modeller v7.7 [3]. Aimed at verifying whether the amino acid differences in domains II and III could be responsible for insect specifícity, this two structures were structurally aligned and compared with the Sting protein structure analysis program. Knowing that each amino acid substitution could potentially affect the protein structure and function, these amino acids were mapped and evaluated according to: conservation, change in solvent accessibility, side-chain volume change, effect on amino-acid interactions, protein electrostatics, and physicochemical properties of amino acids. Such approach can open a new insight into understanding of specificity that Cry protein has for receptors in plant pests and can help in the design of mutagenesis experiments aimed to elucidate the mechanism of action of the CrylAc toxin. MenosCry protein is a delta endotoxin of the Bacillus family that provides an entomopatogenic activity to Bacilius thuringiensis. These proteins have a specific toxic activity against three types of insect larva: Lepdopthera, Diptera and Coleopthera. The insecticidal toxins are produced during spore formation. When an insect ingests these proteins they are activated by proteolytic cleavage. The toxin, after the ingestion, is solubitized by the alcalin pH in the digestive tract of the target insect. Once activated the endotoxin binds to the gut epithelium and causes cell lysis leading to death. These proteins are the active agents used in the majority of biorational pesticides and insect-resistant transgenic crops. This activated region of the delta endotoxin is composed of three structural domains. Domain I is involved in membrane insertion, pore formation and toxicity. The second and third domains are involved in receptor binding and specifically domain III is important in insect specificity. There are around 120 sequences of Cry toxins, and only five structures were deposited on the Protein Data Bank (PDB). There is a large interest in the toxin Cry 1Ac because it is commonly used to create transgenic plants with insect resistance. A theoretical model of the Cry lAc toxin was obtained on the basis of the coordinates of the insecticidal protein Cry lAa (PDB code:lciy.pdb) [1] as a template. The high sequence identity (73%) and a good correlation coefficient obtained from the elc... Mostrar Tudo |
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Palavras-Chave: |
Bioinformática. |
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Thesagro: |
Bacillus thuringiensis; Proteina. |
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Thesaurus Nal: |
Bioinformatics; Proteins. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/127545/1/2005RA-078.pdf
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Marc: |
LEADER 03359nam a2200193 a 4500
001 2021515
005 2015-08-31
008 2005 bl uuuu u00u1 u #d
100 1 $aJESUS, K. R. E. de
245 $aStructural analyses of CRY 1Ac protein from Bacillus thuringiensis.$h[electronic resource]
260 $aIn: X-MEETING INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu/MG. Presented posters. Caxambu/MG: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 133.$c2005
520 $aCry protein is a delta endotoxin of the Bacillus family that provides an entomopatogenic activity to Bacilius thuringiensis. These proteins have a specific toxic activity against three types of insect larva: Lepdopthera, Diptera and Coleopthera. The insecticidal toxins are produced during spore formation. When an insect ingests these proteins they are activated by proteolytic cleavage. The toxin, after the ingestion, is solubitized by the alcalin pH in the digestive tract of the target insect. Once activated the endotoxin binds to the gut epithelium and causes cell lysis leading to death. These proteins are the active agents used in the majority of biorational pesticides and insect-resistant transgenic crops. This activated region of the delta endotoxin is composed of three structural domains. Domain I is involved in membrane insertion, pore formation and toxicity. The second and third domains are involved in receptor binding and specifically domain III is important in insect specificity. There are around 120 sequences of Cry toxins, and only five structures were deposited on the Protein Data Bank (PDB). There is a large interest in the toxin Cry 1Ac because it is commonly used to create transgenic plants with insect resistance. A theoretical model of the Cry lAc toxin was obtained on the basis of the coordinates of the insecticidal protein Cry lAa (PDB code:lciy.pdb) [1] as a template. The high sequence identity (73%) and a good correlation coefficient obtained from the elctron density server [2] indicates that 1ciy structure could be used as a template. The model corresponds to residues 33-618 of the primary structure and consists of domains I, II and III. The sequence of domain I is highly conserved, while domain II and III have the lower sequence similarity. The 3D model was construct using Modeller v7.7 [3]. Aimed at verifying whether the amino acid differences in domains II and III could be responsible for insect specifícity, this two structures were structurally aligned and compared with the Sting protein structure analysis program. Knowing that each amino acid substitution could potentially affect the protein structure and function, these amino acids were mapped and evaluated according to: conservation, change in solvent accessibility, side-chain volume change, effect on amino-acid interactions, protein electrostatics, and physicochemical properties of amino acids. Such approach can open a new insight into understanding of specificity that Cry protein has for receptors in plant pests and can help in the design of mutagenesis experiments aimed to elucidate the mechanism of action of the CrylAc toxin.
650 $aBioinformatics
650 $aProteins
650 $aBacillus thuringiensis
650 $aProteina
653 $aBioinformática
700 1 $aFALCAO, P. R. K.
700 1 $aNESHICH, G.
