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| Registros recuperados : 80 | |
| 45. |  | MANCINI, A. L.; BARIONI, L. G.; LIMA, H. N.; SANTOS, J. W.; SILVA, R. D. R.; SANTOS, E. H. dos; DIAS, F. R. T. A compact and flexible C++ framework to support modular development of hierarchical dynamic systems simulators (wip): Embrapa agricultural informatics. In: SYMPOSIUM ON THEORY OF MODELING & SIMULATION, 2014, San Diego. Proceedings... San Diego: Society for Computer Simulation International, 2014. Não paginado.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Pantanal. |
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| 46. | | JARDINE, J. G.; MAZONI, I.; MANCINI, A. L.; BORRO, L. C.; ALVARENGA, D.; CECÍLIO, P. L.; PELLIGRINELLI, T. V.; NESHICH, G. How did the structure function descriptors of proteins change with introduction of 'remediated' PDB files. In: RED IBEROAMERICANA DE BIOINFORMÁTICA CONGRESS, 5., 2008, Santiago. Program and abstracts... Santiago. Pontificia Universidade Católica de Chile, 2008. p. 15.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 48. | | HIGA, R. H.; CRUZ, S. A. B. da; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; FILETO, R.; MANCINI, A. L.; NESHICH, G. Building multiple sequence alignments with a flavour of HSSP alignments. In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 28. X-meeting 2005. Presented Posters. Na publicação: Paula Regina Kuser.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 49. | | FALCAO, P. R. K.; TADA, S. F. de S.; SOUZA, A. P.; YAMAGISHI, M. E. B.; MANCINI, A. L.; FILETO, R.; HIGA, R. H.; NESHICH, G. Modelagem molecular da proteína small heat shock de Xylella fastidiosa. Campinas: Embrapa Informática Agropecuária, 2004. 5 p. (Embrapa Informática Agropecuária. Comunicado técnico, 64). Na publicação: Michel Eduardo Beleza Yamaghishi.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 55. | | MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; BORRO, L. C.; ALVARENGA, D.; CECILIO, P. L.; PELLIGRINELLI, T. V.; NESHICH, G. Structure descriptors of chameleon sequences. In: RED IBEROAMERICANA DE BIOINFORMÁTICA CONGRESS, 5., 2008, Chile. Program and abstracts... Santiago: Pontificia Universidad Católica de Chile, 2008. Não paginado. RIB 2008.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 56. | | MANCINI, A. L.; HIGA, R. H.; OLIVEIRA, A.; DOMINIQUINI, F.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; TOGAWA, R. C.; NESHICH, G. Sting contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces. Bioinformatics, v. 20, n. 13, p. 2145-2147, 2004. Na publicação: P. R. Kuser.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 57. | | MOURA, M. F.; MANCINI, A. L.; BENATTI, R. M.; RODRIGUES, L. N.; VICTORIA, D. de C.; ROMANI, L. A. S.; OLIVEIRA, S. R. de M.; SILVA, L. E. A.; BEZERRA, G. A.; FRANCIOLI, G. A. Um ambiente para uso de outorga compartilhada de água. In: CONGRESSO BRASILEIRO DE AGROINFORMÁTICA, 12., 2019, Indaiatuba. Anais... Ponta Grossa: SBIAGRO, 2019. p. 521-522. Na publicação: Daniel Victoria, Luciana Alvim Romani, Stanley R Medeiros Oliveira. Organizadores: Maria Fernanda Moura, Jayme Garcia Arnal Barbedo, Alaine Margarete Guimarães, Valter Castelhano de Oliveira. SBIAgro 2019.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 58. | | RIBEIRO, C.; TOGAWA, R. C.; NESHICH, I. A. P.; MAZONI, I.; MANCINI, A. L.; MINARDI, R. C. de M.; SILVEIRA, C. H. da; JARDINE, J. G.; SANTORO, M. M.; NESHICH, G. Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors. BMC Structural Biology, London, v. 10, n. 36, p. 1-16, 2010.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 59. | | RIBEIRO; TOGAWA, R. C.; NESHICH, I. A. P.; MAZONI, I.; MANCINI, A. L.; MINARDI, R. C. de M.; SILVEIRA, C. H. da; JARDINE, J. G.; SANTORO, M. M.; NESHICH, G. Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors. BMC Structural Biology, London, v. 10, n. 36, p. 1-16, 2010. Disponível em:.Acesso em: 5 jan. 2011.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 60. | | HIGA, R. H.; MONTAGNER, A. J.; TOGAWA, R. C.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; MANCINI, A. L.; PAPPAS JUNIOR, G.; MIURA, R. T.; HORITA, L. G.; NESHICH, G. ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure. Bioinformatics, v. 20, n. 12, p. 1983-1985, 2004. Na publicação: P. R. Kuser.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 80 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Agricultura Digital. Para informações adicionais entre em contato com cnptia.biblioteca@embrapa.br. |
