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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
25/03/2008 |
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Data da última atualização: |
05/07/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS-MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. |
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Afiliação: |
Magali Lescot, CIRAD/IBSM; Pietro Piffanelli, CIRAD/PADANO; Ana Y. Ciampi, CENARGEN; Manuel Ruiz, CIRAD; Guillaume Blanc, IGS; Jim Leebens-Mack, University of Georgia; Felipe R. da Silva, CENARGEN; Candice M. R. Santos, CENARGEN; Angélique D'Hont, CIRAD; Olivier Garsmeur, CIRAD; Alberto Duarte Vilarinhos, CNPMF; Hiroyuki Kanamori, RGP; Takashi Matsumoto, RGP; Catherine M. Ronning, J. Craig Venter Institute; Foo Cheung, J. Craig Venter Institute; Brian J. Haas, J. Craig Venter Institute; Ryan Althoff, J. Craig Venter Institute; Tammy Arbogast, J. Craig Venter Institute; Erin Hine, J. Craig Venter Institute; Georgios J. Pappas Junior, UCB; Takuji Sasaki, RGP; Manoel T. Souza Junior, CENARGEN; Robert N. G. Miller, UCB; Jean-Christophe Glaszmann, CIRAD; Christopher D. Town, J. Craig Venter Institute. |
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Título: |
Insights into the Musa genome: syntenic relationships to rice and between Musa species. |
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Ano de publicação: |
2007 |
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Fonte/Imprenta: |
BMC Genomics, London, v. 9, 2007. |
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Descrição Física: |
il. |
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ISSN: |
1471-2164 |
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Idioma: |
Inglês |
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Conteúdo: |
Musa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes. MenosMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative a... Mostrar Tudo |
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Palavras-Chave: |
Species. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 03117naa a2200445 a 4500
001 1654851
005 2023-07-05
008 2007 bl uuuu u00u1 u #d
022 $a1471-2164
100 1 $aLESCOT, M.
245 $aInsights into the Musa genome$bsyntenic relationships to rice and between Musa species.$h[electronic resource]
260 $c2007
300 $cil.
520 $aMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes.
653 $aSpecies
700 1 $aPIFFANELLI, P.
700 1 $aCIAMPI, A. Y.
700 1 $aRUIZ, M.
700 1 $aBLANC, G.
700 1 $aLEEBENS-MACK, J.
700 1 $aSILVA, F. R. da
700 1 $aSANTOS, C. M. R.
700 1 $aD'HONT, A.
700 1 $aGARSMEUR, O.
700 1 $aVILARINHOS, A. D.
700 1 $aKANAMORI, H.
700 1 $aMATSUMOTO, T.
700 1 $aRONNING, C. M.
700 1 $aCHEUNG, F.
700 1 $aHAAS, B. J.
700 1 $aALTHOFF, R.
700 1 $aARBOGAST, T.
700 1 $aHIRE, E.
700 1 $aPAPPAS JUNIOR, G.
700 1 $aSASAKI, T.
700 1 $aSOUZA JUNIOR, M. T.
700 1 $aMILLER, R. N. G.
700 1 $aGLASZMANN, J. C.
700 1 $aTOWN, C. D.
773 $tBMC Genomics, London$gv. 9, 2007.
