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| Registros recuperados : 15 | |
| 2. |  | BRESSO, E.; TOGAWA, R.; HAMMOND-KOSACK, K.; URBAN, M.; MAIGRET, B.; MARTINS, N. F. GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. BMC Bioinformatics, v. 17, suppl 18, 2016. Article 463. (Open Access).| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 4. | | AMORA, D. X.; BRESSO, E.; TOGAWA, R. C.; GRYNBERG, P.; MAIGRET, B.; MARTINS, N. F. Prediction of G protein coupled receptors from plant genomes. International Journal of Current Research in Biosciences and Plant Biology, v. 3, n. 11, p. 92-107, 2016. (Online).| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | BRESSO, E.; LEROUX, V.; URBAN, M.; HAMMOND-KOSACK, K. E.; MAIGRET, B.; MARTINS, N. F. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneol synthase: a potential target to reduce Fusarium head blight disease. Journal of Molecular Modeling, v. 22, n. 7, article 163, 2016.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 7. | | YAMAGISHI, M. E. B.; MARTINS, N. F.; NESHICH, G.; CAI, W.; SHAO, X.; BEAUTRAIT, A.; MAIGRET, B. A fast surface-matching procedure for protein-ligand docking. Journal of Molecular Modeling, v. 12, n. 6, p. 965-972, Sept. 2006.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 9. | | MARTINS, N. F.; BRESSO, E.; TOGAWA, R. C.; URBAN, M.; ANTONIW, J.; MAIGRET, B.; HAMMOND-KOSACK, K. Searching for novel targets to control wheat Head Blight Disease-I-Protein identification, 3D modeling and virtual screening. Advances in Microbiology, v. 6, p. 811-830, 2016.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 10. | | FERNANDES, H. R.; CAMPOS, S. V. A.; MAIGRET, B.; DEVIGNES, M. D.; SMAIL TABBONE, M.; MARTINS, N. F. TLdb: Targets and ligands database. In: ANNUAL MEETING OF THE SBBq, 36.; IUBMB CONFERENCE, 10., 2007, Salvador, BA. Infectious diseases: biochemistry of parasites, vectors and hosts: program and abstracts. São Paulo, SP: Brazilian Society for Biochemistry and Molecular Biology, 2007.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 11. | | LIMA, J. D.; MAIGRET, B.; FERNANDEZ, D.; DECLOQUEMENT, J.; PINHO, D.; ALBUQUERQUE, E. V. S.; RODRIGUES, M. O.; MARTINS, N. F. Searching in silico novel targets for specific coffee rust disease control. Lecture Notes in Computer Science, 11347 LNBI, p. 109-115, 2020. Including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics.| Biblioteca(s): Embrapa Agroindústria Tropical. |
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| 12. | | MARES-GUIA, T. R.; MAIGRET, B.; MARTINS, N. F.; MAIA, A. L. T.; VILELA, L.; RAMOS, C. H. I.; JULIANO NETO, L.; JULIANO, M. A.; MARES-GUIA, M. L. dos; SANTORO, M. M. Molecular dynamics and circular dichroism studies of human and rat C-peptides. Journal of Molecular Graphics and Modelling, v. 25, n. 4, p. 532-542, Dec. 2006.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 13. | | BASTOS, I. M. D.; GRELLIER, P.; MARTINS, N. F.; CADAVID-RESTREPO, G.; SOUZA-AULT, M. R. de; AUGUSTYNS, K.; TEIXEIRA, A. R. L.; SCHRÉVEL, J.; MAIGRET, B.; SILVEIRA, J. F. da; SANTANA. J. M. Molecular, functional and structural properties of the prolyl oligopeptidase of Trypanosoma cruzi (POP Tc80), which is required for parasite entry into mammalian cells. Biochemical Journal, v. 388, pt. 1, p. 29-38, may, 2005.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 14. | | BRESSO, E.; FERNANDEZ, D.; AMORA, D. X.; NOEL, P.; PETITOT, A.-S.; SA, M. E. L. de; ALBUQUERQUE, E. V. S.; DANCHIN, E. G. J.; MAIGRET, B.; MARTINS, N. F. A chemosensory GPCR as a potential target to control the Root-Knot Nematode Meloidogyne incognita parasitism in plants. Molecules, v. 24, n. 20, article 3798, 2019.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 15. | | YAMAGISHI, M. E. B.; BEZERRA, G. B. P.; QUINALIA, T.; KUSER, P. R.; HIGA, R. H.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; CRUZ, S. A. B.; OLIVEIRA, S. R. M.; NESHICH, G.; RAY, N.; MAIGRET, B. An interative protein interface surface Java Viewer. In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. p. 17. X-meeting 2005. Presented posters.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 15 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Agricultura Digital. Para informações adicionais entre em contato com cnptia.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
20/04/2006 |
