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Registro Completo |
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Biblioteca(s): |
Embrapa Unidades Centrais. |
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Data corrente: |
24/08/2018 |
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Data da última atualização: |
25/02/2019 |
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Autoria: |
FARAH, M. M.; FORTES, M. R. S.; KELLY, M.; POTO-NETO, L. R.; MEIRA, C. T.; CARREÑO, L. O. D.; FONSECA, R. da; MOORE, S. S. |
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Afiliação: |
Michel Marques Farah, Universidade Estadual Paulista - Unesp/Faculdade de Ciências Agrárias e Veterinárias; Marina Rufino Salinas Fortes, The University of Queensland/School of Chemistry and Molecular Biosciences; Matthew Kelly, Australian Agricultural Company, Corporate Office; Laercio Ribeiro Porto-Neto, Commonwealth Scientific and Industrial Research Organisation/Queensland Bioscience Precinct; Camila Tangari Meira, Universidade Estadual Paulista - Unesp/Faculdade de Ciências Agrárias e Veterinárias; Luis Orlando Duitama Carreño, Universidade Estadual Paulista - Unesp/Faculdade de Ciências Agrárias e Veterinárias; Ricardo da Fonseca, Universidade Estadual Paulista - Unesp/Faculdade de Ciências Agrárias e Tecnológicas; Stephen Stewart Moore, The University of Queensland, Queensland Alliance for Agriculture and Food Innovation/Centre for Animal Science/Queensland Bioscience Precint. |
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Título: |
Accuracy of genomic selection predictions for hip height in Brahman cattle using different relationship matrices. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Pesquisa Agropecuária Brasileira, Brasília, DF, v. 53, n. 6, p. 717-726, June, 2018. |
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Idioma: |
Inglês |
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Notas: |
Título em português: Acurácia da predição genômica para altura do quadril em bovinos Brahman com uso de diferentes matrizes de parentesco. |
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Conteúdo: |
The objective of this work was to evaluate the effects of genomic information on the genetic evaluation of hip height in Brahman cattle using different matrices built from genomic and pedigree data. Hip height measurements from 1,695 animals, genotyped with high-density SNP chip or imputed from 50 K high-density SNP chip, were used. The numerator relationship matrix (NRM) was compared with the H matrix, which incorporated the NRM and genomic relationship (G) matrix simultaneously. The genotypes were used to estimate three versions of G: observed allele frequency (HGOF), average minor allele frequency (HGMF), and frequency of 0.5 for all markers (HG50). For matrix comparisons, animal data were either used in full or divided into calibration (80% older animals) and validation (20% younger animals) datasets. The accuracy values for the NRM, HGOF, and HG50 were 0.776, 0.813, and 0.594, respectively. The NRM and HGOF showed similar minor variances for diagonal and off-diagonal elements, as well as for estimated breeding values. The use of genomic information resulted in relationship estimates similar to those obtained based on pedigree; however, HGOF is the best option for estimating the genomic relationship matrix and results in a higher prediction accuracy. The ranking of the top 20% animals was very similar for all matrices, but the ranking within them varies depending on the method used. |
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Palavras-Chave: |
Alelo raro; Genômica. |
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Thesagro: |
Bos Indicus; Gado de Corte. |
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Thesaurus Nal: |
Beef cattle; Genomics; Zebu. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/181931/1/Accuracy-of-genomic-selection-predictions-for-hip.pdf
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Marc: |
LEADER 02416naa a2200301 a 4500
001 2094513
005 2019-02-25
008 2018 bl uuuu u00u1 u #d
100 1 $aFARAH, M. M.
245 $aAccuracy of genomic selection predictions for hip height in Brahman cattle using different relationship matrices.$h[electronic resource]
260 $c2018
500 $aTítulo em português: Acurácia da predição genômica para altura do quadril em bovinos Brahman com uso de diferentes matrizes de parentesco.
