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| Registros recuperados : 38 | |
| 2. |  | LEMOS, N. G.; BRACCINI, A. de L.; ABDELNOOR, R. V.; SUENAGA, K.; YAMANAKA, N. Análise da resistência genética de linhagens de soja contendo genes de resistência para a ferrugem asiática piramidados. In: CONGRESO DE LA SOJA DEL MERCOSUR, 5.; FORO DE LA SOJA ASIA, 1., 2011, Rosário. Un grano: un universo. [Rosário: Asociación de la Cadena de la Soja Argentina], 2011. 4 p. 1 CD-ROM. MERCOSOJA 2011.| Biblioteca(s): Embrapa Soja. |
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| 3. | | LEMOS, N. G.; BRACCINI, A. de L.; ABDELNOOR, R. V.; YAMANAKA, N. Influence of three resistance genes, RPP2, RPP4 and RPP5 on resistance characters against asian soybean rust. In: WORLD SOYBEAN RESEARCH CONFERENCE, 8., 2009, Beijing. Developing a global soy blueprint for a safe secure and sustainable supply: abstracts. Beijing: Chinese Academy of Agricultural Sciences: Institute of Crop Science, 2009. p. 132, ref. P321. WSRC 2009. Editado por Lijuan Qiu, Rongxia Guan, Jian Jin, Qijan Song, Shuntang Guo, Wenbin Li, Yuanchao Wang, Tianfu Han, Xiaobing Liu, Deyue Yu, Lianzhou Jiang, Deliang Peng.| Biblioteca(s): Embrapa Soja. |
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| 5. | | LEMOS, N. G.; LUCCA e BRACCINI, A. de; ABDELNOOR, R. V.; OLIVEIRA, M. C. N. de; SUENAGA, K.; YAMANAKA, N. Characterization of genes Rpp2, Rpp4, and Rpp5 for resistance to soybean rust. Euphytica, Wageningen, v. 182, n. 1, p. 53-64, 2011.| Biblioteca(s): Embrapa Soja. |
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| 6. | | LEMOS, N. G.; BRACCINI, A. de L. e; ABDELNOOR, R. V.; NEVES, M. C.; SUENAGA, K.; YAMANAKA, N. Characterization of genes Rpp2, and Rpp5 conferring resistance to soybean rust. In: AKAMATSU, H.; YAMANAKA, N.; SUENAGA, K. (Ed.). Identification of Stable Resistance to Soybean Rust for South America. Tsukuba: JIRCAS, 2014. (JIRCAS Working Report, 81). p. 79-87.| Biblioteca(s): Embrapa Soja. |
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| 7. | | LEMOS, N. G.; STOLF, R.; MARIN, S. R. R.; POLIZEL, A. M.; BENEVENTI, M. A.; YAMANAKA, N.; NEPOMUCENO, A. L. Caracterização molecular pela técnica de PCR em tempo real de soja geneticamente modificada. In: CONGRESO DE SOJA DEL MERCOSUR, 3., 2006, Rosário. Mercosoja 2006: mesas científico-técnicas, resúmenes expandidos / comunicaciones. Rosário: Associación de la Cadena de Soja Argentina, 2006. p. 287-289.| Biblioteca(s): Embrapa Soja. |
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| 8. | | YAMANAKA, N.; LEMOS, N. G.; UNO, M.; AKAMATSU, H.; YAMAOKA, Y.; ABDELNOOR, R. V.; BRACCINI, A. L. e; SUENAGA, K. Resistance to Asian Soybean Rust in soybean lines with the pyramided three Rpp genes. Crop Breeding and Applied Biotechnology, Viçosa, v. 13, n. 1, p. 75-82, Mar. 2013.| Biblioteca(s): Embrapa Soja. |
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| 9. | | MNARTINS, T. B.; TORRES, A. R.; LEMOS, N. G.; SANTOS, M. A. dos; GRUNVALD, A. K.; HUNGRIA, M. Validação da metodologia de caracterização molecular de cultivares de soja por meio de marcadores microssatélites. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 30.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 14.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 12.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 9.; SIMPÓSIO SOBRE SELÊNIO NO BRASIL, 1., 2012, Maceió. A responsabilidade socioambiental da pesquisa agrícola: anais. Viçosa: SBCS, 2012. 4 p. Trab. 360. 1 CD-ROM. Fertbio.| Biblioteca(s): Embrapa Soja. |
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| 10. | | MORALES, A. M. R.; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; NEPOMUCENO, A. L.; NEUMAIER, N.; FARIAS, J. R. B.; BINNECK, E. Análise dos genes expressos em raízes de soja submetidas a déficit hídrico. In: SIMPOSIO DE INICIAÇÃO CIENTÍFICA DA UNIFIL, 12., 2004, Londrina. Resumos... Londrina: UniFil, 2004. 1 CD-ROM.| Biblioteca(s): Embrapa Soja. |
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| 11. | | TORRES, A. R.; GRUNVALD, A. K.; MARTINS, T. B.; SANTOS, M. A.; LEMOS, N. G.; SILVA, L. A. S.; HUNGRIA, M. Inferência sobre a estrutura populacional da soja comercializada no Brasil, usando dados genotípicos, para uso no mapeamento associativo de alto teor de proteína e maior eficiência na fixação biológica de nitrogênio. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: resumos. Brasília, DF: Embrapa, 2012. p. 160, res. 274.| Biblioteca(s): Embrapa Soja. |
