|
|
Registros recuperados : 38 | |
21. | | STOLF, R.; MEDRI, M. E.; PIMENTA, J. A.; BOEGER, M. R. T.; DIAS, J.; LEMOS, N. G.; OLIVEIRA, M. C. N. de; BROGIN, R. L.; YAMANAKA, N.; NEUMAIER, N.; FARIAS, J. R. B.; NEPOMUCENO, A. L. Morpho-anatomical and Micromorphometrical evaluations in soybean genotypes during water stress. Brazilian Archives of Biology and Technology, Curitiba, v. 52, n. 6, p. 1321-1331, Nov./Dec. 2009. Biblioteca(s): Embrapa Soja. |
| |
22. | | YAMANAKA, N.; YAMAOKA, Y.; KATO, M.; LEMOS, N. G.; PASSIANOTTO, A. L. de L.; SANTOS, J. V. M. dos; BENITEZ, E. R.; ABDELNOOR, R. V.; SOARES, R. M.; SUENAGA, K. Development of classification criteria for resistance to soybean rust and differences in virulence among Japanese and Brazilian rust populations. Tropical Plant Pathology, Lavras, v. 35, n. 3, p. 153-162, May./Jun. 2010. Biblioteca(s): Embrapa Soja. |
| |
23. | | YAMANAKA, N.; YAMAOKA, Y.; KATO, M.; LEMOS, N. G.; PASSIANOTTO, A. L. de L.; SANTOS, J. V. M. dos; BENITEZ, E. R.; ABDELNOOR, R. V.; SOARES, R. M.; SUENAGA, K. Difference in virulence among japanese and brazilian isolates of asian soybean rust. In: WORLD SOYBEAN RESEARCH CONFERENCE, 8., 2009, Beijing. Developing a global soy blueprint for a safe secure and sustainable supply: abstracts. Beijing: Chinese Academy of Agricultural Sciences: Institute of Crop Science, 2009. p. 94, ref. P211. WSRC 2009. Editado por Lijuan Qiu, Rongxia Guan, Jian Jin, Qijan Song, Shuntang Guo, Wenbin Li, Yuanchao Wang, Tianfu Han, Xiaobing Liu, Deyue Yu, Lianzhou Jiang, Deliang Peng. Biblioteca(s): Embrapa Soja. |
| |
24. | | YAMANAKA, N.; BENEVENTI, M. A.; POLIZEL, A.; STOLF, R.; PAIVA, A. A. R.; SALINET, L. H.; LEMOS, N. G.; MARIN, S. R. R.; SILVEIRA, C. A.; TOBITA, S.; NAKASHIMA, K.; YAMAGUCHI-SHINOZAKI, K.; FARIAS, J. R. B.; NEPOMUCENO, A. L. Development of transgenic soybean tolerant tos drought stress. In: SUENAGA, K.; KUDO, H.; OSHIO, S. (Ed.). Comprehensive studies on the development of sustainable soybean production technology in South America. Tsukuba: JIRCAS, 2007. p. 21-26. (JIRCAS Working Report, 51). Biblioteca(s): Embrapa Soja. |
| |
25. | | YAMANAKA, N.; LEMOS, N. G.; AKAMATSU, H.; YAMAOKA, Y.; KATO, M.; SILVA, D. C. G.; PASSIANOTTO, A. L. de L.; SANTOS, J. V. M. dos; BENITEZ, E. R.; ABDELNOOR, R. V.; SOARES, R. M.; SUENAGA, K. Pathogenic differences among japonese and brazilian soybean rust populations and resistance useful against brazilian rust populations. In: AKAMATSU, H.; YAMANAKA, N.; SUENAGA, K. (Ed.). Identification of Stable Resistance to Soybean Rust for South America. Tsukuba: JIRCAS, 2014. (JIRCAS Working Report, 81). p. 63-78. Biblioteca(s): Embrapa Soja. |
| |
26. | | CATELLI, L. L.; ARIAS, C. A. A.; DI MAURO, A. O.; CAMARGO, P. O.; MARIN, S. R. R.; POLIZEL, A. M.; SOUZA, L. G.; LEMOS, N. G.; RINCÃO, M. P.; YAMANAKA, N.; ABDELNOOR, R. V. Parámetros genéticos de resistencia asociados a la roya asiática de la soja (Phakopsora pachyrzi). In: CONGRESO LATINOAMERICANO DE GENETICA, 13; CONGRESO DE GENETICA, 6, 2008, Lima. Resumos...Lima: Hozlo S.R.L., 2008. Biblioteca(s): Embrapa Soja. |
| |
27. | | STOLF-MOREIRA, R.; MEDRI, M. E.; NEUMAIER, N.; LEMOS, N. G.; PIMENTA, J. A.; TOBITA, S.; BROGIN, R. L.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. C. N.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Soybean physiology and gene expression during drought. Genetics and Molecular Research, Ribeirão Preto, v. 9, n. 4, p. 1946-1956, 2010. Biblioteca(s): Embrapa Soja. |
| |
