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| Registros recuperados : 38 | |
| 2. |  | LEMOS, N. G.; BRACCINI, A. de L.; ABDELNOOR, R. V.; SUENAGA, K.; YAMANAKA, N. Análise da resistência genética de linhagens de soja contendo genes de resistência para a ferrugem asiática piramidados. In: CONGRESO DE LA SOJA DEL MERCOSUR, 5.; FORO DE LA SOJA ASIA, 1., 2011, Rosário. Un grano: un universo. [Rosário: Asociación de la Cadena de la Soja Argentina], 2011. 4 p. 1 CD-ROM. MERCOSOJA 2011.| Biblioteca(s): Embrapa Soja. |
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| 3. | | LEMOS, N. G.; BRACCINI, A. de L.; ABDELNOOR, R. V.; YAMANAKA, N. Influence of three resistance genes, RPP2, RPP4 and RPP5 on resistance characters against asian soybean rust. In: WORLD SOYBEAN RESEARCH CONFERENCE, 8., 2009, Beijing. Developing a global soy blueprint for a safe secure and sustainable supply: abstracts. Beijing: Chinese Academy of Agricultural Sciences: Institute of Crop Science, 2009. p. 132, ref. P321. WSRC 2009. Editado por Lijuan Qiu, Rongxia Guan, Jian Jin, Qijan Song, Shuntang Guo, Wenbin Li, Yuanchao Wang, Tianfu Han, Xiaobing Liu, Deyue Yu, Lianzhou Jiang, Deliang Peng.| Biblioteca(s): Embrapa Soja. |
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| 5. | | LEMOS, N. G.; LUCCA e BRACCINI, A. de; ABDELNOOR, R. V.; OLIVEIRA, M. C. N. de; SUENAGA, K.; YAMANAKA, N. Characterization of genes Rpp2, Rpp4, and Rpp5 for resistance to soybean rust. Euphytica, Wageningen, v. 182, n. 1, p. 53-64, 2011.| Biblioteca(s): Embrapa Soja. |
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| 6. | | LEMOS, N. G.; BRACCINI, A. de L. e; ABDELNOOR, R. V.; NEVES, M. C.; SUENAGA, K.; YAMANAKA, N. Characterization of genes Rpp2, and Rpp5 conferring resistance to soybean rust. In: AKAMATSU, H.; YAMANAKA, N.; SUENAGA, K. (Ed.). Identification of Stable Resistance to Soybean Rust for South America. Tsukuba: JIRCAS, 2014. (JIRCAS Working Report, 81). p. 79-87.| Biblioteca(s): Embrapa Soja. |
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| 7. | | LEMOS, N. G.; STOLF, R.; MARIN, S. R. R.; POLIZEL, A. M.; BENEVENTI, M. A.; YAMANAKA, N.; NEPOMUCENO, A. L. Caracterização molecular pela técnica de PCR em tempo real de soja geneticamente modificada. In: CONGRESO DE SOJA DEL MERCOSUR, 3., 2006, Rosário. Mercosoja 2006: mesas científico-técnicas, resúmenes expandidos / comunicaciones. Rosário: Associación de la Cadena de Soja Argentina, 2006. p. 287-289.| Biblioteca(s): Embrapa Soja. |
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| 8. | | YAMANAKA, N.; LEMOS, N. G.; UNO, M.; AKAMATSU, H.; YAMAOKA, Y.; ABDELNOOR, R. V.; BRACCINI, A. L. e; SUENAGA, K. Resistance to Asian Soybean Rust in soybean lines with the pyramided three Rpp genes. Crop Breeding and Applied Biotechnology, Viçosa, v. 13, n. 1, p. 75-82, Mar. 2013.| Biblioteca(s): Embrapa Soja. |
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| 9. | | MNARTINS, T. B.; TORRES, A. R.; LEMOS, N. G.; SANTOS, M. A. dos; GRUNVALD, A. K.; HUNGRIA, M. Validação da metodologia de caracterização molecular de cultivares de soja por meio de marcadores microssatélites. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 30.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 14.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 12.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 9.; SIMPÓSIO SOBRE SELÊNIO NO BRASIL, 1., 2012, Maceió. A responsabilidade socioambiental da pesquisa agrícola: anais. Viçosa: SBCS, 2012. 4 p. Trab. 360. 1 CD-ROM. Fertbio.| Biblioteca(s): Embrapa Soja. |
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| 10. | | MORALES, A. M. R.; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; NEPOMUCENO, A. L.; NEUMAIER, N.; FARIAS, J. R. B.; BINNECK, E. Análise dos genes expressos em raízes de soja submetidas a déficit hídrico. In: SIMPOSIO DE INICIAÇÃO CIENTÍFICA DA UNIFIL, 12., 2004, Londrina. Resumos... Londrina: UniFil, 2004. 1 CD-ROM.| Biblioteca(s): Embrapa Soja. |
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| 11. | | TORRES, A. R.; GRUNVALD, A. K.; MARTINS, T. B.; SANTOS, M. A.; LEMOS, N. G.; SILVA, L. A. S.; HUNGRIA, M. Inferência sobre a estrutura populacional da soja comercializada no Brasil, usando dados genotípicos, para uso no mapeamento associativo de alto teor de proteína e maior eficiência na fixação biológica de nitrogênio. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: resumos. Brasília, DF: Embrapa, 2012. p. 160, res. 274.| Biblioteca(s): Embrapa Soja. |