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| 12. | | TORRES, A. R.; GRUNVALD, A. K.; MARTINS, T. B.; SANTOS, M. A.; LEMOS, N. G.; SILVA, L. A. S.; HUNGRIA, M. Inferência sobre a estrutura populacional da soja comercializada no Brasil, usando dados genotípicos, para uso no mapeamento associativo de alto teor de proteína e maior eficiência na fixação biológica de nitrogênio. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: anais. Brasília, DF: Embrapa, 2012. 4 p. 1 CD-ROM.| Biblioteca(s): Embrapa Soja. |
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| 13. | | LEMOS, N. G.; MOLINA, J. C.; STOLF, R.; MORALES, A. M. R.; MARIN, S. R. R.; BINNECK, E, FARIAS, J. R. B.; NEUMAIER, N.; NEPOMUCENO, A. L. Expressão de aquaporinas e outros genes em raízes de soja sob condições de deficiência hídrica. In: CONGRESSO NACIONAL DE GENÉTICA , 49., 2003, Águas de Lindóia. A dupla hélice do DNA: [resumos]. [S. l.]: SBG, 2003. 1 CD-ROM. Resumo Área GP pdf. 069.| Biblioteca(s): Embrapa Soja. |
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| 14. | | MOLINA, J. C.; LEMOS, N. G.; MORALES, A. M.; MARIN, S. R. R.; BINNECK, E.; FARIAS, J. R. B.; NEUMAIER, N.; NEPOMUCENO, A. L. Expressão gênica em raízes de soja durante o déficit hídrico. In: CONGRESSO NACIONAL DE GENÉTICA , 49., 2003, Águas de Lindóia. A dupla hélice do DNA: [resumos]. [S. l.]: SBG, 2003. 1 CD-ROM. Resumo Área GP pdf. 068.| Biblioteca(s): Embrapa Soja. |
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| 15. | | TORRES, A. R.; GRUNVALD, A. K.; MARTINS, T. B.; SANTOS, M. A. dos; LEMOS, N. G.; SILVA, L. A. S.; HUNGRIA, M. Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content. Scientia Agricola, Piracicaba, v. 72, n. 1, p. 47-52, Jan./Feb. 2015.| Biblioteca(s): Embrapa Soja. |
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| 16. | | YAMANAKA, N.; LEMOS, N. G.; UNO, M.; AKAMATSU, H.; YAMAOKA, Y.; ABDELNOOR, R. V.; BRACCINI, A. de L. e; SUENAGA, K. Resistence to asian soybean rust in soybean lines carrying Rpp2, Rpp4, and Rpp 5. In: AKAMATSU, H.; YAMANAKA, N.; SUENAGA, K. (Ed.). Identification of Stable Resistance to Soybean Rust for South America. Tsukuba: JIRCAS, 2014. (JIRCAS Working Report, 81). p. 88-95.| Biblioteca(s): Embrapa Soja. |
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| 17. | | YAMANAKA, N.; LEMOS, N. G.; AKAMATSU, H.; YAMAOKA, Y.; SILVA, D. C. G.; PASSIANOTTO, A. L. de L.; ABDELNOOR, R. V.; SOARES, R. M.; SUENAGA, K. Soybean breeding materials useful for resistance to soybean rust in Brazil. Japan Agricultural Research Quarterly, Tsukuba, v. 45, n. 4, p. 385-395, 2011.| Biblioteca(s): Embrapa Soja. |
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| 18. | | STOLF, R.; MEDRI, M. E.; FARIAS, J. R. B.; BINNECK, E.; LEMOS N. G.; BENEVENTI, M. A.; MARIN, S. R. R.; SILVEIRA, C. A.; BROGIN, R. L.; YAMANAKA, N.; LEMOS, E. G. M.; NEPOMUCENO, A. L. Análise de expressão por PCR em tempo real e clonagem de genes induzidos sob condições de seca, em duas cultivares de soja, Glycine max (L.) Merrill. In: REUNIÃO DE PESQUISA DE SOJA DA REGIÃO CENTRAL DO BRASIL, 27., 2005. Cornélio Procópio. Resumos... Londrina: Embrapa Soja, 2005. p. 86-87. (Embrapa Soja. Documentos, 257). Organizado por Odilon Ferreira Saraiva, Janete Lasso Ortiz, Simone Ery Grosskopf.| Biblioteca(s): Embrapa Soja. |
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| 19. | | STOLF-MOREIRA, R.; MEDRI, M. E.; NEUMAIER, N.; LEMOS, N. G.; BROGIN, R. L.; MARCELINO, F. C.; OLIVEIRA, M. C. N. de; FARIAS, J. R. B.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Cloning and quantitative expression analysis of drought-induced genes in soybean. Genetics and Molecular Research, Ribeirão Preto, v. 9, n. 2, p. 858-867, 2010.| Biblioteca(s): Embrapa Soja. |
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| 20. | | SILVA, D. C. G.; MORTEL, M. van de; LEMOS, N. G.; STOLF, R.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; YAMANAKA, N.; BAUM, T. J.; WHITHAM, S. A.; ABDELNOOR, R. Characterization of EST libraries from soybean plants involved in resistant and susceptible interactions with the asian soybean rust pathogen. In: THE INTERNATIONAL CONFERENCE ON THE STATUS OF PLANT & ANIMAL GENOME RESEARCH, 16., 2008, San Diego. Final abstracts guide. [S.l.], 2008, p. 220, P405.| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 38 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