28. | | NEPOMUCENO, A. L.; NEUMAIER, N.; FARIAS, J. R. B.; SILVA, J. F. V.; ARIAS, C. A. A.; OYA, T.; MARIN, S. R. R.; BINNECK, E.; LEMOS, N. G.; BRETON, M. C.; MARTINS, P. K.; PEDROSO, J.; DELATTRE, N. Identificação, clonagem e sequenciamento de genes diferencialmente expressos em resposta às variações climáticas em soja. In: HOFFMANN-CAMPO, C. B.; SARAIVA, O. F. (Org.). Resultados de pesquisa da Embrapa Soja - 2001: ecofisiologia e biologia molecular. Londrina: Embrapa Soja, 2002. p. 20-22. (Embrapa Soja. Documentos, 198). Biblioteca(s): Embrapa Soja. |
| |
29. | | SILVA, D. C. G.; MORTEL, M. van de; LEMOS, N. G.; STOLF, R.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; YAMANAKA, N.; BAUM, T. J.; WHITHAM, S. A.; ABDELNOOR, R. Characterization of EST libraries from soybean plants involved in resistant and susceptible interactions with the asian soybean rust pathogen. In: THE INTERNATIONAL CONFERENCE ON THE STATUS OF PLANT & ANIMAL GENOME RESEARCH, 16., 2008, San Diego. Final abstracts guide. [S.l.], 2008, p. 220, P405. Biblioteca(s): Embrapa Soja. |
| |
30. | | MOLINA, J. C.; LEMOS, N. G.; MORALES, A. M.; MARIN, S. R. R.; SILVEIRA, C. A. da; LEMOS, E.; SILVA, J. F. V.; ARIAS, C. A. A.; BINNECK, E.; FARIAS, J. R. B.; NEUMAIER, N.; NEPOMUCENO, A. L. Funcional genomics of soybean roots. In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. p. 256-257. (Embrapa Soja. Documentos, 228). Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. Biblioteca(s): Embrapa Soja. |
| |
31. | | STOLF, R.; MEDRI, M. E.; BROGIN, R. L.; MOLINA, J. C.; SILVEIRA, C. A. da; MARIN, S. R. R.; BINNECK, E.; LEMOS, N. G.; PIOTTO, E. C. S.; DIAS, J.; NEUMAIER, N.; NEPOMUCENO, A. L. Tolerance to drought in Glycine max (L.) Merril: ecophysiological aspects. In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. p. 185. (Embrapa Soja. Documentos, 228). Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. Biblioteca(s): Embrapa Soja. |
| |
32. | | NEPOMUCENO, A. L.; LUGLE, S. M.; ARIAS, C. A. A.; BRIGHENTI, A. M.; NEUMAIER, N.; FARIAS, J. R. B.; MARIN, S. R. R.; SILVEIRA, C. A.; BINNECK, E.; MOLINA, J.; LEMOS, N. G.; STOLF, R. Transformação de plantas de soja por biobalística com genes de interesse (04.2000.322-05). In: HOFFMANN-CAMPO, C. B.; SARAIVA, O. F. (Org.). Resultados de pesquisa da Embrapa Soja - 2002: ecofisiologia e biologia molecular. Londrina: Embrapa Soja, 2003. p. 39-46. (Embrapa Soja. Documentos, 217). Biblioteca(s): Embrapa Soja. |
| |
33. | | BINNECK, E.; SILVA, J. F. V.; NEUMAIER, N.; FARIAS, J. R. B.; ARIAS, C. A. A.; ALMEIDA, A. M. R.; MARIN, S. R. R.; WENDLAND, A.; SILVEIRA, C. A. da; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; STOLF, R.; NEPOMUCENO, A. L. Bioinformatics tools for sequence analysis and annotation applied to soybean functional genome. In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. p. 248-249. (Embrapa Soja. Documentos, 228). Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. Biblioteca(s): Embrapa Soja. |
| |
34. | | POLIZEL, A M.; MEDRI, M. E.; YAMANAKA, N.; BENEVENTI, M. A.; SHINOZAKI, K. Y.; NAKASHIMA, K.; OLIVEIRA, M. C. N. de; BINNECK, E.; FARIAS, J. R. B.; MARIN, S. R. R.; SILVEIRA, C. A.; ABDELNOOR, R. V.; PAIVA, A. A. R.; STOLF, R.; SALINET, L. H.; LEMOS, N. G.; NEUMAIER, N.; NEPOMUCENO, A. L. Avaliação molecular e fisiológica de soja geneticamente modificadas com a construção rd29:DREB1A, de Arabidopsis thaliana, visando tolerância à seca. In: CONGRESSO BRASILEIRO DE GENÉTICA, 52.; CONGRESO DE LA ASOCIACIÓN LATINOAMERICANA DE GENÉTICA, 12., 2006, Foz do Iguaçu. Resumos... Ribeirão Preto, SP: Sociedade Brasileira de Genética, 2006. 1 CD-ROM. Área Plantas - pdf 1136. Biblioteca(s): Embrapa Soja. |
