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 | Acesso ao texto completo restrito à biblioteca da Embrapa Arroz e Feijão. Para informações adicionais entre em contato com cnpaf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
01/09/2014 |
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Data da última atualização: |
09/12/2014 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
MÜLLER, B. S. de F.; SAKAMOTO, T.; MENEZES, I. P. P. de; PRADO, G. S.; MARTINS, W. S.; BRONDANI, C.; BARROS, E. G. de; VIANELLO, R. P. |
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Afiliação: |
BÁRBARA SALOMÃO DE FARIA MÜLLER, UFV; TETSU SAKAMOTO, UFMG; IVANDILSON PESSOA PINTO DE MENEZES, INSTITUTO FEDERAL GOIANO, Urutaí-GO; GUILHERME SOUZA PRADO, bolsista CNPAF; WELLINGTON SANTOS MARTINS, UFG; CLAUDIO BRONDANI, CNPAF; EVERALDO GONÇALVES DE BARROS, UNIVERSIDADE CATÓLICA DE BRASÍLIA; ROSANA PEREIRA VIANELLO, CNPAF. |
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Título: |
Analysis of BAC-end sequences in common bean (Phaseolus vulgaris L.) towards the development and characterization of long motifs SSRs. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
Plant Molecular Biology, Dordrecht, v. 86, n. 4/5, p. 455-470, Nov. 2014. |
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DOI: |
10.1007/s11103-014-0240-7 |
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Idioma: |
Inglês |
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Conteúdo: |
The increasing volume of genomic data on the Phaseolus vulgaris species have contributed to its importance as a model genetic species and positively affected the investigation of other legumes of scientific and economic value. To expand and gain a more in-depth knowledge of the common bean genome, the ends of a number of bacterial artificial chromosome (BAC) were sequenced, annotated and the presence of repetitive sequences was determined. In total, 52,270 BESs (BAC-end sequences), equivalent to 32 Mbp (~6 %) of the genome, were processed. In total, 3,789 BES-SSRs were identified, with a distribution of one SSR (simple sequence repeat) per 8.36 kbp and 2,000 were suitable for the development of SSRs, of which 194 were evaluated in low-resolution screening. From 40 BES-SSRs based on long motifs SSRs (≥trinucleotides) analyzed in high-resolution genotyping, 34 showed an equally good amplification for the Andean and for the Mesoamerican genepools, exhibiting an average gene diversity (H E) of 0.490 and 5.59 alleles/locus, of which six classified as Class I showed a H E ≥ 0.7. The PCoA and structure analysis allowed to discriminate the gene pools (K = 2, FST = 0.733). From the 52,270 BESs, 2 % corresponded to transcription factors and 3 % to transposable elements. Putative functions for 24,321 BESs were identified and for 19,363 were assigned functional categories (gene ontology). This study identified highly polymorphic BES-SSRs containing tri- to hexanucleotides motifs and bringing together relevant genetic characteristics useful for breeding programs. Additionally, the BESs were incorporated into the international genome-sequencing project for the common bean. MenosThe increasing volume of genomic data on the Phaseolus vulgaris species have contributed to its importance as a model genetic species and positively affected the investigation of other legumes of scientific and economic value. To expand and gain a more in-depth knowledge of the common bean genome, the ends of a number of bacterial artificial chromosome (BAC) were sequenced, annotated and the presence of repetitive sequences was determined. In total, 52,270 BESs (BAC-end sequences), equivalent to 32 Mbp (~6 %) of the genome, were processed. In total, 3,789 BES-SSRs were identified, with a distribution of one SSR (simple sequence repeat) per 8.36 kbp and 2,000 were suitable for the development of SSRs, of which 194 were evaluated in low-resolution screening. From 40 BES-SSRs based on long motifs SSRs (≥trinucleotides) analyzed in high-resolution genotyping, 34 showed an equally good amplification for the Andean and for the Mesoamerican genepools, exhibiting an average gene diversity (H E) of 0.490 and 5.59 alleles/locus, of which six classified as Class I showed a H E ≥ 0.7. The PCoA and structure analysis allowed to discriminate the gene pools (K = 2, FST = 0.733). From the 52,270 BESs, 2 % corresponded to transcription factors and 3 % to transposable elements. Putative functions for 24,321 BESs were identified and for 19,363 were assigned functional categories (gene ontology). This study identified highly polymorphic BES-SSRs containing tri- to hexanucleotides mo... Mostrar Tudo |
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Thesagro: |
Feijão; Genética molecular; Phaseolus vulgaris. |
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Thesaurus Nal: |
Beans; Fabaceae; Genomics; Microsatellite repeats; Molecular genetics; Transcription factors; Transposons. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 02734naa a2200337 a 4500
001 1993888
005 2014-12-09
008 2014 bl uuuu u00u1 u #d
024 7 $a10.1007/s11103-014-0240-7$2DOI
100 1 $aMÜLLER, B. S. de F.