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Embrapa Mandioca e Fruticultura (CNPMF) |
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Biblioteca(s): |
Embrapa Amazônia Oriental. |
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Data corrente: |
14/12/2015 |
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Data da última atualização: |
26/05/2022 |
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Autoria: |
ANDREAE, M. O.; ACEVEDO, O. C.; ARAUJO, A.; ARTAXO, P.; BARBOSA, C. G. G.; BARBOSA, H. M. J.; BRITO, J.; CARBONE, S.; CHI, X.; CINTRA, B. B. L.; SILVA, N. F. da; DIAS, N. L.; DIAS-JÚNIOR, C. Q.; DITAS, F.; DITZ, R.; GODOI, A. F. L.; GODOI, R. H. M.; HEIMANN, M.; HOFFMANN, T.; KESSELMEIER, J.; KÖNEMANN, T.; KRÜGER, M. L.; LAVRIC, J. V.; MANZI, A. O.; MORAN-ZULOAGA, D.; NÖLSCHER, A. C.; NOGUEIRA, D. S.; PIEDADE, M. T. F.; PÖHLKER, C.; PÖSCHL, U.; RIZZO, L. V.; RO, C.-U.; RUCKTESCHLER, N.; SÁ, L. D. A.; SÁ, M. D. O.; SALES, C. B.; SANTOS, R. M. N. dos; SATURNO, J.; SCHÖNGART, J.; SÖRGEL, M.; SOUZA, C. M. de; SOUZA, R. A. F. de; SU, H.; TARGHETTA, N.; TÓTA, J.; TREBS, I.; TRUMBORE, S.; EIJCK, A. van; WALTER, D.; WANG, Z.; WEBER, B.; WILLIAMS, J.; WINDERLICH, J.; WITTMANN, F.; WOLFF, S.; YÁÑEZ-SERRANO, A. M. |
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Afiliação: |
M. O. ANDREAE, Max Planck Institute for Chemistry / University of California San Diego; O. C. ACEVEDO, Universidade Federal Santa Maria; ALESSANDRO CARIOCA DE ARAUJO, CPATU; P. ARTAXO, USP; C. G. G. BARBOSA, UFPR; H. M. J. BARBOSA, USP; J. BRITO, USP; S. CARBONE, USP; X. CHI, Max Planck Institute for Chemistry; B. B. L. CINTRA, INPA; N. F. DA SILVA, INPA; N. L. DIAS, UFPR; C. Q. DIAS-JÚNIOR, IFPA / INPA; F. DITAS, Max Planck Institute for Chemistry; R. DITZ, Max Planck Institute for Chemistry; A. F. L. GODOI, UFPR; R. H. M. GODOI, UFPR; M. HEIMANN, Max Planck Institute for Biogeochemistry; T. HOFFMANN, Johannes Gutenberg University; J. KESSELMEIER, Max Planck Institute for Chemistry; T. KÖNEMANN, Max Planck Institute for Chemistry; M. L. KRÜGER, Max Planck Institute for Chemistry; J. V. LAVRIC, Max Planck Institute for Biogeochemistry; A. O. MANZI, INPA; D. MORAN-ZULOAGA, Max Planck Institute for Chemistry; A. C. NÖLSCHER, Max Planck Institute for Chemistry; D. SANTOS NOGUEIRA, CENSIPAM; M. T. F. PIEDADE, INPA; C. PÖHLKER, Max Planck Institute for Chemistry; U. PÖSCHL, Max Planck Institute for Chemistry; L. V. RIZZO, USP; C.-U. RO, Inha University; N. RUCKTESCHLER, Max Planck Institute for Chemistry; L. D. A. SÁ, INPE; M. D. O. SÁ, INPA; C. B. SALES, INPA / CESP/UEA; R. M. N. D. SANTOS, UEA; J. SATURNO, Max Planck Institute for Chemistry; J. SCHÖNGART, Max Planck Institute for Chemistry / INPA; M. SÖRGEL, Max Planck Institute for Chemistry; C. M. DE SOUZA, INPA / UFAM/ICSEZ-Parintins; R. A. F. DE SOUZA, UEA; H. SU, Max Planck Institute for Chemistry; N. TARGHETTA, INPA; J. TÓTA, UEA / UFOPA; I. TREBS, Max Planck Institute for Chemistry; S. TRUMBORE, Max Planck Institute for Biogeochemistry; A. VAN EIJCK, Johannes Gutenberg University; D. WALTER, Max Planck Institute for Chemistry; Z. WANG, Max Planck Institute for Chemistry; B. WEBER, Max Planck Institute for Chemistry; J. WILLIAMS, Max Planck Institute for Chemistry; J. WINDERLICH, Max Planck Institute for Chemistry / Max Planck Institute for Biogeochemistry; F. WITTMANN, Max Planck Institute for Chemistry; S. WOLFF, Max Planck Institute for Chemistry / INPA; A. M. YÁÑEZ-SERRANO, Max Planck Institute for Chemistry / INPA. |
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Título: |
The Amazon Tall Tower Observatory (ATTO) in the remote Amazon basin: overview of first results from ecosystem ecology, meteorology, trace gas, and aerosol measurements. |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
Atmospheric Chemistry and Physics Discuss, v. 15, n. 18, p. 11599-11726, 2015. |
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DOI: |
10.5194/acpd-15-11599-2015 |
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Idioma: |
Português |
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Conteúdo: |
