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Registro Completo |
Biblioteca(s): |
Embrapa Cerrados. |
Data corrente: |
12/12/2018 |
Data da última atualização: |
12/12/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
STAFUZZA, N. B.; SILVA, R. M. de O.; PERIPOLLI, E.; BEZERRA, L. A. F.; LOBO, R. B.; MAGNABOSCO, C. de U.; DI CROCE, F.; OSTERSTOCK, J.; MUNARI, D. P.; LOURENCO, D. A. L.; BALDI, F. |
Afiliação: |
Nedenia Bonvino Stafuzza, UNESP; Rafael Medeiros de Oliveira Silva, University of Georgia; ELISA PERIPOLLI, UNESP; Luiz Antônio Framartino Bezerra, USP; Raysildo Barbosa Lôbo, Associaçao Nacional dos Criadores e Pesquisadores; CLAUDIO DE ULHOA MAGNABOSCO, CPAC; Fernando Di Croce, Zoetis; Jason Osterstock, Zoetis; Danísio Prado Munari, UNESP; Daniela A. Lino Lourenco, University of Georgia; Fernando Baldi, UNESP. |
Título: |
Genome-wide association study provides insights into genes related with horn development in Nelore beef cattle. |
Ano de publicação: |
2018 |
Fonte/Imprenta: |
PLoS ONE, v. 13, n. 8, e0202978, August 30, 2018. |
DOI: |
https://doi.org/10.1371/journal.pone.0202978 |
Idioma: |
Inglês |
Conteúdo: |
Abstract The causal mutation for polledness in Nelore (Bos taurus indicus) breed seems to have appeared first in Brazil in 1957. The expression of the polled trait is known to be ruled by a few groups of alleles in taurine breeds; however, the genetic basis of this trait in indicine cattle is still unclear. The aim of this study was to identify genomic regions associated with the hornless trait in a commercial Nelore population. A total of 107,294 animals had phenotypes recorded and 2,238 were genotyped/imputed for 777k SNP. The weighted single-step approach for genome-wide association study (WssGWAS) was used to estimate the SNP effects and variances accounted for by 1 Mb sliding SNP windows. A centromeric region of chromosome 1 with 3.11 Mb size (BTA1: 878,631?3,987,104 bp) was found to be associated with hornless in the studied population. A total of 28 protein-coding genes are mapped in this region, including the taurine Polled locus and the IFNAR1, IFNAR2, IFNGR2, KRTAP11-1, MIS18A, OLIG1, OLIG2, and SOD1 genes, which expression can be related to the horn formation as described in literature. The functional enrichment analysis by DAVID tool revealed cytokine-cytokine receptor interaction, JAK-STAT signaling, natural killer cell mediated cytotoxicity, and osteoclast differentiation pathways as significant (P < 0.05). In addition, a runs of homozygosity (ROH) analysis identified a ROH island in polled animals with 2.47 Mb inside the region identified by WssGWAS. Polledness in Nelore cattle is associated with one region in the genome with 3.1 Mb size in chromosome 1. Several genes are harbored in this region, and they may act together in the determination of the polled/horned phenotype. Fine mapping the locus responsible for polled trait in Nelore breed and the identification of the molecular mechanisms regulating the horn growth deserve further investigation. MenosAbstract The causal mutation for polledness in Nelore (Bos taurus indicus) breed seems to have appeared first in Brazil in 1957. The expression of the polled trait is known to be ruled by a few groups of alleles in taurine breeds; however, the genetic basis of this trait in indicine cattle is still unclear. The aim of this study was to identify genomic regions associated with the hornless trait in a commercial Nelore population. A total of 107,294 animals had phenotypes recorded and 2,238 were genotyped/imputed for 777k SNP. The weighted single-step approach for genome-wide association study (WssGWAS) was used to estimate the SNP effects and variances accounted for by 1 Mb sliding SNP windows. A centromeric region of chromosome 1 with 3.11 Mb size (BTA1: 878,631?3,987,104 bp) was found to be associated with hornless in the studied population. A total of 28 protein-coding genes are mapped in this region, including the taurine Polled locus and the IFNAR1, IFNAR2, IFNGR2, KRTAP11-1, MIS18A, OLIG1, OLIG2, and SOD1 genes, which expression can be related to the horn formation as described in literature. The functional enrichment analysis by DAVID tool revealed cytokine-cytokine receptor interaction, JAK-STAT signaling, natural killer cell mediated cytotoxicity, and osteoclast differentiation pathways as significant (P < 0.05). In addition, a runs of homozygosity (ROH) analysis identified a ROH island in polled animals with 2.47 Mb inside the region identified by WssGWAS. Pollednes... Mostrar Tudo |
Thesagro: |
Bos Indicus; Gado Nelore; Mutação. |
Categoria do assunto: |
G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/188280/1/Genome-wide-association-study-provides-apagar.pdf
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Marc: |