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| 12. | | TORRES, A. R.; GRUNVALD, A. K.; MARTINS, T. B.; SANTOS, M. A.; LEMOS, N. G.; SILVA, L. A. S.; HUNGRIA, M. Inferência sobre a estrutura populacional da soja comercializada no Brasil, usando dados genotípicos, para uso no mapeamento associativo de alto teor de proteína e maior eficiência na fixação biológica de nitrogênio. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: anais. Brasília, DF: Embrapa, 2012. 4 p. 1 CD-ROM.| Biblioteca(s): Embrapa Soja. |
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| 13. | | LEMOS, N. G.; MOLINA, J. C.; STOLF, R.; MORALES, A. M. R.; MARIN, S. R. R.; BINNECK, E, FARIAS, J. R. B.; NEUMAIER, N.; NEPOMUCENO, A. L. Expressão de aquaporinas e outros genes em raízes de soja sob condições de deficiência hídrica. In: CONGRESSO NACIONAL DE GENÉTICA , 49., 2003, Águas de Lindóia. A dupla hélice do DNA: [resumos]. [S. l.]: SBG, 2003. 1 CD-ROM. Resumo Área GP pdf. 069.| Biblioteca(s): Embrapa Soja. |
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| 14. | | MOLINA, J. C.; LEMOS, N. G.; MORALES, A. M.; MARIN, S. R. R.; BINNECK, E.; FARIAS, J. R. B.; NEUMAIER, N.; NEPOMUCENO, A. L. Expressão gênica em raízes de soja durante o déficit hídrico. In: CONGRESSO NACIONAL DE GENÉTICA , 49., 2003, Águas de Lindóia. A dupla hélice do DNA: [resumos]. [S. l.]: SBG, 2003. 1 CD-ROM. Resumo Área GP pdf. 068.| Biblioteca(s): Embrapa Soja. |
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| 15. | | TORRES, A. R.; GRUNVALD, A. K.; MARTINS, T. B.; SANTOS, M. A. dos; LEMOS, N. G.; SILVA, L. A. S.; HUNGRIA, M. Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content. Scientia Agricola, Piracicaba, v. 72, n. 1, p. 47-52, Jan./Feb. 2015.| Biblioteca(s): Embrapa Soja. |
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| 16. | | YAMANAKA, N.; LEMOS, N. G.; UNO, M.; AKAMATSU, H.; YAMAOKA, Y.; ABDELNOOR, R. V.; BRACCINI, A. de L. e; SUENAGA, K. Resistence to asian soybean rust in soybean lines carrying Rpp2, Rpp4, and Rpp 5. In: AKAMATSU, H.; YAMANAKA, N.; SUENAGA, K. (Ed.). Identification of Stable Resistance to Soybean Rust for South America. Tsukuba: JIRCAS, 2014. (JIRCAS Working Report, 81). p. 88-95.| Biblioteca(s): Embrapa Soja. |
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| 17. | | YAMANAKA, N.; LEMOS, N. G.; AKAMATSU, H.; YAMAOKA, Y.; SILVA, D. C. G.; PASSIANOTTO, A. L. de L.; ABDELNOOR, R. V.; SOARES, R. M.; SUENAGA, K. Soybean breeding materials useful for resistance to soybean rust in Brazil. Japan Agricultural Research Quarterly, Tsukuba, v. 45, n. 4, p. 385-395, 2011.| Biblioteca(s): Embrapa Soja. |
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| 18. | | STOLF, R.; MEDRI, M. E.; FARIAS, J. R. B.; BINNECK, E.; LEMOS N. G.; BENEVENTI, M. A.; MARIN, S. R. R.; SILVEIRA, C. A.; BROGIN, R. L.; YAMANAKA, N.; LEMOS, E. G. M.; NEPOMUCENO, A. L. Análise de expressão por PCR em tempo real e clonagem de genes induzidos sob condições de seca, em duas cultivares de soja, Glycine max (L.) Merrill. In: REUNIÃO DE PESQUISA DE SOJA DA REGIÃO CENTRAL DO BRASIL, 27., 2005. Cornélio Procópio. Resumos... Londrina: Embrapa Soja, 2005. p. 86-87. (Embrapa Soja. Documentos, 257). Organizado por Odilon Ferreira Saraiva, Janete Lasso Ortiz, Simone Ery Grosskopf.| Biblioteca(s): Embrapa Soja. |
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| 19. | | STOLF-MOREIRA, R.; MEDRI, M. E.; NEUMAIER, N.; LEMOS, N. G.; BROGIN, R. L.; MARCELINO, F. C.; OLIVEIRA, M. C. N. de; FARIAS, J. R. B.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Cloning and quantitative expression analysis of drought-induced genes in soybean. Genetics and Molecular Research, Ribeirão Preto, v. 9, n. 2, p. 858-867, 2010.| Biblioteca(s): Embrapa Soja. |
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| 20. | | SILVA, D. C. G.; MORTEL, M. van de; LEMOS, N. G.; STOLF, R.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; YAMANAKA, N.; BAUM, T. J.; WHITHAM, S. A.; ABDELNOOR, R. Characterization of EST libraries from soybean plants involved in resistant and susceptible interactions with the asian soybean rust pathogen. In: THE INTERNATIONAL CONFERENCE ON THE STATUS OF PLANT & ANIMAL GENOME RESEARCH, 16., 2008, San Diego. Final abstracts guide. [S.l.], 2008, p. 220, P405.| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 38 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