The Amazon Basin plays key roles in the carbon and water cycles, climate change, atmospheric chemistry, and biodiversity. It already has been changed significantly by human activities, and more pervasive change is expected to occur in the next decades. It is therefore essential to establish long-term measurement sites that provide a baseline record of present-day climatic, biogeochemical, and atmospheric conditions and that will be operated over coming decades to monitor change in the Amazon region as human perturbations increase in the future. The Amazon Tall Tower Observatory (ATTO) has been set up in a pristine rain forest region in the central Amazon Basin, about 150 km northeast of the city of Manaus. An ecological survey including a biodiversity assessment has been conducted in the forest region surrounding the site. Two 80 m towers have been operated at the site since 2012, and a 325 m tower is nearing completion in mid-2015. Measurements of micrometeorological and atmospheric chemical variables were initiated in 2012, and their range has continued to broaden over the last few years. The meteorological and micrometeorological measurements include temperature and wind profiles, precipitation, water and energy fluxes, turbulence components, soil temperature profiles and soil heat fluxes, radiation fluxes, and visibility. A tree has been instrumented to measure stem profiles of temperature, light intensity, and water content in cryptogamic covers. The trace gas measurements comprise continuous monitoring of carbon dioxide, carbon monoxide, methane, and ozone at 5 to 8 different heights, complemented by a variety of additional species measured during intensive campaigns (e.g., VOC, NO, NO2, and OH reactivity). Aerosol optical, microphysical, and chemical measurements are made above the canopy as well as in the canopy space. They include light scattering and absorption, aerosol fluorescence, number and volume size distributions, chemical composition, cloud condensation nuclei (CCN) concentrations, and hygroscopicity. Initial results from ecological, meteorological, and chemical studies at the ATTO site are presented in this paper. MenosThe Amazon Basin plays key roles in the carbon and water cycles, climate change, atmospheric chemistry, and biodiversity. It already has been changed significantly by human activities, and more pervasive change is expected to occur in the next decades. It is therefore essential to establish long-term measurement sites that provide a baseline record of present-day climatic, biogeochemical, and atmospheric conditions and that will be operated over coming decades to monitor change in the Amazon region as human perturbations increase in the future. The Amazon Tall Tower Observatory (ATTO) has been set up in a pristine rain forest region in the central Amazon Basin, about 150 km northeast of the city of Manaus. An ecological survey including a biodiversity assessment has been conducted in the forest region surrounding the site. Two 80 m towers have been operated at the site since 2012, and a 325 m tower is nearing completion in mid-2015. Measurements of micrometeorological and atmospheric chemical variables were initiated in 2012, and their range has continued to broaden over the last few years. The meteorological and micrometeorological measurements include temperature and wind profiles, precipitation, water and energy fluxes, turbulence components, soil temperature profiles and soil heat fluxes, radiation fluxes, and visibility. A tree has been instrumented to measure stem profiles of temperature, light intensity, and water content in cryptogamic covers. The trace gas measureme... Mostrar Tudo |
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Palavras-Chave: |
Monitoramento. |
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Thesagro: |
Clima. |
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Thesaurus NAL: |
Amazonia. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/135576/1/acpdDiscuss.pdf
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Marc: |
LEADER 04427naa a2200829 a 4500
001 2031648
005 2022-05-26
008 2015 bl uuuu u00u1 u #d
024 7 $a10.5194/acpd-15-11599-2015$2DOI
100 1 $aANDREAE, M. O.