07/04/2004 |
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Data da última atualização: |
27/07/2007 |
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Autoria: |
BINNECK, E.; SILVA, J. F. V.; NEUMAIER, N.; FARIAS, J. R. B.; ARIAS, C. A. A.; ALMEIDA, A. M. R.; MARIN, S. R. R.; WENDLAND, A.; SILVEIRA, C. A. da; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; STOLF, R.; NEPOMUCENO, A. L. |
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Título: |
VSQual: a visual system to assist the DNA sequencing quality control. |
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Ano de publicação: |
2004 |
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Fonte/Imprenta: |
In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. |
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Páginas: |
p. 249-250. |
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Série: |
(Embrapa Soja. Documentos, 228). |
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Idioma: |
Inglês |
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Notas: |
Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. |
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Conteúdo: |
A lack of pliant software tools that support small to medium-scale DNA sequencing efforts are a major hindrance to recording and using laboratory workflow information to monitor the overall quality of data production. To solve this task we developed a series of Perl programs that makes up a package called VSQual. This package gives rise to a Web-based graphical interface, which allows us on organizing, using and monitoring the reliability of DNA sequencing workflow data generated by automated sequencers. The package is a flexible pipeline system designed to be accessible and useful to both programmers and nonprogrammers. For each DNA sequence read, the system generates an intuitive report in FASTA colored format with visual quality information of each nucleotide position, based on Phred scores (Ewing et al., 1998, Genome Res. 8:175-85): red stands for Phred score < 10; green stands for Phred score >= 10 and < 20; blue stands for Phred score >= 20 and < 30; and, black stands for Phred score >= 30. Also, on this report, a trace viewer permits an inspection of all chromatogram extension with a graphical view of Phred score for each base. A general report for each 96-well plate is produced on a plate shape figure where the sequence quality is reported as a colored button for each well. This 96-well shape report functions as a fully clickable map, giving access to each sequence on FASTA colored format and trace viewer as described above. On the 96-well report, as default, green stands for an insert fragment of 200 or more bases with Phred score >= 20, yellow stands for a vector fragment of 200 or more bases with Phred score >= 20 if the first statement was not true, and red stands for a lower quality sequence. These parameters (Phred score and fragment size) are adjustable by the VSQual user. VSQual runs on any computer platform for which Perl is available (including Linux, Unix®, Microsoft® Windows®, and Mac® OS) and manages the data from ABI sequencer to obtain the Phred .fasta, fasta.qual and .scf, and Cross_match .fasta.screen output files which is used to build the reports on HTML format that is ready to access through any Web browser. On our lab the reports are automatically produced and placed on a local Intranet, running Apache Web server, to be used by the laboratory people. An example of the VSQual reports is disposed at http://www.cnpso.embrapa.br/bioinformatica. As our lab works based on 96-well plate shape, the scripts are designed to handle 96-well plate data but it can be customized for operate 384-well plate with few script changes. This work was supported by grants from CNPq, PRODETAB, Jircas and Embrapa. MenosA lack of pliant software tools that support small to medium-scale DNA sequencing efforts are a major hindrance to recording and using laboratory workflow information to monitor the overall quality of data production. To solve this task we developed a series of Perl programs that makes up a package called VSQual. This package gives rise to a Web-based graphical interface, which allows us on organizing, using and monitoring the reliability of DNA sequencing workflow data generated by automated sequencers. The package is a flexible pipeline system designed to be accessible and useful to both programmers