07/04/2004 |
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Data da última atualização: |
27/07/2007 |
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Autoria: |
BINNECK, E.; SILVA, J. F. V.; NEUMAIER, N.; FARIAS, J. R. B.; ARIAS, C. A. A.; ALMEIDA, A. M. R.; MARIN, S. R. R.; WENDLAND, A.; SILVEIRA, C. A. da; MOLINA, J. C.; LEMOS, N. G.; FUGANTI, R.; STOLF, R.; NEPOMUCENO, A. L. |
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Título: |
Bioinformatics tools for sequence analysis and annotation applied to soybean functional genome. |
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Ano de publicação: |
2004 |
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Fonte/Imprenta: |
In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. |
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Páginas: |
p. 248-249. |
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Série: |
(Embrapa Soja. Documentos, 228). |
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Idioma: |
Inglês |
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Notas: |
Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. |
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Conteúdo: |
Worldwide functional genomics studies are making an important role on biotechnology for the identification of genes that can be use in the improvement of specific biological processes in plants. Large-scale gene discovery projects like that depend on high accuracy of the data. The data should not only be trustworthy but should be correctly annotated for various features it contains. In this work we report a bioinformatics system designed to process and annotate the expressed sequence tags (ESTs) obtained by the project Functional Genome of Soybean Roots at Embrapa Soybean (http://www.cnpso.embrapa.br/bioinformatica). The system is made of Perl and PHP scripts, which performs the automated sequence analysis and support the annotation process based on a MySQL database. Various Perl scripts was written to assist the sequence analysis process that includes basecalling, clustering and assembling the reads, filtering of contaminating, repetitive and low quality sequences, identification of sequence features, BLASTing and reports generation. BLAST (Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402) outputs are processed and disposed on a way that is easily accessed by the personal that performs the massive handle of the data for annotation. Also, PHP scripts was written to make a friendly annotation interface through dynamical Web pages that perform the database operations needed for the complete annotation of the genes, whish comprise data retrieval aided by query searches linked to key words, data insertion, update, and generation of intuitive reports describing the results. These tools are helping to direct our work on identification, cloning and characterization of genes and regulatory sequences potentially useful in the improvement of soybean through genetic engineering. As results nearly 8,000 ESTs was obtained form cDNA clones derived from soybean roots in drought stress and nematode infection conditions. Consensus sequences are being functionally annotated and used to construct cDNA microarrays that will be useful for analyze gene expression under a broad variety of conditions. Initially we are studying drought stress and nematode infection conditions. Analysis of interactions of soybean roots with this defiance conditions will be used do identify new possible sources of resistance and tolerance. Candidate genes will be deeply studied and can be used on the production of transgenic plants. This work was supported by grants from CNPq, PRODETAB, Jircas and Embrapa. MenosWorldwide functional genomics studies are making an important role on biotechnology for the identification of genes that can be use in the improvement of specific biological processes in plants. Large-scale gene discovery projects like that depend on high accuracy of the data. The data should not only be trustworthy but should be correctly annotated for various features it contains. In this work we report a