245 $aThe Amazon Tall Tower Observatory (ATTO) in the remote Amazon basin$boverview of first results from ecosystem ecology, meteorology, trace gas, and aerosol measurements.$h[electronic resource]
260 $c2015
520 $aThe Amazon Basin plays key roles in the carbon and water cycles, climate change, atmospheric chemistry, and biodiversity. It already has been changed significantly by human activities, and more pervasive change is expected to occur in the next decades. It is therefore essential to establish long-term measurement sites that provide a baseline record of present-day climatic, biogeochemical, and atmospheric conditions and that will be operated over coming decades to monitor change in the Amazon region as human perturbations increase in the future. The Amazon Tall Tower Observatory (ATTO) has been set up in a pristine rain forest region in the central Amazon Basin, about 150 km northeast of the city of Manaus. An ecological survey including a biodiversity assessment has been conducted in the forest region surrounding the site. Two 80 m towers have been operated at the site since 2012, and a 325 m tower is nearing completion in mid-2015. Measurements of micrometeorological and atmospheric chemical variables were initiated in 2012, and their range has continued to broaden over the last few years. The meteorological and micrometeorological measurements include temperature and wind profiles, precipitation, water and energy fluxes, turbulence components, soil temperature profiles and soil heat fluxes, radiation fluxes, and visibility. A tree has been instrumented to measure stem profiles of temperature, light intensity, and water content in cryptogamic covers. The trace gas measurements comprise continuous monitoring of carbon dioxide, carbon monoxide, methane, and ozone at 5 to 8 different heights, complemented by a variety of additional species measured during intensive campaigns (e.g., VOC, NO, NO2, and OH reactivity). Aerosol optical, microphysical, and chemical measurements are made above the canopy as well as in the canopy space. They include light scattering and absorption, aerosol fluorescence, number and volume size distributions, chemical composition, cloud condensation nuclei (CCN) concentrations, and hygroscopicity. Initial results from ecological, meteorological, and chemical studies at the ATTO site are presented in this paper.
650 $aAmazonia
650 $aClima
653 $aMonitoramento
700 1 $aACEVEDO, O. C.
700 1 $aARAUJO, A.
700 1 $aARTAXO, P.
700 1 $aBARBOSA, C. G. G.
700 1 $aBARBOSA, H. M. J.
700 1 $aBRITO, J.
700 1 $aCARBONE, S.
700 1 $aCHI, X.
700 1 $aCINTRA, B. B. L.
700 1 $aSILVA, N. F. da
700 1 $aDIAS, N. L.
700 1 $aDIAS-JÚNIOR, C. Q.
700 1 $aDITAS, F.
700 1 $aDITZ, R.
700 1 $aGODOI, A. F. L.
700 1 $aGODOI, R. H. M.
700 1 $aHEIMANN, M.
700 1 $aHOFFMANN, T.
700 1 $aKESSELMEIER, J.
700 1 $aKÖNEMANN, T.
700 1 $aKRÜGER, M. L.
700 1 $aLAVRIC, J. V.
700 1 $aMANZI, A. O.
700 1 $aMORAN-ZULOAGA, D.
700 1 $aNÖLSCHER, A. C.
700 1 $aNOGUEIRA, D. S.
700 1 $aPIEDADE, M. T. F.
700 1 $aPÖHLKER, C.
700 1 $aPÖSCHL, U.
700 1 $aRIZZO, L. V.
700 1 $aRO, C.-U.
700 1 $aRUCKTESCHLER, N.
700 1 $aSÁ, L. D. A.
700 1 $aSÁ, M. D. O.
700 1 $aSALES, C. B.
700 1 $aSANTOS, R. M. N. dos
700 1 $aSATURNO, J.
700 1 $aSCHÖNGART, J.
700 1 $aSÖRGEL, M.
700 1 $aSOUZA, C. M. de
700 1 $aSOUZA, R. A. F. de
700 1 $aSU, H.
700 1 $aTARGHETTA, N.
700 1 $aTÓTA, J.
700 1 $aTREBS, I.
700 1 $aTRUMBORE, S.
700 1 $aEIJCK, A. van
700 1 $aWALTER, D.
700 1 $aWANG, Z.
700 1 $aWEBER, B.
700 1 $aWILLIAMS, J.
700 1 $aWINDERLICH, J.
700 1 $aWITTMANN, F.
700 1 $aWOLFF, S.
700 1 $aYÁÑEZ-SERRANO, A. M.
773 $tAtmospheric Chemistry and Physics Discuss$gv. 15, n. 18, p. 11599-11726, 2015.
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