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Registro Completo |
Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
Data corrente: |
08/10/2020 |
Data da última atualização: |
01/12/2020 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
DE LA HIGUERA, I.; KASUN, G. W.; TORRANCE, E. L.; PRATT, A. A.; MALUENDA, A.; COLOMBET, J.; BISSEUX, M.; RAVET, V.; DAYARAM, A.; STAINTON, D.; KRABERGER, S.; SAWAR-REZA, P.; GOLDSTIEN, S.; BRISKIE, J. V.; WHITE, R.; TAYLOR, H.; GOMEZ, C.; AINLEY, D. G.; HARDING, J. S.; FONTENELE, R. S.; SCHRECK, J.; RIBEIRO, S. G.; OSWALD, S. A.; ARNOLD, J. M.; ENAULT, F.; VARSANI, A.; STEDMAN, K. M. |
Afiliação: |
IGNACIO DE LA HIGUERA, PORTLAND STATE UNIVERSITUY, USA; GEORGE W. KASUN, PORTLAND STATE UNIVERSITY, USA; ELLIS L. TORRANCE, PORTLAND STATE UNIVERSITY, USA; ALYSSA A. PRATT, PORTLAND STATE UNIVERSITY, USA; AMBERLEE MALUENDA, PORTLAND STATE UNIVERSITY, USA; JONATHAN COLOMBET, UNIVERSITÉ CLERMONT AUVERGNE, FRANCE; MAXIME BISSEUX, UNIVERSITÉ CLERMONT AUVERGNE, FRANCE; VIVIANE RAVET, UNIVERSITÉ CLERMONT AUVERGNE, FRANCE; ANISHA DAYARAM, CHARITÉ-UNIVERSITÄTSMEDIZIN, GERMANY; DAISY STAINTON, UNIVERSITY OF ARKANSAS SYSTEM, USA; SIMONA KRABERGER, ARIZONA STATE UNIVERSITY, USA; PEYMAN SAWAR-REZA, UNIVERSITY OF CANTERBURY, NEW ZEALAND; SHARYN GOLDSTIEN, UNIVERSITY OF CANTERBURY, NEW ZEALAND; JAMES V. BRISKIE, UNIVERSITY OF CANTERBURY, NEW ZEALAND; ROBYN WHITE, UNIVERSITY OF CANTERBURY, NEW ZEALAND; HELEN TAYLOR, UNIVERSITY OF OTAGO, NEW ZEALAND; CHRISTOPHER GOMEZ, KOBE UNIVERSITY, JAPAN; DAVID G. AINLEY, HT HARVEY AND AZZOCIATES, USA; JON S. HARDING, UNIVERSITY OF CANTERBURY, NEW ZEALAND; RAFAELA S. FONTENELE, ARIZONA STATE UNIVERSITY, USA; JOSHUA SCHRECK, ARIZONA STATE UNIVERSITY, USA; SIMONE DA GRACA RIBEIRO, Cenargen; STEPHEN A. OSWALD, PENNSYLVANIA STATE UNIVERSITY, USA; JENNIFER M. ARNOLD, PENNSYLVANIA STATE UNIVERSITY, USA; FRANÇOIS ENAULT, UNIVERSITÉ CLERMONT AUVERGNE, FRANCE; ARVIND VARSANI, ARIZONA STATE UNIVERSITY, USA; KENNETH M. STEDMAN, PORTLAND STATE UNIVERSITY, USA. |
Título: |
Unveiling crucivirus diversity by mining metagenomic data. |
Ano de publicação: |
2020 |
Fonte/Imprenta: |
MBio, v. 11, n. 5, e01410-20, 2020. |
DOI: |
https://doi.org/10.1128/mBio.01410-20 |
Idioma: |
Inglês |
Palavras-Chave: |
CRESS-DNA viruses; Crucivirus; Environmental virology; Recombination; Virus evolution. |
Thesaurus Nal: |
Gene transfer. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/216483/1/mBio-2020-de-la-Higuera-e01410-20.full.pdf
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Marc: |
LEADER 01337naa a2200505 a 4500 001 2125352 005 2020-12-01 008 2020 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1128/mBio.01410-20$2DOI 100 1 $aDE LA HIGUERA, I. 245 $aUnveiling crucivirus diversity by mining metagenomic data.$h[electronic resource] 260 $c2020 650 $aGene transfer 653 $aCRESS-DNA viruses 653 $aCrucivirus 653 $aEnvironmental virology 653 $aRecombination 653 $aVirus evolution 700 1 $aKASUN, G. W. 700 1 $aTORRANCE, E. L. 700 1 $aPRATT, A. A. 700 1 $aMALUENDA, A. 700 1 $aCOLOMBET, J. 700 1 $aBISSEUX, M. 700 1 $aRAVET, V. 700 1 $aDAYARAM, A. 700 1 $aSTAINTON, D. 700 1 $aKRABERGER, S. 700 1 $aSAWAR-REZA, P. 700 1 $aGOLDSTIEN, S. 700 1 $aBRISKIE, J. V. 700 1 $aWHITE, R. 700 1 $aTAYLOR, H. 700 1 $aGOMEZ, C. 700 1 $aAINLEY, D. G. 700 1 $aHARDING, J. S. 700 1 $aFONTENELE, R. S. 700 1 $aSCHRECK, J. 700 1 $aRIBEIRO, S. G. 700 1 $aOSWALD, S. A. 700 1 $aARNOLD, J. M. 700 1 $aENAULT, F. 700 1 $aVARSANI, A. 700 1 $aSTEDMAN, K. M. 773 $tMBio$gv. 11, n. 5, e01410-20, 2020.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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Registro Completo
Biblioteca(s): |
Embrapa Agropecuária Oeste; Embrapa Soja. |
Data corrente: |
