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102. | | PINHEIRO, J. B.; MENDONCA, J. L. de; SILVA, G. O. da; RIBEIRO, C. S. da C.; RODRIGUES, C. da S. Reação de Solanum melongena, Solanum scuticum e Slanum stramonifolium A Meloidogyne enterolobii. In: CONGRESSO BRASILEIRO DE NEMATOLOGIA, 32., 2015, Londrina. Nematologia: problemas emergentes e perspectivas. Anais, programação, palestras, resumos. Londrina: Universidade Estadual de Londrina, 2015. p. 117-118. Resumo 82 Biblioteca(s): Embrapa Hortaliças. |
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103. | | RIBEIRO, C. S. da C.; SOUZA, O. B. de; REIFSCHNEIDER, F. J. B.; GIORDANO, L. de B.; KICH, A. Programa de melhoramento genético de Capsicum da Embrapa Hortaliças visando resistência à murcha-de-fitóftora. Horticultura Brasileira, Brasília, v. 22, n. 2, jul. 2004. Suplemento 2. Trabalho apresentado no 44º Congresso Brasileiro de Olericultura, 2004. Publicado também como resumo em: Horticultura Brasileira, Brasília, v. 22, n. 2, p. 385, jul. 2004. Suplemento 1. Biblioteca(s): Embrapa Hortaliças. |
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104. | | CARVALHO, S. I. C. de; RIBEIRO, C. S. da C.; BIANCHETTI, L. B.; REIFSCHNEIDER, F. J. B. Protection of a new Brazilian habanero pepper cultivar BRS Juriti. In: EUCARPIA CAPSICUM AND EGGPLANT WORKING GROUP MEETING, 16., Kecskemét, 2016. Proceedings of XVI EUCARPIA capsicum and eggplant working meeting in memoriam Dr. Alain Palloix. Budapest: Diamond Congress Ltd., 2016. p. 373-375. Editado por Katalin Ertsey-Peregi, Zsuzsanna Füstös, Gábor Palotás e Gábor Csilléry. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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105. | | CARVALHO, S. I. C. de; RIBEIRO, C. S. da C.; BIANCHETTI, L. B.; REIFSCHNEIDER, F. J. B. Protection of a new Brazilian habanero pepper cultivar BRS Juriti. In: EUCARPIA CAPSICUM AND EGGPLANT WORKING GROUP MEETING, 16., Kecskemét, 2016. Proceedings of XVI EUCARPIA capsicum and eggplant working meeting in memoriam Dr. Alain Palloix. Budapest: Diamond Congress Ltd., 2016. p. 373-375. Editado por Katalin Ertsey-Peregi, Zsuzsanna Füstös, Gábor Palotás e Gábor Csilléry. Biblioteca(s): Embrapa Hortaliças. |
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106. | | RAGASSI, C. F.; ZUCOLOTTO, J.; GOMES, L. M.; RIBEIRO, C. S. da C.; MADEIRA, N. R.; REIFSCHNEIDER, F. J. B. Productivity, quality of fruits and architecture of Jalapeño pepper at different planting densities. Horticultura Brasileira, v. 37, n. 3, p. 331-337, Jul./Sept. 2019. Biblioteca(s): Embrapa Hortaliças. |
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109. | | POZZOBON, M. T.; BIANCHETTI, L. de B.; SANTOS, S. dos; CARVALHO, S. I. C. de; REIFSCHNEIDER, F. J. B.; RIBEIRO, C. S. da C. Comportamento meiótico em acessos de Capsicum chinense Jacq. do Banco de Germoplasma da Embrapa, Brasil. Revista Brasileira de Biociencias, Porto Alegre, v. 13, n. 2, p. 96-100, abr./jun. 2015. Biblioteca(s): Embrapa Hortaliças; Embrapa Recursos Genéticos e Biotecnologia. |
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110. | | MADEIRA, N. R.; AMARO, G. B.; MELO, R. A. de C. e; RIBEIRO, C. S. da C.; REIFSCHNEIDER, F. J. B. Compatibilidade de porta-enxertos para pimentão em cultivo protegido. Horticultura Brasileira, Brasília, DF, v. 34, n. 4, p. 470-474, out./dez. 2016. Biblioteca(s): Embrapa Hortaliças. |