520 $aThe objective of this work was to evaluate the effects of genomic information on the genetic evaluation of hip height in Brahman cattle using different matrices built from genomic and pedigree data. Hip height measurements from 1,695 animals, genotyped with high-density SNP chip or imputed from 50 K high-density SNP chip, were used. The numerator relationship matrix (NRM) was compared with the H matrix, which incorporated the NRM and genomic relationship (G) matrix simultaneously. The genotypes were used to estimate three versions of G: observed allele frequency (HGOF), average minor allele frequency (HGMF), and frequency of 0.5 for all markers (HG50). For matrix comparisons, animal data were either used in full or divided into calibration (80% older animals) and validation (20% younger animals) datasets. The accuracy values for the NRM, HGOF, and HG50 were 0.776, 0.813, and 0.594, respectively. The NRM and HGOF showed similar minor variances for diagonal and off-diagonal elements, as well as for estimated breeding values. The use of genomic information resulted in relationship estimates similar to those obtained based on pedigree; however, HGOF is the best option for estimating the genomic relationship matrix and results in a higher prediction accuracy. The ranking of the top 20% animals was very similar for all matrices, but the ranking within them varies depending on the method used.
650 $aBeef cattle
650 $aGenomics
650 $aZebu
650 $aBos Indicus
650 $aGado de Corte
653 $aAlelo raro
653 $aGenômica
700 1 $aFORTES, M. R. S.
700 1 $aKELLY, M.
700 1 $aPOTO-NETO, L. R.
700 1 $aMEIRA, C. T.
700 1 $aCARREÑO, L. O. D.
700 1 $aFONSECA, R. da
700 1 $aMOORE, S. S.
773 $tPesquisa Agropecuária Brasileira, Brasília, DF$gv. 53, n. 6, p. 717-726, June, 2018.
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Registro original: |
Embrapa Unidades Centrais (AI-SEDE) |
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Registro Completo
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Biblioteca(s): |
Embrapa Amazônia Oriental. |
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Data corrente: |
13/01/2015 |
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Data da última atualização: |
03/06/2022 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
MESQUITA, U. de O.; LEÃO, V. M.; SOUZA, J. P. S.; LUCAS, F. C. A.; COSTA, J. C. M. da; GOIS, M. A. F.; SOUZA, H. J. R.; XAVIER JUNIOR, S. R. |
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Afiliação: |
Ulliane de Oliveira Mesquita, UEPA; Victor Miranda Leão, UEPA; João Paulo Silva Souza, UEPA; Flávia Cristina Araújo Lucas, UEPA; Jéssica Caroline Mendes da Costa, UEPA; Maria Antônia Ferreira Gois, UEPA; HELENA JOSEANE RAIOL SOUZA, CPATU; SEBASTIAO RIBEIRO XAVIER JUNIOR, CPATU. |
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Título: |
Levantamento das melastomataceae dos herbários IAN e MFS no estado do Pará. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
In: CONGRESO LATINOAMERICANO DE BOTÁNICA, 11.; CONGRESSO NACIONAL DE BOTÂNICA, 65.; ENCONTRO REGIONAL DE BOTÂNICOS - MG, BA, ES, 34., 2014, Salvador. Botânica na América Latina: conhecimento, interação e difusão. Brasília, DF: SBS, 2014. |
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Idioma: |
Português |
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Palavras-Chave: |
Banco de dados; Melastomataceae A Juss. |
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Thesagro: |
Herbário. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/115399/1/4390-FTB.pdf
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Marc: |
LEADER 00860nam a2200217 a 4500
001 2005373
005 2022-06-03
008 2014 bl uuuu u00u1 u #d
100 1 $aMESQUITA, U. de O.
245 $aLevantamento das melastomataceae dos herbários IAN e MFS no estado do Pará.$h[electronic resource]
260 $aIn: CONGRESO LATINOAMERICANO DE BOTÁNICA, 11.; CONGRESSO NACIONAL DE BOTÂNICA, 65.; ENCONTRO REGIONAL DE BOTÂNICOS - MG, BA, ES, 34., 2014, Salvador. Botânica na América Latina: conhecimento, interação e difusão. Brasília, DF: SBS$c2014
650 $aHerbário
653 $aBanco de dados
653 $aMelastomataceae A Juss
700 1 $aLEÃO, V. M.
700 1 $aSOUZA, J. P. S.
700 1 $aLUCAS, F. C. A.
700 1 $aCOSTA, J. C. M. da
700 1 $aGOIS, M. A. F.
700 1 $aSOUZA, H. J. R.
700 1 $aXAVIER JUNIOR, S. R.
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Embrapa Amazônia Oriental (CPATU) |
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