245 $aAnalysis of BAC-end sequences in common bean (Phaseolus vulgaris L.) towards the development and characterization of long motifs SSRs.$h[electronic resource]
260 $c2014
520 $aThe increasing volume of genomic data on the Phaseolus vulgaris species have contributed to its importance as a model genetic species and positively affected the investigation of other legumes of scientific and economic value. To expand and gain a more in-depth knowledge of the common bean genome, the ends of a number of bacterial artificial chromosome (BAC) were sequenced, annotated and the presence of repetitive sequences was determined. In total, 52,270 BESs (BAC-end sequences), equivalent to 32 Mbp (~6 %) of the genome, were processed. In total, 3,789 BES-SSRs were identified, with a distribution of one SSR (simple sequence repeat) per 8.36 kbp and 2,000 were suitable for the development of SSRs, of which 194 were evaluated in low-resolution screening. From 40 BES-SSRs based on long motifs SSRs (≥trinucleotides) analyzed in high-resolution genotyping, 34 showed an equally good amplification for the Andean and for the Mesoamerican genepools, exhibiting an average gene diversity (H E) of 0.490 and 5.59 alleles/locus, of which six classified as Class I showed a H E ≥ 0.7. The PCoA and structure analysis allowed to discriminate the gene pools (K = 2, FST = 0.733). From the 52,270 BESs, 2 % corresponded to transcription factors and 3 % to transposable elements. Putative functions for 24,321 BESs were identified and for 19,363 were assigned functional categories (gene ontology). This study identified highly polymorphic BES-SSRs containing tri- to hexanucleotides motifs and bringing together relevant genetic characteristics useful for breeding programs. Additionally, the BESs were incorporated into the international genome-sequencing project for the common bean.
650 $aBeans
650 $aFabaceae
650 $aGenomics
650 $aMicrosatellite repeats
650 $aMolecular genetics
650 $aTranscription factors
650 $aTransposons
650 $aFeijão
650 $aGenética molecular
650 $aPhaseolus vulgaris
700 1 $aSAKAMOTO, T.
700 1 $aMENEZES, I. P. P. de
700 1 $aPRADO, G. S.
700 1 $aMARTINS, W. S.
700 1 $aBRONDANI, C.
700 1 $aBARROS, E. G. de
700 1 $aVIANELLO, R. P.
773 $tPlant Molecular Biology, Dordrecht$gv. 86, n. 4/5, p. 455-470, Nov. 2014.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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| Acesso ao texto completo restrito à biblioteca da Embrapa Milho e Sorgo. Para informações adicionais entre em contato com cnpms.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Milho e Sorgo. |
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Data corrente: |
08/11/2022 |
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Data da última atualização: |
27/09/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
SILVA, K. J. da; GUIMARÃES, C. T.; SOUSA, S. M. de; BERNARDINO, K. da C.; TRINDADE, R. dos S.; QUEIROZ, V. A. V.; CONCEIÇÃO, R. R. P. da; GUILHEN, J. H. S.; OLIVEIRA, N. T. de; DAMASCENO, C. M. B.; NODA, R. W.; DIAS, L. A. dos S.; GUIMARAES, L. J. M.; MELO, J. de O.; PASTINA, M. M. |
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Afiliação: |
KARLA JORGE DA SILVA, Universidade Federal de Viçosa; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; SYLVIA MORAIS DE SOUSA TINOCO, CNPMS; KARINE DA COSTA BERNARDINO, Universidade Federal de Viçosa; ROBERTO DOS SANTOS TRINDADE, CNPMS; VALERIA APARECIDA VIEIRA QUEIROZ, CNPMS; RENATA REGINA PEREIRA DA CONCEIÇÃO; JOSÉ HENRIQUE SOLER GUILHEN; NATANAEL TAVARES DE OLIVEIRA; CYNTHIA MARIA BORGES DAMASCENO, CNPMS; ROBERTO WILLIANS NODA, CNPMS; LUIZ ANTÔNIO DOS SANTOS DIAS, Universidade Federal de Viçosa; LAURO JOSE MOREIRA GUIMARAES, CNPMS; JANAÍNA DE OLIVEIRA MELO, Universidade Federal dos Vales do Jequitinhonha e Mucuri; MARIA MARTA PASTINA, CNPMS. |
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Título: |
A genome-wide association study investigating fumonisin contamination in a panel of tropical maize elite lines. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Euphytica, v. 218, article 130, 2022. |
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DOI: |
https://doi.org/10.1007/s10681-022-03082-0 |