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113. | | MALDONADE, I. R.; FONSECA, R. S. A.; PEREIRA, W. de S.; CARVALHO, S. I. C. de; RIBEIRO, C. S. da C.; SIQUEIRA, A. P. S.; PILON, L. Estudo do efeito da temperatura de armazenamento na qualidade de frutos de pimenta-de-cheiro verde embalados com filme plástico. Brasília, DF: Embrapa Hortaliças, 2021. 26 p. (Embrapa Hortaliças. Boletim de pesquisa e desenvolvimento, 243). Biblioteca(s): Embrapa Hortaliças. |
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114. | | CARNEIRO, C. dos S.; RIBEIRO, C. S. da C.; CARVALHO, S. I. C. de; SOARES, R.; NASS, L. L.; REIFSCHNEIDER, F. J. B. Formação de população base de pimenta do tipo Habanero (Capsicum chinense) e avanço de gerações. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 8., 2015, Goiânia. O melhoramento de plantas, o futuro da agricultura e a soberania nacional: anais. Goiânia: UFG: SBMP, 2015. Resumo. Biblioteca(s): Embrapa Hortaliças. |
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115. | | CARVALHO, S. I. C. de; REIFSCHNEIDER, F. J. B.; RIBEIRO, C. S. da C.; BIANCHETTI, L. de B.; FERNANDEZ, F. L. Experience with descriptors, registration and protection of vegetable cultivars: eggplant as a case study. Horticultura Brasileira, v. 36, n. 2, p. 146-155, 2018. Biblioteca(s): Embrapa Hortaliças; Embrapa Recursos Genéticos e Biotecnologia. |
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116. | | CARVALHO, S. I. C. de; RAGASSI, C. F.; FALEIRO, F. G.; BIANCHETTI, L. de B.; LIMA, M. F.; REIFSCHNEIDER, F. J. B.; RIBEIRO, C. S. da C. Establishment of Capsicum frutescenscore collections based on morphological and molecular descriptors and on virus incidence. Genetics and Molecular Research, v. 19, n. 1, gmr18503, 2020. 19 p. Biblioteca(s): Embrapa Cerrados; Embrapa Hortaliças. |
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117. | | GIORDANO, L. de B.; SANTANA, F. M.; RIBEIRO, C. S. da C.; BEZERRA, I. C.; AVILA, A. C. de; RIBEIRO, S. da G. Geminivirus e tospovirus no Brasil. In: SIMPOSIO DE RECURSOS GENETICOS PARA AMERICA LATINA E CARIBE, 2., 1999, Brasilia, DF. Anais... Brasilia: Embrapa Recursos Geneticos e Biotecnologia, 1999. CD-ROM. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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118. | | GIORDANO, L. B.; SANTANA, F. M.; RIBEIRO, C. S. da C.; BEZERRA, I. C.; AVILA, A. C. de; RIBEIRO, S. da G. Geminivirus e tospovirus no Brasil. In: SIMPOSIO DE RECURSOS GENETICOS PARA AMERICA LATINA E CARIBE, 2., 1999, Brasilia, DF. Anais... Brasilia, EMBRAPA-CENARGEN, 1999. CD-ROM. Resumo. Biblioteca(s): Embrapa Hortaliças. |
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120. | | AGUIAR, A. C. de; PEREIRA, G. A.; RIBEIRO, C. S. da C.; EBERLIN, M. N.; SOARES, L. P.; RUIZ, A. L. T. G.; PASTORE, G. M.; MARTINEZ, J. Capsicum chinense var. BRS Moema: chemical characterization by HPLC-ESI-MS/MS and antiproliferative screening. Food & Function, v. 14, 2023. e6432. Biblioteca(s): Embrapa Hortaliças. |
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Registros recuperados : 162 | |
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Registro Completo
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Hortaliças. |
Data corrente: |
09/08/2022 |
Data da última atualização: |
11/08/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
B - 1 |
Autoria: |