| |
35. | | BINNECK, E.; MORALES, A. M. R.; ALMEIDA, A. M. R.; ARIAS, C. A. A.; SILVEIRA, C. A.; SILVA, J. F. V.; FARIAS, J. R. B.; MOLINA, J. C.; PEDROSO, J. C.; BRETON, M. C.; LEMOS, N. G.; NEUMAIER, N.; MARTINS, P. K.; FUGANTI, R.; STOLF, R.; MARIN, S. R. R.; NEPOMUCENO, A. L. A visual system for DNA sequencing quality control. In: INTERNATIONAL CONFERENCE ON BIOINFOMATICS AND COMPUTATION BIOLOGY, 1., 2003, Ribeirão Preto. Resumos... [S.l.]: CBAB - Centro Brasileiro-Argentino de Biotecnologia, 2003. p. 47. Biblioteca(s): Embrapa Soja. |
| |
36. | | NEPOMUCENO, A. L.; LUGLE, S.; ARIAS, C. A. A.; SILVA, J. F. V.; NEUMAIER, N.; FARIAS, J. R. B.; OYA, T.; MARIN, S. R. R.; BINNECK, E.; LEMOS, N. G.; BRETON, M. C.; MARTINS, P. K.; PEDROSO, J. C.; DELATTRE, N.; CARNEIRO, N.; LEITE, A. Transformação de plantas de soja por biobalística com genes de interesse. In: HOFFMANN-CAMPO, C. B.; SARAIVA, O. F. (Org.). Resultados de pesquisa da Embrapa Soja - 2001: ecofisiologia e biologia molecular. Londrina: Embrapa Soja, 2002. p. 40-42. (Embrapa Soja. Documentos, 198). Biblioteca(s): Embrapa Soja. |
| |
37. | | SILVA, D. C. G. da; STOLF, R.; MORTEL, M. de van; LEMOS, N. G.; SANTOS, J. V. M. dos; PEREIRA, R. M.; BINNECK, E.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; YAMANAKA, N.; MARCELINO, F. C.; BAUM, T. J.; WHITHAM, S. A.; LEMOS, E. G. M.; ABDELNOOR, R. V. Transcritos da soja induzidos durante interação com a ferrugem asiática. In: CONGRESSO BRASILEIRO DE GENÉTICA, 54., 2008, Salvador. Resumos... Salvador: SBG, 2008. p. 319. Biblioteca(s): Embrapa Soja. |
| |
38. | | BINNECK, E.; SILVA, J. F. V.; NEUMAIER, N.; FARIAS, J. R. B.; ARIAS, C. A. A.; ALMEIDA, A. M. R.; MARIN, S. R. R.; WENDLAND, A.; SILVEIRA, C. A. da; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; STOLF, R.; NEPOMUCENO, A. L. VSQual: a visual system to assist the DNA sequencing quality control. In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. p. 249-250. (Embrapa Soja. Documentos, 228). Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. Biblioteca(s): Embrapa Soja. |
| |
Registros recuperados : 38 | |
|
|
| Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
07/04/2004 |
Data da última atualização: |
27/07/2007 |
Autoria: |
BINNECK, E.; SILVA, J. F. V.; NEUMAIER, N.; FARIAS, J. R. B.; ARIAS, C. A. A.; ALMEIDA, A. M. R.; MARIN, S. R. R.; WENDLAND, A.; SILVEIRA, C. A. da; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; STOLF, R.; NEPOMUCENO, A. L. |
Título: |
VSQual: a visual system to assist the DNA sequencing quality control. |
Ano de publicação: |
2004 |
Fonte/Imprenta: |
In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. |
Páginas: |
p. 249-250. |
Série: |
(Embrapa Soja. Documentos, 228). |
Idioma: |
Inglês |
Notas: |
Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. |
Conteúdo: |
A lack of pliant software tools that support small to medium-scale DNA sequencing efforts are a major hindrance to recording and using laboratory workflow information to monitor the overall quality of data production. To solve this task we developed a series of Perl programs that makes up a package called VSQual. This package gives rise to a Web-based graphical interface, which allows us on organizing, using and monitoring the reliability of DNA sequencing workflow data generated by automated sequencers. The package is a flexible pipeline system designed to be accessible and useful to both programmers and nonprogrammers. For each DNA sequence