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Registro original: |
Embrapa Meio Ambiente (CNPMA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Florestas. |
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Data corrente: |
21/12/2022 |
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Data da última atualização: |
21/12/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 2 |
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Autoria: |
OLIVEIRA, J. P. de; SANTOS, A. T. dos; MATTOS, P. P. de; CANETTI, A.; BRAZ, E. M. |
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Afiliação: |
JANAÍNA PAGLIARINI DE OLIVEIRA, ESCOLA SUPERA, CAXIAS DO SUL, RS; ANDREIA TABORDA DOS SANTOS; PATRICIA POVOA DE MATTOS, CNPF; ALINE CANETTI; EVALDO MUNOZ BRAZ, CNPF. |
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Título: |
Competição espacial e crescimento de Ocotea odorifera (Vell.) Rohwer em remanescente de Floresta Ombrófila Mista. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Nativa, Sinop, v. 10, n. 4, p. 458-465, 2022. |
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DOI: |
DOI: https://doi.org/10.31413/nativa.v10i4.12086 |
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Idioma: |
Português |
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Conteúdo: |
O objetivo desse estudo foi avaliar o ciclo de vida e a competição de Ocotea odorifera (Vell.) Rohwer em Floresta Ombrófila Mista. Foram selecionadas árvores do sub-bosque e emergentes na Floresta Nacional de Chapecó, SC. Foram mensurados o diâmetro, projeção de copa e altura total de cada árvore amostrada. Foram obtidas amostras com trado de incremento e analisados os anéis de crescimento, para determinação do crescimento em diâmetro. Foram calculados índices de competição e ajustados modelos hipsométricos e de crescimento para cada classe de altura (< 11 m e ≥ 11 m). Os indivíduos apresentaram idade entre 47 e 220 anos, em diâmetros de 17 a 90 cm a 1,30 m de altura (DAP). A espécie é longeva, com incremento médio de 0,42 cm ano-1. O incremento médio anual difere entre classes de altura e diâmetro, sendo menor para os indivíduos que estão sob o dossel. O índice de Glover e Hool refletiu tal condição, indicando que as árvores com menor diâmetro estão sob maior pressão de competição. A análise dos índices de competição e dos modelos de crescimento permite estabelecer um prognóstico do crescimento das árvores de O. odorifera, servindo de subsídio ao planejamento do manejo para uso comercial e/ou conservação. Palavras-chave: manejo florestal; anéis de crescimento; índice de competição. |
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Palavras-Chave: |
Anéis de crescimento; Floresta Ombrófila Mista; Índice de competição; Ocotea odorifera. |
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Thesagro: |
Manejo. |
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Categoria do assunto: |
K Ciência Florestal e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150148/1/12086-Texto-do-Artigo-62797-1-10-20221122.pdf
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Marc: |
LEADER 02141naa a2200241 a 4500
001 2150148
005 2022-12-21
008 2022 bl uuuu u00u1 u #d
024 7 $aDOI: https://doi.org/10.31413/nativa.v10i4.12086$2DOI
100 1 $aOLIVEIRA, J. P. de
245 $aCompetição espacial e crescimento de Ocotea odorifera (Vell.) Rohwer em remanescente de Floresta Ombrófila Mista.$h[electronic resource]
260 $c2022
520 $aO objetivo desse estudo foi avaliar o ciclo de vida e a competição de Ocotea odorifera (Vell.) Rohwer em Floresta Ombrófila Mista. Foram selecionadas árvores do sub-bosque e emergentes na Floresta Nacional de Chapecó, SC. Foram mensurados o diâmetro, projeção de copa e altura total de cada árvore amostrada. Foram obtidas amostras com trado de incremento e analisados os anéis de crescimento, para determinação do crescimento em diâmetro. Foram calculados índices de competição e ajustados modelos hipsométricos e de crescimento para cada classe de altura (< 11 m e ≥ 11 m). Os indivíduos apresentaram idade entre 47 e 220 anos, em diâmetros de 17 a 90 cm a 1,30 m de altura (DAP). A espécie é longeva, com incremento médio de 0,42 cm ano-1. O incremento médio anual difere entre classes de altura e diâmetro, sendo menor para os indivíduos que estão sob o dossel. O índice de Glover e Hool refletiu tal condição, indicando que as árvores com menor diâmetro estão sob maior pressão de competição. A análise dos índices de competição e dos modelos de crescimento permite estabelecer um prognóstico do crescimento das árvores de O. odorifera, servindo de subsídio ao planejamento do manejo para uso comercial e/ou conservação. Palavras-chave: manejo florestal; anéis de crescimento; índice de competição.
650 $aManejo
653 $aAnéis de crescimento
653 $aFloresta Ombrófila Mista
653 $aÍndice de competição
653 $aOcotea odorifera
700 1 $aSANTOS, A. T. dos
700 1 $aMATTOS, P. P. de
700 1 $aCANETTI, A.
700 1 $aBRAZ, E. M.
773 $tNativa, Sinop$gv. 10, n. 4, p. 458-465, 2022.
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Embrapa Florestas (CNPF) |
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