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Registro Completo |
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
17/06/2011 |
Data da última atualização: |
07/10/2013 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
NASCIMENTO, L. C.; COSTA, G. G. L.; VIDAL, R. O.; MEYER, L.; BINNECK, E.; KIDO, E. A.; RODRIGUES, F.; KULCHESKI, F. R.; NEPOMUCENO, A. L.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. |
Afiliação: |
L. C. NASCIMENTO, UNICAMP; G. G. L. COSTA, UNICAMP; R. O. VIDAL, UNICAMP; L. MEYER, UNICAMP; ELISEU BINNECK, CNPSO; E. A. KIDO, Universidade Federal de Pernambuco; F. RODRIGUES, CNPSo; F. R. KULCHESKI, UFRGS; ALEXANDRE LIMA NEPOMUCENO, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; GONÇALO A. G. PEREIRA, UNICAMP; M. F. CARAZZOLLE, UNICAMP. |
Título: |
Bioinformatics analysis applied to genosoja project. |
Ano de publicação: |
2009 |
Fonte/Imprenta: |
In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book ... Rio de Janeiro: AB3C, 2009. p. 22. X-Meeting 2009. |
Idioma: |
Inglês |
Conteúdo: |
Soybean is the legume of most economic importance in the international market, with world production of almost two hundred and thirty million tons in the 2007/2008 harvest. The Brazil appears as the largest exporter of the product in the world, with about twenty-five percent of the world production. In 2007 the brazilian government started the GENOSOJA project with the main objective of discover new treats to improve the plant production process, emphasizing in stresses that affect the national production like the occurrence of droughts, pests attacks and the Asian rust disease. This work is inserted in the GENOSOJA scope and aims to generate bioinformatics tools to integrate the public soybean data like ESTS and genomic sequences, with all data generated during the project like SuperSAGE tags, MicroRNAs and subtractive libraries sequences analysis. These sequences were generated using high throughput sequencing technologies and for each analysis a specific pipeline have to be implemented. Actually, we have processed and performed a hybrid assembly of 1,276,813 ESTs available at NCBI (sequenced by sanger and pyrosequencing tecnologies) resulting in 30,809 contigs and 29,938 singlets, supersage analysis of 2,334,864 tags sequenced by Ilumina/Solexa from several libraries resulting in 54,052 unique tags, mapped into soybean genome and assembly of 11,783,331 short-sequences sequenced by Ilumina/Solexa generated by subtracted library experiments from leaf and root tissues submitted to drought stress resulting in 5,084 genes. All these results are making available to the final user in a web interface that allows searches by keywords, statistics comparisons, visualization of automatic annotation (AutoFACT pipeline) and the gene ontology classification. MenosSoybean is the legume of most economic importance in the international market, with world production of almost two hundred and thirty million tons in the 2007/2008 harvest. The Brazil appears as the largest exporter of the product in the world, with about twenty-five percent of the world production. In 2007 the brazilian government started the GENOSOJA project with the main objective of discover new treats to improve the plant production process, emphasizing in stresses that affect the national production like the occurrence of droughts, pests attacks and the Asian rust disease. This work is inserted in the GENOSOJA scope and aims to generate bioinformatics tools to integrate the public soybean data like ESTS and genomic sequences, with all data generated during the project like SuperSAGE tags, MicroRNAs and subtractive libraries sequences analysis. These sequences were generated using high throughput sequencing technologies and for each analysis a specific pipeline have to be implemented. Actually, we have processed and performed a hybrid assembly of 1,276,813 ESTs available at NCBI (sequenced by sanger and pyrosequencing tecnologies) resulting in 30,809 contigs and 29,938 singlets, supersage analysis of 2,334,864 tags sequenced by Ilumina/Solexa from several libraries resulting in 54,052 unique tags, mapped into soybean genome and assembly of 11,783,331 short-sequences sequenced by Ilumina/Solexa generated by subtracted library experiments from leaf and root tissues submit... Mostrar Tudo |
Palavras-Chave: |
Bioinformática. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/36655/1/xmeeting2009-abstracts.pdf
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Marc: |
LEADER 02613nam a2200253 a 4500 001 1894410 005 2013-10-07 008 2009 bl uuuu u00u1 u #d 100 1 $aNASCIMENTO, L. C. 245 $aBioinformatics analysis applied to genosoja project. 260 $aIn: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book ... Rio de Janeiro: AB3C, 2009. p. 22. X-Meeting 2009.$c2009 520 $aSoybean is the legume of most economic importance in the international market, with world production of almost two hundred and thirty million tons in the 2007/2008 harvest. The Brazil appears as the largest exporter of the product in the world, with about twenty-five percent of the world production. In 2007 the brazilian government started the GENOSOJA project with the main objective of discover new treats to improve the plant production process, emphasizing in stresses that affect the national production like the occurrence of droughts, pests attacks and the Asian rust disease. This work is inserted in the GENOSOJA scope and aims to generate bioinformatics tools to integrate the public soybean data like ESTS and genomic sequences, with all data generated during the project like SuperSAGE tags, MicroRNAs and subtractive libraries sequences analysis. These sequences were generated using high throughput sequencing technologies and for each analysis a specific pipeline have to be implemented. Actually, we have processed and performed a hybrid assembly of 1,276,813 ESTs available at NCBI (sequenced by sanger and pyrosequencing tecnologies) resulting in 30,809 contigs and 29,938 singlets, supersage analysis of 2,334,864 tags sequenced by Ilumina/Solexa from several libraries resulting in 54,052 unique tags, mapped into soybean genome and assembly of 11,783,331 short-sequences sequenced by Ilumina/Solexa generated by subtracted library experiments from leaf and root tissues submitted to drought stress resulting in 5,084 genes. All these results are making available to the final user in a web interface that allows searches by keywords, statistics comparisons, visualization of automatic annotation (AutoFACT pipeline) and the gene ontology classification. 653 $aBioinformática 700 1 $aCOSTA, G. G. L. 700 1 $aVIDAL, R. O. 700 1 $aMEYER, L. 700 1 $aBINNECK, E. 700 1 $aKIDO, E. A. 700 1 $aRODRIGUES, F. 700 1 $aKULCHESKI, F. R. 700 1 $aNEPOMUCENO, A. L. 700 1 $aABDELNOOR, R. V. 700 1 $aPEREIRA, G. A. G. 700 1 $aCARAZZOLLE, M. F.
