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| Registros recuperados : 105 | |
| 2. |  | MARTINAZZO, R.; BAMBERG, A. L.; SILVEIRA, C. A. P. Desenvolvimento de produto: experiências da embrapa clima temperado. In: CONGRESSO BRASILEIRO DE ROCHAGEM, 3., 2017, Pelotas. Anais... Assis: Triunfal Gráfica e Editora, 2017. 455 p. Editado por Adilson Luis Banberg, Carlos Augusto Posser Silveira, Éder de Souza Martins, Magda Bergmann, Rosane Martinazzo e Suzi Huff Theodoro. p. 403-413| Biblioteca(s): Embrapa Clima Temperado. |
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| 3. | | SILVEIRA, C. A. P.; MESSIAS, R. da S.; BAMBERG, A. L.; MARTINAZZO, R.; BERGMANN, M. Algumas questões relativas a avaliação da eficiência agronômica, segurança ambiental, qualidade dos alimentos e normatização para o uso de agrominerais na agricultura. In: SIMPÓSIO SULBRASILEIRO DE GEOLOGIA: Geologia Sustentável, Geologia Para a Sociedade. FIERGS, Porto Alegre, 2013.| Biblioteca(s): Embrapa Clima Temperado. |
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| 4. | | RIBEIRO, P. L.; BAMBERG, A. L.; OLIVEIRA, A. C. B. de; REIS, D. A.; MARTINAZZO, R. Atributos físicos de um planossolo cultivado com soja sob plantio direto e preparo convencional, In: REUNIÃO DE PESQUISA DA SOJA DA REGIÃO SUL, 40., Pelotas, 2014. Atas e Resumos. Pelotas: Embrapa Clima Temperado, 2014. 473 p.| Biblioteca(s): Embrapa Clima Temperado. |
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| 6. | | KLEEMANN, N.; TORRES, D. P.; RIBEIRO, A. S.; BAMBERG, A. L. Cold finger with semi closed reflux system for sample preparation aiming at Al, Ca, Cr, Cu, Fe, K, Mg, Mn, Ni, V and Zn determination in Drinking Water Treatment Sludge by MIP OES. Analytica Chimica Acta, v. 1096, p. 9-17, Feb. 2020.| Biblioteca(s): Embrapa Clima Temperado. |
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| 7. | | BERGMANN, M.; SILVEIRA, C. A. P.; BAMBERG, A. L.; MARTINAZZO, R.; GRECCO, M. F. Considerações sobre o potencial de uso agronômico das rochas vulcânicas da Formação Serra Geral da Bacia do Paraná. In: HARTMANN, L.A.; SILVA, J; T. DA; DONATO, M.. (Org.). Tecnologia e Inovação em Gemas, Jóias e Mineração. Porto Alegre: UFRGS, 2014, p. 119-126.| Biblioteca(s): Embrapa Clima Temperado. |
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| 8. | | TUCHTENHAGEN, I. K.; LIMA, C. L. R. de; BAMBERG, A. L.; BROD, T. L. Metodologia de avaliação visual aplicada a um Planossolo sob diferentes agroecossistemas Cadernos de Agroecologia, v. 13, n. 1, 2018. ANAIS CONGRESSO LATINO-AMERICANO DE AGROECOLOGIA, 6.; CONGRESSO BRASILEIRO DE AGROECOLOGIA, 10.; SEMINÁRIO DE AGROECOLOGIA DO DISTRITO FEDERAL E ENTORNO, 5., 2017, Brasília, DF. Agroecologia na transformação dos sistemas agroalimentares...| Biblioteca(s): Embrapa Clima Temperado. |
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| 13. | | BERGMANN, M.; SIMAS, M. W.; SILVEIRA, C. A. P.; MARTINAZZO, R.; BAMBERG, A. L.; GRECCO, M. Espécies de zeolitas nas diversas ambiências dos basaltos amigdalóides da Formação Serra Geral no Rio Grande do Sul. SIMPÓSIO SUL-BRASILEIRO DE GEOLOGIA, 9.; Workshop dos Recursos Minerais da Região Sul do Brasil, 2015, Florianópolis. Resumos... Florianópilis: SBG, 2015. p. 208.| Biblioteca(s): Embrapa Clima Temperado. |
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| Registros recuperados : 105 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
09/01/2023 |
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Data da última atualização: |
09/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
ARIYOSHI, C.; SANT'ANA, G. C.; FELICIO, M. S.; SERA, G. H.; NOGUEIRA, L. M.; RODRIGUES, L. M. R.; FERREIRA, R. V.; SILVA, B. S. R. da; RESENDE, M. L. V. de; DESTÉFANO, S. A. L.; DOMINGUES, D. S.; PEREIRA, L. F. P. |
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Afiliação: |
CAROLINE ARIYOSHI, UNIVERSIDADE ESTADUAL DE LONDRINA; GUSTAVO CÉSAR SANT'ANA, TROPICAL MELHORAMENTO & GENÉTICA; MARIANE SILVA FELICIO, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; GUSTAVO HIROSHI SERA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; LIVIA MARIA NOGUEIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; LUCAS MATEUS RIVERO RODRIGUES, INSTITUTO AGRONÔMICO; RAFAELLE VECCHIA FERREIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; BRUNA SILVESTRE RODRIGUES DA SILVA, UNIVERSIDADE ESTADUAL DE LONDRINA; MÁRIO LÚCIO VILELA DE RESENDE, UNIVERSIDADE FEDERAL DE LAVRAS; SUZETE APARECIDA LANZA DESTÉFANO, INSTITUTO BIOLÓGICO; DOUGLAS SILVA DOMINGUES, ESCOLA SUPERIOR DE AGRICULTURA LUIZ DE QUEIROZ; LUIZ FILIPE PROTASIO PEREIRA, CNPCa. |
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Título: |
Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Frontiers in Plant Science, v. 13, article 989847, 2022. |
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DOI: |
https://doi.org/10.3389/fpls.2022.989847 |
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Idioma: |
Inglês |
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Conteúdo: |
Bacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history. MenosBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleoti... Mostrar Tudo |
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Thesagro: |
Coffea Arábica. |
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Thesaurus NAL: |
Disease resistance; Genome; Genome-wide association study; Pseudomonas syringae group. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150817/1/Genome-wide-association-study.pdf
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|
Marc: |
LEADER 03197naa a2200325 a 4500
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008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3389/fpls.2022.989847$2DOI
100 1 $aARIYOSHI, C.
245 $aGenome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica.$h[electronic resource]
260 $c2022
520 $aBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history.
650 $aDisease resistance
650 $aGenome
650 $aGenome-wide association study
650 $aPseudomonas syringae group
650 $aCoffea Arábica
700 1 $aSANT'ANA, G. C.
700 1 $aFELICIO, M. S.
700 1 $aSERA, G. H.
700 1 $aNOGUEIRA, L. M.
700 1 $aRODRIGUES, L. M. R.
700 1 $aFERREIRA, R. V.
700 1 $aSILVA, B. S. R. da
700 1 $aRESENDE, M. L. V. de
700 1 $aDESTÉFANO, S. A. L.
700 1 $aDOMINGUES, D. S.
700 1 $aPEREIRA, L. F. P.
773 $tFrontiers in Plant Science$gv. 13, article 989847, 2022.
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