22/11/2016 |
Data da última atualização: |
13/12/2016 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
A - 1 |
Autoria: |
ORMEÑO-ORRILLO, E.; GOMES, D. F.; CERRO, P. del; VASCONCELOS, A. T. R.; CANCHAYA, C.; ALMEIDA, L. G. P.; MERCANTE, F. M.; JAVIER OLLERO, F.; MEGÍAS, M.; HUNGRIA, M. |
Afiliação: |
ERNESTO ORMEÑO-ORRILLO, Universidad Nacional Agraria La Molina; DOUGLAS FABIANO GOMES, CAPES; PABLO DEL CERRO, Universidad de Sevilla; ANA TEREZA RIBEIRO VASCONCELOS, LNCC; CARLOS CANCHAYA, University of Vigo; LUIZ GONZAGA PAULA ALMEIDA, LNCC; FABIO MARTINS MERCANTE, CPAO; FRANCISCO JAVIER OLLERO, Universidad de Sevilla; MANUEL MEGÍAS, Universidad de Sevilla; MARIANGELA HUNGRIA DA CUNHA, CNPSO. |
Título: |
Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. |
Ano de publicação: |
2016 |
Fonte/Imprenta: |
BMC Genomics, v. 17, n. 534, 2016. |
DOI: |
10.1186/s12864-016-2859-z |
Idioma: |
Português |
Conteúdo: |
Common bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar to already described tropici pSyms, including five copies of nodD and three of nodA genes. R. leucaenae CFN 299T is capable of synthesizing Nod factors in the absence of flavonoids when submitted to osmotic stress, indicating that under abiotic stress the regulation of nod genes might be different.
A detailed study of the genes putatively related to stress tolerance in R. leucaenae highlighted an intricate pattern comprising a variety of mechanisms that are probably orchestrated to tolerate the stressful conditions to which the strains are submitted on a daily basis. The capacity to synthesize Nod factors under abiotic stress might follow the same regulatory pathways as in CIAT 899T and may help both to improve bacterial survival and to expand host range to guarantee the perpetuation of the symbiosis. MenosCommon bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar t... Mostrar Tudo |
Palavras-Chave: |
Fixação biológica de nitrogênio. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/150393/1/2016OrmenoOrrilloetalBMCGenomics.pdf
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Marc: |
LEADER 03133naa a2200253 a 4500 001 2058569 005 2016-12-13 008 2016 bl uuuu u00u1 u #d 024 7 $a10.1186/s12864-016-2859-z$2DOI 100 1 $aORMEÑO-ORRILLO, E. 245 $aGenome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8$bsearching for genes related to a successful symbiotic performance under stressful conditions.$h[electronic resource] 260 $c2016 520 $aCommon bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar to already described tropici pSyms, including five copies of nodD and three of nodA genes. R. leucaenae CFN 299T is capable of synthesizing Nod factors in the absence of flavonoids when submitted to osmotic stress, indicating that under abiotic stress the regulation of nod genes might be different. A detailed study of the genes putatively related to stress tolerance in R. leucaenae highlighted an intricate pattern comprising a variety of mechanisms that are probably orchestrated to tolerate the stressful conditions to which the strains are submitted on a daily basis. The capacity to synthesize Nod factors under abiotic stress might follow the same regulatory pathways as in CIAT 899T and may help both to improve bacterial survival and to expand host range to guarantee the perpetuation of the symbiosis. 653 $aFixação biológica de nitrogênio 700 1 $aGOMES, D. F. 700 1 $aCERRO, P. del 700 1 $aVASCONCELOS, A. T. R. 700 1 $aCANCHAYA, C. 700 1 $aALMEIDA, L. G. P. 700 1 $aMERCANTE, F. M. 700 1 $aJAVIER OLLERO, F. 700 1 $aMEGÍAS, M. 700 1 $aHUNGRIA, M. 773 $tBMC Genomics$gv. 17, n. 534, 2016.
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Embrapa Agropecuária Oeste (CPAO) |
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