MARTINS, T. P.; REGO, C. M.; NAKASU, E. Y. T.; FERNANDES, F. R.; INOUE-NAGATA, A. K. |
Afiliação: |
T. P. MARTINS, UNIVERSIDADE DE BRASÍLIA; C. M. REGO, UNIVERSIDADE DE BRASÍLIA; ERICH YUKIO TEMPEL NAKASU, CNPH; FERNANDA RAUSCH FERNANDES, CNPTIA; ALICE KAZUKO INOUE NAGATA, CNPH. |
Título: |
A high viral diversity in tomato crops in Brazil is revealed by next generation sequencing analyses. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
Acta Horticulturae, v. 1316, p. 99-105, 2021. |
ISSN: |
2406-6168 |
DOI: |
10.17660/ActaHortic.2021.1316.14 |
Idioma: |
Inglês |
Notas: |
Edition of Proceedings of the VI International Symposium on Tomato Diseases: Managing Tomato Diseases in the Face of Globalization and Climate Change. |
Conteúdo: |
Tomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed and unreported viruses in tomatoes, such as an amalgavirus and an ilarvirus, were also detected and are under confirmation. The conclusion was that there is a high virus diversity present in tomato plants in Brazil, making tomato production a challenge to the growers. The crinivirus, Tomato chlorosis virus, was the most frequently found within the samplings, suggesting that it is widespread in the major tomato production areas. Two begomoviruses were detected, implying that this strategy is also useful to detect viruses with a DNA genome. Finally, this technique was particularly convenient to identify the viruses coexisting in tomatoes and to find unknown viruses that may threaten the tomato production in the country. MenosTomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed a... Mostrar Tudo |
Palavras-Chave: |
HTS; Next Generation Sequencing; Sequenciamento de nova geração; Virome. |
Thesagro: |
Tomate; Vírus. |
Thesaurus NAL: |
Solanum lycopersicum. |
Categoria do assunto: |
-- |
Marc: |
LEADER 03214naa a2200289 a 4500 001 2145363 005 2022-08-11 008 2021 bl uuuu u00u1 u #d 022 $a2406-6168 024 7 $a10.17660/ActaHortic.2021.1316.14$2DOI 100 1 $aMARTINS, T. P. 245 $aA high viral diversity in tomato crops in Brazil is revealed by next generation sequencing analyses.$h[electronic resource] 260 $c2021 500 $aEdition of Proceedings of the VI International Symposium on Tomato Diseases: Managing Tomato Diseases in the Face of Globalization and Climate Change. 520 $aTomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed and unreported viruses in tomatoes, such as an amalgavirus and an ilarvirus, were also detected and are under confirmation. The conclusion was that there is a high virus diversity present in tomato plants in Brazil, making tomato production a challenge to the growers. The crinivirus, Tomato chlorosis virus, was the most frequently found within the samplings, suggesting that it is widespread in the major tomato production areas. Two begomoviruses were detected, implying that this strategy is also useful to detect viruses with a DNA genome. Finally, this technique was particularly convenient to identify the viruses coexisting in tomatoes and to find unknown viruses that may threaten the tomato production in the country. 650 $aSolanum lycopersicum 650 $aTomate 650 $aVírus 653 $aHTS 653 $aNext Generation Sequencing 653 $aSequenciamento de nova geração 653 $aVirome 700 1 $aREGO, C. M. 700 1 $aNAKASU, E. Y. T. 700 1 $aFERNANDES, F. R. 700 1 $aINOUE-NAGATA, A. K. 773 $tActa Horticulturae$gv. 1316, p. 99-105, 2021.
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