Registro Completo
|
Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
26/03/2009 |
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Data da última atualização: |
15/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; BORRO, L. C.; ALVARENGA, D.; CECILIO, P. L.; PELLIGRINELLI, T. V.; NESHICH, G. |
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Afiliação: |
ADAUTO LUIZ MANCINI, CNPTIA; JOSE GILBERTO JARDINE, CNPTIA; IVAN MAZONI, CNPTIA; LUIZ CÉSAR BORRO; DANIEL ALVARENGA; PABLO LIRA CECÍLIO; THAÍS VITAL PELLIGRINELLI; GORAN NESHICH, CNPTIA. |
|
Título: |
Structure descriptors of chameleon sequences. |
|
Ano de publicação: |
2008 |
|
Fonte/Imprenta: |
In: RED IBEROAMERICANA DE BIOINFORMÁTICA CONGRESS, 5., 2008, Chile. Program and abstracts... Santiago: Pontificia Universidad Católica de Chile, 2008. |
|
Páginas: |
Não paginado. |
|
Idioma: |
Inglês |
|
Notas: |
RIB 2008. |
|
Conteúdo: |
It has been know since the early work by Sander and Kabsch in 1984 that some identical sequence motifs make completely different local (but extented) folds. In that work, Sander and Kabsch showed the existence of a number of pentapeptides, capable of nucleating both alpha helix and beta strand in different sequence and structure constellations. However, the authors had at that time a very limited universe on which to base their conclusions; namely, the size of the PDB at that time (1984) was only 154 protein structure available. In 2008 the number of available structure is 51,079 (May 27th), 47137containing proteins only. Consequenly, the database is 306 times larger and we took full advantage of this fact. In order to analyze chameleon sequences, we established very strict rules and considered only those ones that passed the test of consensus among HSSP and STRIDE definitions for the Secondary Structure Elements. This is a major difference in our approach versus that of Sander and Kabsch. We then created a data mart of sequences and respective structures with variable size and subjected them to analysis of structure descriptors stored in STING_RDB. Results are discussed in terms of the influence that a local 3D environment has on SSE necleation. |
|
Palavras-Chave: |
Bioinformática; Proteinas. |
|
Thesaurus NAL: |
Bioinformatics; Proteins. |
|
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
|
Marc: |
LEADER 02073nam a2200265 a 4500
001 1031817
005 2020-01-15
008 2008 bl uuuu u00u1 u #d
100 1 $aMANCINI, A. L.
245 $aStructure descriptors of chameleon sequences.$h[electronic resource]
260 $aIn: RED IBEROAMERICANA DE BIOINFORMÁTICA CONGRESS, 5., 2008, Chile. Program and abstracts... Santiago: Pontificia Universidad Católica de Chile$c2008
300 $aNão paginado.
500 $aRIB 2008.
520 $aIt has been know since the early work by Sander and Kabsch in 1984 that some identical sequence motifs make completely different local (but extented) folds. In that work, Sander and Kabsch showed the existence of a number of pentapeptides, capable of nucleating both alpha helix and beta strand in different sequence and structure constellations. However, the authors had at that time a very limited universe on which to base their conclusions; namely, the size of the PDB at that time (1984) was only 154 protein structure available. In 2008 the number of available structure is 51,079 (May 27th), 47137containing proteins only. Consequenly, the database is 306 times larger and we took full advantage of this fact. In order to analyze chameleon sequences, we established very strict rules and considered only those ones that passed the test of consensus among HSSP and STRIDE definitions for the Secondary Structure Elements. This is a major difference in our approach versus that of Sander and Kabsch. We then created a data mart of sequences and respective structures with variable size and subjected them to analysis of structure descriptors stored in STING_RDB. Results are discussed in terms of the influence that a local 3D environment has on SSE necleation.
650 $aBioinformatics
650 $aProteins
653 $aBioinformática
653 $aProteinas
700 1 $aJARDINE, J. G.
700 1 $aMAZONI, I.
700 1 $aBORRO, L. C.
700 1 $aALVARENGA, D.
700 1 $aCECILIO, P. L.
700 1 $aPELLIGRINELLI, T. V.
700 1 $aNESHICH, G.
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