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Registro original: |
Embrapa Soja (CNPSO) |
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Registro Completo
Biblioteca(s): |
Embrapa Florestas. |
Data corrente: |
16/07/2019 |
Data da última atualização: |
30/10/2019 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
B - 1 |
Autoria: |
MARCON, A. K.; LONGHI-SANTOS, T.; GALVÃO, F.; MARTINS, K. G.; BOTOSSO, P. C.; BLUM, C. T. |
Afiliação: |
Amanda Koche Marcon, UFPR; Tomaz Longhi-Santos, UFPR; Franklin Galvão, UFPR; Kelly Geronazzo Martins, UNICENTRO; PAULO CESAR BOTOSSO, CNPF; Christopher Thomas Blum, UFPR. |
Título: |
Climatic response of Cedrela fissilis radial growth in the Ombrophilous Mixed Forest, Paraná, Brazil. |
Ano de publicação: |
2019 |
Fonte/Imprenta: |
Floresta e Ambiente, v. 26, n. 3, e20180361, 2019. 12 p. |
DOI: |
10.1590/2179-8087.036118 |
Idioma: |
Inglês |
Conteúdo: |
We examined the climatic response of Cedrela fissilis radial growth based on precipitation, air relative humidity, temperature and monthly thermal amplitude. It was intended to assess how the secondary growth of C. fissilis is influenced by the climatic variables and which one are the best growth predictors in Ombrophilous Mixed Forest, southern Brazil. Wood cores were processed using classical dendrochronology methodology. Principal Components Analysis, Generalized Linear Models and correlation were used to explore the relationship between radial growth and climate. Our results indicated that the best radial growth predictor is the temperature: the seasonal behavior, under well-watered conditions, seems to have a dominant effect on growth responses. Changes in tree growth corresponding to an increase in temperatures suggest a sensitivity of the species to climate changes. These results are important to help understand how the global warming may influence long-lived pioneer tree growth. |
Palavras-Chave: |
Araucaria forest; Bioma e ecologia florestal; Dendrocronologia; Dendroecologia; Dendroecology; Floresta com Araucaria. |
Thesaurus NAL: |
Climate change; Dendrochronology. |
Categoria do assunto: |
K Ciência Florestal e Produtos de Origem Vegetal |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/199596/1/2019-P.Botosso-Floram-Climatic.pdf
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Marc: |
LEADER 01877naa a2200289 a 4500 001 2110648 005 2019-10-30 008 2019 bl uuuu u00u1 u #d 024 7 $a10.1590/2179-8087.036118$2DOI 100 1 $aMARCON, A. K. 245 $aClimatic response of Cedrela fissilis radial growth in the Ombrophilous Mixed Forest, Paraná, Brazil.$h[electronic resource] 260 $c2019 520 $aWe examined the climatic response of Cedrela fissilis radial growth based on precipitation, air relative humidity, temperature and monthly thermal amplitude. It was intended to assess how the secondary growth of C. fissilis is influenced by the climatic variables and which one are the best growth predictors in Ombrophilous Mixed Forest, southern Brazil. Wood cores were processed using classical dendrochronology methodology. Principal Components Analysis, Generalized Linear Models and correlation were used to explore the relationship between radial growth and climate. Our results indicated that the best radial growth predictor is the temperature: the seasonal behavior, under well-watered conditions, seems to have a dominant effect on growth responses. Changes in tree growth corresponding to an increase in temperatures suggest a sensitivity of the species to climate changes. These results are important to help understand how the global warming may influence long-lived pioneer tree growth. 650 $aClimate change 650 $aDendrochronology 653 $aAraucaria forest 653 $aBioma e ecologia florestal 653 $aDendrocronologia 653 $aDendroecologia 653 $aDendroecology 653 $aFloresta com Araucaria 700 1 $aLONGHI-SANTOS, T. 700 1 $aGALVÃO, F. 700 1 $aMARTINS, K. G. 700 1 $aBOTOSSO, P. C. 700 1 $aBLUM, C. T. 773 $tFloresta e Ambiente$gv. 26, n. 3, e20180361, 2019. 12 p.
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