and nonprogrammers. For each DNA sequence read, the system generates an intuitive report in FASTA colored format with visual quality information of each nucleotide position, based on Phred scores (Ewing et al., 1998, Genome Res. 8:175-85): red stands for Phred score < 10; green stands for Phred score >= 10 and < 20; blue stands for Phred score >= 20 and < 30; and, black stands for Phred score >= 30. Also, on this report, a trace viewer permits an inspection of all chromatogram extension with a graphical view of Phred score for each base. A general report for each 96-well plate is produced on a plate shape figure where the sequence quality is reported as a colored button for each well. This 96-well shape report functions as a fully clickable map, giving access to each sequence on FASTA colored format and trace viewer as described above. On the 96-well report, as default, green s... Mostrar Tudo |
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Categoria do assunto: |
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Marc: |
LEADER 03888naa a2200313 a 4500
001 1466824
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100 1 $aBINNECK, E.
245 $aVSQual$ba visual system to assist the DNA sequencing quality control.
260 $c2004
300 $ap. 249-250.
490 $a(Embrapa Soja. Documentos, 228).
500 $aEditado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi.
520 $aA lack of pliant software tools that support small to medium-scale DNA sequencing efforts are a major hindrance to recording and using laboratory workflow information to monitor the overall quality of data production. To solve this task we developed a series of Perl programs that makes up a package called VSQual. This package gives rise to a Web-based graphical interface, which allows us on organizing, using and monitoring the reliability of DNA sequencing workflow data generated by automated sequencers. The package is a flexible pipeline system designed to be accessible and useful to both programmers and nonprogrammers. For each DNA sequence read, the system generates an intuitive report in FASTA colored format with visual quality information of each nucleotide position, based on Phred scores (Ewing et al., 1998, Genome Res. 8:175-85): red stands for Phred score < 10; green stands for Phred score >= 10 and < 20; blue stands for Phred score >= 20 and < 30; and, black stands for Phred score >= 30. Also, on this report, a trace viewer permits an inspection of all chromatogram extension with a graphical view of Phred score for each base. A general report for each 96-well plate is produced on a plate shape figure where the sequence quality is reported as a colored button for each well. This 96-well shape report functions as a fully clickable map, giving access to each sequence on FASTA colored format and trace viewer as described above. On the 96-well report, as default, green stands for an insert fragment of 200 or more bases with Phred score >= 20, yellow stands for a vector fragment of 200 or more bases with Phred score >= 20 if the first statement was not true, and red stands for a lower quality sequence. These parameters (Phred score and fragment size) are adjustable by the VSQual user. VSQual runs on any computer platform for which Perl is available (including Linux, Unix®, Microsoft® Windows®, and Mac® OS) and manages the data from ABI sequencer to obtain the Phred .fasta, fasta.qual and .scf, and Cross_match .fasta.screen output files which is used to build the reports on HTML format that is ready to access through any Web browser. On our lab the reports are automatically produced and placed on a local Intranet, running Apache Web server, to be used by the laboratory people. An example of the VSQual reports is disposed at http://www.cnpso.embrapa.br/bioinformatica. As our lab works based on 96-well plate shape, the scripts are designed to handle 96-well plate data but it can be customized for operate 384-well plate with few script changes. This work was supported by grants from CNPq, PRODETAB, Jircas and Embrapa.
700 1 $aSILVA, J. F. V.
700 1 $aNEUMAIER, N.
700 1 $aFARIAS, J. R. B.
700 1 $aARIAS, C. A. A.
700 1 $aALMEIDA, A. M. R.
700 1 $aMARIN, S. R. R.
700 1 $aWENDLAND, A.
700 1 $aSILVEIRA, C. A. da
700 1 $aMOLINA, J. C.
700 1 $aLEMOS, N. G.
700 1 $aFUGANTI, R.
700 1 $aSTOLF, R.
700 1 $aNEPOMUCENO, A. L.
773 $tIn: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004.
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