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Idioma: |
Inglês |
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Conteúdo: |
Native genetic resistance is an effective and environmental-friendly alternative to control fungal infections and reduce fumonisin content in maize kernels. Marker-assisted selection can accelerate the genetic gains over breeding cycles. This study aimed to identify genomic regions and candidate genes associated to fumonisin contamination in a panel of tropical maize elite lines. A total of 205 inbred lines were grown under field conditions in Brazil to measure the fumonisin content in grains. The lines were genotyped by sequencing, generating 385,654 high-quality polymorphic single-nucleotide polymorphisms (SNPs). The Genome Wide Association Study (GWAS) identified 40 SNPs located on 19 genomic regions associated to the fumonisin contamination, of which seven were coincident with other studies. Six candidate genes localized within these QTL regions shared functions related with pathogen resistance, six shared functions related with pathogen resistance, including one associated with Fusarium ear rot also identified at bin 10.03 in a previous study. Tropical maize lines resistant to fumonisin contamination were at low frequency in the Embrapa?s panel, but most of the resistant lines shared more than 73% of the resistance alleles at SNP loci associated with the trait. Thus, favorable alleles could be potentially used to improve resistance to fumonisin contamination in maize. |
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Palavras-Chave: |
Fumonisina. |
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Thesagro: |
Fusarium; Gene; Micotoxina; Milho. |
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Categoria do assunto: |
G Melhoramento Genético |
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Marc: |
LEADER 02458naa a2200361 a 4500
001 2148120
005 2023-09-27
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s10681-022-03082-0$2DOI
100 1 $aSILVA, K. J. da
245 $aA genome-wide association study investigating fumonisin contamination in a panel of tropical maize elite lines.$h[electronic resource]
260 $c2022
520 $aNative genetic resistance is an effective and environmental-friendly alternative to control fungal infections and reduce fumonisin content in maize kernels. Marker-assisted selection can accelerate the genetic gains over breeding cycles. This study aimed to identify genomic regions and candidate genes associated to fumonisin contamination in a panel of tropical maize elite lines. A total of 205 inbred lines were grown under field conditions in Brazil to measure the fumonisin content in grains. The lines were genotyped by sequencing, generating 385,654 high-quality polymorphic single-nucleotide polymorphisms (SNPs). The Genome Wide Association Study (GWAS) identified 40 SNPs located on 19 genomic regions associated to the fumonisin contamination, of which seven were coincident with other studies. Six candidate genes localized within these QTL regions shared functions related with pathogen resistance, six shared functions related with pathogen resistance, including one associated with Fusarium ear rot also identified at bin 10.03 in a previous study. Tropical maize lines resistant to fumonisin contamination were at low frequency in the Embrapa?s panel, but most of the resistant lines shared more than 73% of the resistance alleles at SNP loci associated with the trait. Thus, favorable alleles could be potentially used to improve resistance to fumonisin contamination in maize.
650 $aFusarium
650 $aGene
650 $aMicotoxina
650 $aMilho
653 $aFumonisina
700 1 $aGUIMARÃES, C. T.
700 1 $aSOUSA, S. M. de
700 1 $aBERNARDINO, K. da C.
700 1 $aTRINDADE, R. dos S.
700 1 $aQUEIROZ, V. A. V.
700 1 $aCONCEIÇÃO, R. R. P. da
700 1 $aGUILHEN, J. H. S.
700 1 $aOLIVEIRA, N. T. de
700 1 $aDAMASCENO, C. M. B.
700 1 $aNODA, R. W.
700 1 $aDIAS, L. A. dos S.
700 1 $aGUIMARAES, L. J. M.
700 1 $aMELO, J. de O.
700 1 $aPASTINA, M. M.
773 $tEuphytica$gv. 218, article 130, 2022.
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Embrapa Milho e Sorgo (CNPMS) |
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