LEADER 02768naa a2200289 a 4500 001 2101347 005 2018-12-12 008 2018 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1371/journal.pone.0202978$2DOI 100 1 $aSTAFUZZA, N. B. 245 $aGenome-wide association study provides insights into genes related with horn development in Nelore beef cattle.$h[electronic resource] 260 $c2018 520 $aAbstract The causal mutation for polledness in Nelore (Bos taurus indicus) breed seems to have appeared first in Brazil in 1957. The expression of the polled trait is known to be ruled by a few groups of alleles in taurine breeds; however, the genetic basis of this trait in indicine cattle is still unclear. The aim of this study was to identify genomic regions associated with the hornless trait in a commercial Nelore population. A total of 107,294 animals had phenotypes recorded and 2,238 were genotyped/imputed for 777k SNP. The weighted single-step approach for genome-wide association study (WssGWAS) was used to estimate the SNP effects and variances accounted for by 1 Mb sliding SNP windows. A centromeric region of chromosome 1 with 3.11 Mb size (BTA1: 878,631?3,987,104 bp) was found to be associated with hornless in the studied population. A total of 28 protein-coding genes are mapped in this region, including the taurine Polled locus and the IFNAR1, IFNAR2, IFNGR2, KRTAP11-1, MIS18A, OLIG1, OLIG2, and SOD1 genes, which expression can be related to the horn formation as described in literature. The functional enrichment analysis by DAVID tool revealed cytokine-cytokine receptor interaction, JAK-STAT signaling, natural killer cell mediated cytotoxicity, and osteoclast differentiation pathways as significant (P < 0.05). In addition, a runs of homozygosity (ROH) analysis identified a ROH island in polled animals with 2.47 Mb inside the region identified by WssGWAS. Polledness in Nelore cattle is associated with one region in the genome with 3.1 Mb size in chromosome 1. Several genes are harbored in this region, and they may act together in the determination of the polled/horned phenotype. Fine mapping the locus responsible for polled trait in Nelore breed and the identification of the molecular mechanisms regulating the horn growth deserve further investigation. 650 $aBos Indicus 650 $aGado Nelore 650 $aMutação 700 1 $aSILVA, R. M. de O. 700 1 $aPERIPOLLI, E. 700 1 $aBEZERRA, L. A. F. 700 1 $aLOBO, R. B. 700 1 $aMAGNABOSCO, C. de U. 700 1 $aDI CROCE, F. 700 1 $aOSTERSTOCK, J. 700 1 $aMUNARI, D. P. 700 1 $aLOURENCO, D. A. L. 700 1 $aBALDI, F. 773 $tPLoS ONE$gv. 13, n. 8, e0202978, August 30, 2018.
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Registros recuperados : 5 | |
1. | | SAGGIN JÚNIOR, O. J.; BENTO, R. A.; SILVA, E. M. R. da; PITARD, R. M.; STRALIOTTO, R.; VOLPON, A. G. T.; LANDA, F. H. T. G. de; TAVARES, S. R. de L. Efeito de bactérias fixadoras de nitrogênio e fungos micorrízicos arbusculares no crescimento de leguminosas arbóreas em solo contaminado com petróleo. Seropédica: Embrapa Agrobiologia, 2006. 4 p. Trabalho apresentado na XXVII Reunião Brasileira de Fertilidade do Solo e Nutrição de Plantas, XI Reunião Brasileira sobre Micorrizas, IX Simpósio Brasileiro de Microbiologia do Solo; VI Reunião Brasileira de Biologia do Solo, Bonito/MS,...Biblioteca(s): Embrapa Agrobiologia. |
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2. | | SAGGIN JÚNIOR, O. J.; BENTO, R. A.; SILVA, E. M. R. da; PITARD, R. M.; STRALIOTTO, R.; VOLPON, A. G. T.; LANDA, F. H. T. G. de; TAVARES, S. R. de L. Efeito de bactérias fixadoras de nitrogênio e fungos micorrízicos arbusculares no crescimento de leguminosas arbóreas em solo contaminado com petróleo. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 27., REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 11., SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 9., REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 6., 2006, Bonito, MS. A busca das raízes: anais... Bonito: SBM; Dourados: Embrapa Agropecuária Oeste, 2006. 4 p. 1 CD-ROM. (Embrapa Agropecuária Oeste. Documentos, 82).Biblioteca(s): Embrapa Agrobiologia. |
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3. | | BENTO, R. A.; SAGGIN JUNIOR, O. J.; PITARD, R. M.; STRALIOTTO, R.; SILVA, E. M. R. da; TAVARES, S. R. de L.; LANDA, F. H. T. G. de; MARTINS, L. F.; VOLPON, A. G. T. Selection of leguminous trees associated with symbiont microorganisms for phytoremediation of petroleum-contaminated soil. Water Air Soil Pollution, v. 223, p. 5659-5671, 2012.Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
Biblioteca(s): Embrapa Agrobiologia. |
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4. | | BENTO, R. A.; SAGGIN-JÚNIOR, O. J.; PITARD, R. M.; STRALIOTTO, R.; SILVA, E. M. R. da; TAVARES, S. R. de L.; LANDA, F. H. T. G. de; MARTINS, L. M.; VOLPON, A. G. T. Selection of leguminous trees associated with symbiont microorganisms for phytoremediation of petroleum-contaminated soil. Water Air Soil Pollution, v. 223, p. 5659-5671, Jun. 2012.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Solos. |
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5. | | BENTO, R. A.; FERREIRA, T. C.; SIMÕES, M. A.; MIRANDA, R. A. de; SAGGIN JÚNIOR, O. J.; PITARD, R. M.; STRALIOTTO, R.; SILVA, E. M. R. da; TAVARES, S. R. de L.; LANDA, F. H. T. G. de; VOLPON, A. G. T. Desenvolvimento de mudas de sabiá e acácia micorrizadas e noduladas em solo contaminado por petróleo condicionado por dois hidrorretentores. In: CONGRESSO BRASILEIRO DE CIÊNCIA DO SOLO, 31., 2007, Gramado. Conquistas e desafios da ciência do solo brasileira: anais. Porto Alegre: SBCS, 2007. 5 p. 1 CD-ROM. Parceria: UFRRJ, Embrapa Solos, CENPES/PetrobrasTipo: Artigo em Anais de Congresso / Nota Técnica | Circulação/Nível: -- - -- |
Biblioteca(s): Embrapa Agrobiologia. |
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Registros recuperados : 5 | |
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