read, the system generates an intuitive report in FASTA colored format with visual quality information of each nucleotide position, based on Phred scores (Ewing et al., 1998, Genome Res. 8:175-85): red stands for Phred score < 10; green stands for Phred score >= 10 and < 20; blue stands for Phred score >= 20 and < 30; and, black stands for Phred score >= 30. Also, on this report, a trace viewer permits an inspection of all chromatogram extension with a graphical view of Phred score for each base. A general report for each 96-well plate is produced on a plate shape figure where the sequence quality is reported as a colored button for each well. This 96-well shape report functions as a fully clickable map, giving access to each sequence on FASTA colored format and trace viewer as described above. On the 96-well report, as default, green stands for an insert fragment of 200 or more bases with Phred score >= 20, yellow stands for a vector fragment of 200 or more bases with Phred score >= 20 if the first statement was not true, and red stands for a lower quality sequence. These parameters (Phred score and fragment size) are adjustable by the VSQual user. VSQual runs on any computer platform for which Perl is available (including Linux, Unix®, Microsoft® Windows®, and Mac® OS) and manages the data from ABI sequencer to obtain the Phred .fasta, fasta.qual and .scf, and Cross_match .fasta.screen output files which is used to build the reports on HTML format that is ready to access through any Web browser. On our lab the reports are automatically produced and placed on a local Intranet, running Apache Web server, to be used by the laboratory people. An example of the VSQual reports is disposed at http://www.cnpso.embrapa.br/bioinformatica. As our lab works based on 96-well plate shape, the scripts are designed to handle 96-well plate data but it can be customized for operate 384-well plate with few script changes. This work was supported by grants from CNPq, PRODETAB, Jircas and Embrapa. MenosA lack of pliant software tools that support small to medium-scale DNA sequencing efforts are a major hindrance to recording and using laboratory workflow information to monitor the overall quality of data production. To solve this task we developed a series of Perl programs that makes up a package called VSQual. This package gives rise to a Web-based graphical interface, which allows us on organizing, using and monitoring the reliability of DNA sequencing workflow data generated by automated sequencers. The package is a flexible pipeline system designed to be accessible and useful to both programmers and nonprogrammers. For each DNA sequence read, the system generates an intuitive report in FASTA colored format with visual quality information of each nucleotide position, based on Phred scores (Ewing et al., 1998, Genome Res. 8:175-85): red stands for Phred score < 10; green stands for Phred score >= 10 and < 20; blue stands for Phred score >= 20 and < 30; and, black stands for Phred score >= 30. Also, on this report, a trace viewer permits an inspection of all chromatogram extension with a graphical view of Phred score for each base. A general report for each 96-well plate is produced on a plate shape figure where the sequence quality is reported as a colored button for each well. This 96-well shape report functions as a fully clickable map, giving access to each sequence on FASTA colored format and trace viewer as described above. On the 96-well report, as default, green s... Mostrar Tudo |
Categoria do assunto: |
-- |
Marc: |