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Data da última atualização: |
17/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
YAMAGISHI, M. E. B.; BEZERRA, G. B. P.; QUINALIA, T.; KUSER, P. R.; HIGA, R. H.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; CRUZ, S. A. B.; OLIVEIRA, S. R. M.; NESHICH, G.; RAY, N.; MAIGRET, B. |
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Afiliação: |
MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; GEORGE B. P. BEZERRA; THIAGO QUINALIA; PAULA REGINA KUSER FALCAO, CNPTIA; ROBERTO HIROSHI HIGA, CNPTIA; ADAUTO LUIZ MANCINI, CNPTIA; JOSÉ GILBERTO JARDINE, CNPTIA; IVAN MAZONI, CNPTIA; EDGARD HENRIQUE DOS SANTOS, CNPTIA; SÉRGIO APARECIDO BRAGA DA CRUZ, CNPTIA; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; GORAN NESHICH, CNPTIA; NICHOLAS RAY, Inria Lorraine; BERNARD MAIGRET, Universite Henri Poincare. |
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Título: |
An interative protein interface surface Java Viewer. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. |
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Páginas: |
p. 17. |
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Idioma: |
Inglês |
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Notas: |
X-meeting 2005. Presented posters. |
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Conteúdo: |
More than 50% of protein structures deposited in the PDB database have two or more chains according to the PDB Metrics1 software. Therefore, there are a plenty of protein complexes in the PDB database. It is important to understand the physical-chemical forces that are involved in protein complexes aggregation. In order to facilitate this analyze, it would be desirable to get two protein chains and visualize their contact interface surfaces separately, and paint over each one of them a common physical-chemical property that could be important in the complex formation. Using weighted Delaunay triangulation and marching tetrahedra algorithms from the CGAL library these contact interface surfaces were generated and rendered in an Interactive Java Viewer based on JavaView2 library. The surfaces can be rotated, translated, scaled and it is possible to identify from which amino acid a given vertice came from, among other useful features. All the physical-chemical parameters available in Java Protein Dossier - JPD can be used to paint the surfaces facilitating the analyses. |
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Palavras-Chave: |
Interface; Java. |
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Thesagro: |
Proteína. |
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Thesaurus NAL: |
Proteins. |
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Categoria do assunto: |
-- |
|
Marc: |
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260 $aIn: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional$c2005
300 $ap. 17.
500 $aX-meeting 2005. Presented posters.
520 $aMore than 50% of protein structures deposited in the PDB database have two or more chains according to the PDB Metrics1 software. Therefore, there are a plenty of protein complexes in the PDB database. It is important to understand the physical-chemical forces that are involved in protein complexes aggregation. In order to facilitate this analyze, it would be desirable to get two protein chains and visualize their contact interface surfaces separately, and paint over each one of them a common physical-chemical property that could be important in the complex formation. Using weighted Delaunay triangulation and marching tetrahedra algorithms from the CGAL library these contact interface surfaces were generated and rendered in an Interactive Java Viewer based on JavaView2 library. The surfaces can be rotated, translated, scaled and it is possible to identify from which amino acid a given vertice came from, among other useful features. All the physical-chemical parameters available in Java Protein Dossier - JPD can be used to paint the surfaces facilitating the analyses.
650 $aProteins
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700 1 $aBEZERRA, G. B. P.
700 1 $aQUINALIA, T.
700 1 $aKUSER, P. R.
700 1 $aHIGA, R. H.
700 1 $aMANCINI, A. L.
700 1 $aJARDINE, J. G.
700 1 $aMAZONI, I.
700 1 $aSANTOS, E. H. dos
700 1 $aCRUZ, S. A. B.
700 1 $aOLIVEIRA, S. R. M.
700 1 $aNESHICH, G.
700 1 $aRAY, N.
700 1 $aMAIGRET, B.
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