bioinformatics system designed to process and annotate the expressed sequence tags (ESTs) obtained by the project Functional Genome of Soybean Roots at Embrapa Soybean (http://www.cnpso.embrapa.br/bioinformatica). The system is made of Perl and PHP scripts, which performs the automated sequence analysis and support the annotation process based on a MySQL database. Various Perl scripts was written to assist the sequence analysis process that includes basecalling, clustering and assembling the reads, filtering of contaminating, repetitive and low quality sequences, identification of sequence features, BLASTing and reports generation. BLAST (Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402) outputs are processed and disposed on a way that is easily accessed by the personal that performs the massive handle of the data for annotation. Also, PHP scripts was written to make a friendly annotation interface through dynamical Web pages that perform the database operations needed for the complete annotation of the genes, whish comprise data retrieval aided by query searches li... Mostrar Tudo |
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100 1 $aBINNECK, E.
245 $aBioinformatics tools for sequence analysis and annotation applied to soybean functional genome.
260 $c2004
300 $ap. 248-249.
490 $a(Embrapa Soja. Documentos, 228).
500 $aEditado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi.
520 $aWorldwide functional genomics studies are making an important role on biotechnology for the identification of genes that can be use in the improvement of specific biological processes in plants. Large-scale gene discovery projects like that depend on high accuracy of the data. The data should not only be trustworthy but should be correctly annotated for various features it contains. In this work we report a bioinformatics system designed to process and annotate the expressed sequence tags (ESTs) obtained by the project Functional Genome of Soybean Roots at Embrapa Soybean (http://www.cnpso.embrapa.br/bioinformatica). The system is made of Perl and PHP scripts, which performs the automated sequence analysis and support the annotation process based on a MySQL database. Various Perl scripts was written to assist the sequence analysis process that includes basecalling, clustering and assembling the reads, filtering of contaminating, repetitive and low quality sequences, identification of sequence features, BLASTing and reports generation. BLAST (Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402) outputs are processed and disposed on a way that is easily accessed by the personal that performs the massive handle of the data for annotation. Also, PHP scripts was written to make a friendly annotation interface through dynamical Web pages that perform the database operations needed for the complete annotation of the genes, whish comprise data retrieval aided by query searches linked to key words, data insertion, update, and generation of intuitive reports describing the results. These tools are helping to direct our work on identification, cloning and characterization of genes and regulatory sequences potentially useful in the improvement of soybean through genetic engineering. As results nearly 8,000 ESTs was obtained form cDNA clones derived from soybean roots in drought stress and nematode infection conditions. Consensus sequences are being functionally annotated and used to construct cDNA microarrays that will be useful for analyze gene expression under a broad variety of conditions. Initially we are studying drought stress and nematode infection conditions. Analysis of interactions of soybean roots with this defiance conditions will be used do identify new possible sources of resistance and tolerance. Candidate genes will be deeply studied and can be used on the production of transgenic plants. This work was supported by grants from CNPq, PRODETAB, Jircas and Embrapa.
700 1 $aSILVA, J. F. V.
700 1 $aNEUMAIER, N.
700 1 $aFARIAS, J. R. B.
700 1 $aARIAS, C. A. A.
700 1 $aALMEIDA, A. M. R.
700 1 $aMARIN, S. R. R.
700 1 $aWENDLAND, A.
700 1 $aSILVEIRA, C. A. da
700 1 $aMOLINA, J. C.
700 1 $aLEMOS, N. G.
700 1 $aFUGANTI, R.
700 1 $aSTOLF, R.
700 1 $aNEPOMUCENO, A. L.
773 $tIn: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004.
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