LEADER 03888naa a2200313 a 4500 001 1466824 005 2007-07-27 008 2004 bl uuuu u00u1 u #d 100 1 $aBINNECK, E. 245 $aVSQual$ba visual system to assist the DNA sequencing quality control. 260 $c2004 300 $ap. 249-250. 490 $a(Embrapa Soja. Documentos, 228). 500 $aEditado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. 520 $aA lack of pliant software tools that support small to medium-scale DNA sequencing efforts are a major hindrance to recording and using laboratory workflow information to monitor the overall quality of data production. To solve this task we developed a series of Perl programs that makes up a package called VSQual. This package gives rise to a Web-based graphical interface, which allows us on organizing, using and monitoring the reliability of DNA sequencing workflow data generated by automated sequencers. The package is a flexible pipeline system designed to be accessible and useful to both programmers and nonprogrammers. For each DNA sequence read, the system generates an intuitive report in FASTA colored format with visual quality information of each nucleotide position, based on Phred scores (Ewing et al., 1998, Genome Res. 8:175-85): red stands for Phred score < 10; green stands for Phred score >= 10 and < 20; blue stands for Phred score >= 20 and < 30; and, black stands for Phred score >= 30. Also, on this report, a trace viewer permits an inspection of all chromatogram extension with a graphical view of Phred score for each base. A general report for each 96-well plate is produced on a plate shape figure where the sequence quality is reported as a colored button for each well. This 96-well shape report functions as a fully clickable map, giving access to each sequence on FASTA colored format and trace viewer as described above. On the 96-well report, as default, green stands for an insert fragment of 200 or more bases with Phred score >= 20, yellow stands for a vector fragment of 200 or more bases with Phred score >= 20 if the first statement was not true, and red stands for a lower quality sequence. These parameters (Phred score and fragment size) are adjustable by the VSQual user. VSQual runs on any computer platform for which Perl is available (including Linux, Unix®, Microsoft® Windows®, and Mac® OS) and manages the data from ABI sequencer to obtain the Phred .fasta, fasta.qual and .scf, and Cross_match .fasta.screen output files which is used to build the reports on HTML format that is ready to access through any Web browser. On our lab the reports are automatically produced and placed on a local Intranet, running Apache Web server, to be used by the laboratory people. An example of the VSQual reports is disposed at http://www.cnpso.embrapa.br/bioinformatica. As our lab works based on 96-well plate shape, the scripts are designed to handle 96-well plate data but it can be customized for operate 384-well plate with few script changes. This work was supported by grants from CNPq, PRODETAB, Jircas and Embrapa. 700 1 $aSILVA, J. F. V. 700 1 $aNEUMAIER, N. 700 1 $aFARIAS, J. R. B. 700 1 $aARIAS, C. A. A. 700 1 $aALMEIDA, A. M. R. 700 1 $aMARIN, S. R. R. 700 1 $aWENDLAND, A. 700 1 $aSILVEIRA, C. A. da 700 1 $aMOLINA, J. C. 700 1 $aLEMOS, N. G. 700 1 $aFUGANTI, R. 700 1 $aSTOLF, R. 700 1 $aNEPOMUCENO, A. L. 773 $tIn: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004.
Download
Esconder MarcMostrar Marc Completo |
Registro original: |
Embrapa Soja (CNPSO) |
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
|
Nenhum registro encontrado para a expressão de busca informada. |
|
|