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Registro Completo |
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
29/11/2019 |
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Data da última atualização: |
13/03/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
BERNARDES; NASCIMENTO, G. B. do; SAVEGNAGO, R. P.; BUZANSKAS, M. E.; WATANABE, R. N.; REGITANO, L. C. de A.; COUTINHO, L. L.; GONDRO, C.; MUNARI, D. P. |
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Afiliação: |
Priscila Arrigucci Bernardes, UNESP; Guilherme Batista do Nascimento, Centro Universitário de Adamantina; Rodrigo Pelicioni Savegnago, Instituto de Zootecnia; Marcos Eli Buzanskas, Universidade Federal da Paraiba; Rafael Nakamura Watanabe, UNESP; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; Luiz Lehmann Coutinho, USP; Cedric Gondro, Michigan State University; Danísio Prado Munari, UNESP. |
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Título: |
Evaluation of imputation accuracy using the combination of two high-density panels in nelore beef cattle. |
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Ano de publicação: |
2019 |
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Fonte/Imprenta: |
Scientific Reports, v. 9, 17920, 2019. |
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DOI: |
doi.org/10.1038/s41598-019-54382-w |
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Idioma: |
Inglês |
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Conteúdo: |
this study compared imputation from lower-density commercial and customized panels to high-density panels and a combined panel (Illumina and Affymetrix) in Nelore beef cattle. Additionally, linkage disequilibrium and haplotype block conformation were estimated in individual high-density panels and compared with corresponding values in the combined panel after imputation. Overall, 814 animals were genotyped using BovineHD BeadChip (IllumHD), and 93 of these animals were also genotyped using the Axion Genome-Wide BOS 1 Array Plate (AffyHD). In general, customization considering linkage disequilibrium and minor allele frequency had the highest accuracies. The IllumHD panel had higher values of linkage disequilibrium for short distances between SNPs than AffyHD and the combined panel. The combined panel had an increased number of small haplotype blocks. The use of a combined panel is recommended due to its increased density and number of haplotype blocks, which in turn increase the probability of a marker being close to a quantitative trait locus of interest. Considering common SNPs between IllumHD and AffyHD for the customization of a low-density panel increases the imputation accuracy for IllumHD, AffyHD and the combined panel. |
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Thesagro: |
Bovino; Gado de Corte. |
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Thesaurus Nal: |
Animal breeding; Beef cattle. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/205859/1/Arrigucci-et-al-2019EvaluationOfImputationAccuracy.pdf
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Marc: |
LEADER 02062naa a2200277 a 4500
001 2115563
005 2023-03-13
008 2019 bl uuuu u00u1 u #d
024 7 $adoi.org/10.1038/s41598-019-54382-w$2DOI
100 1 $aBERNARDES
245 $aEvaluation of imputation accuracy using the combination of two high-density panels in nelore beef cattle.$h[electronic resource]
260 $c2019
520 $athis study compared imputation from lower-density commercial and customized panels to high-density panels and a combined panel (Illumina and Affymetrix) in Nelore beef cattle. Additionally, linkage disequilibrium and haplotype block conformation were estimated in individual high-density panels and compared with corresponding values in the combined panel after imputation. Overall, 814 animals were genotyped using BovineHD BeadChip (IllumHD), and 93 of these animals were also genotyped using the Axion Genome-Wide BOS 1 Array Plate (AffyHD). In general, customization considering linkage disequilibrium and minor allele frequency had the highest accuracies. The IllumHD panel had higher values of linkage disequilibrium for short distances between SNPs than AffyHD and the combined panel. The combined panel had an increased number of small haplotype blocks. The use of a combined panel is recommended due to its increased density and number of haplotype blocks, which in turn increase the probability of a marker being close to a quantitative trait locus of interest. Considering common SNPs between IllumHD and AffyHD for the customization of a low-density panel increases the imputation accuracy for IllumHD, AffyHD and the combined panel.
650 $aAnimal breeding
650 $aBeef cattle
650 $aBovino
650 $aGado de Corte
700 1 $aNASCIMENTO, G. B. do
700 1 $aSAVEGNAGO, R. P.
700 1 $aBUZANSKAS, M. E.
700 1 $aWATANABE, R. N.
700 1 $aREGITANO, L. C. de A.
700 1 $aCOUTINHO, L. L.
700 1 $aGONDRO, C.
700 1 $aMUNARI, D. P.
773 $tScientific Reports$gv. 9, 17920, 2019.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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Registro Completo
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Biblioteca(s): |
Embrapa Pesca e Aquicultura. |
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Data corrente: |
02/09/2019 |
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Data da última atualização: |
14/02/2020 |
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Tipo da produção científica: |
Artigo em Anais de Congresso |
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Autoria: |
SILVA, P. R. da; ABREU, J. L. da S.; CUNHA, M. K.; BARBOSA, C. F.; NUNES, A. G.; TELLES, R. S. M. de S. |
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Afiliação: |
POLIANA RAMOS DA SILVA, UNIVERSIDADE CATÓLICA DO TOCANTINS; JOAO LUCAS DA SILVA ABREU, UNIVERSIDADE CATÓLICA DO TOCANTINS; MARCELO KONSGEN CUNHA, UNIVERSIDADE CATÓLICA DO TOCANTINS; CLAUDIO FRANCA BARBOSA, CNPASA; ALEX GONÇALVES NUNES, UNIVERSIDADE CATÓLICA DO TOCANTINS; REYNALDO SERGIO MADRUGA DE SOUZA TELLES, UNIVERSIDADE CATÓLICA DO TOCANTINS. |
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Título: |
Efeito da calagem e adubação fosfatada na produtividade inicial do capim Andropogon gayanus cv. Planaltina no município de Palmas - TO. |
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Ano de publicação: |
2019 |
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Fonte/Imprenta: |
In: CONGRESSO BRASILEIRO DE ZOOTECNIA, 29., 2019, Uberaba. Tecnologias que alimentam o mundo: anais eletrônicos. Uberaba: Sociedade Brasileira de Zootecnia, 2019. |
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Idioma: |
Português |
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Notas: |
Zootec 2019. |
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Conteúdo: |
The effect of liming and phosphorus fertilization on the initial productivity of Andropogon gayanus cv. Planaltina in the municipality of Palmas - TO. A completely randomized design was used: DIC, which consisted of five treatments and four repetitions. The following treatments were used: T1: Control, T2: Elevation of Saturation by Bases at 60% + Zero Phosphorus, T3: Elevation of Ca and Mg + Zero of Phosphorus T4: Elevation of Saturation by Bases at 60% + 50 kg ha-1 of phosphorus, T5: increase in the content of Ca and Mg + 50 kg ha-1 of phosphorus. There was a significant effect on the initial yield of dry matter where phosphorus was applied. However, when comparing the different liming methods in isolation, no significant effect was obtained. It is concluded, therefore, that although adapted to low fertility soils, Andropogon gayanus cv. Planaltina responds well to the application of lime and fertilizers. |
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Palavras-Chave: |
Palmas-TO. |
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Thesagro: |
Acidez do Solo; Adubação; Andropogon Gayanus; Calagem; Capim Andropogon; Cerrado; Fósforo; Pastagem. |
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Categoria do assunto: |
P Recursos Naturais, Ciências Ambientais e da Terra |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/201510/1/CNPASA-2019-zootec.pdf
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Marc: |
LEADER 01889nam a2200289 a 4500
001 2111817
005 2020-02-14
008 2019 bl uuuu u00u1 u #d
100 1 $aSILVA, P. R. da
245 $aEfeito da calagem e adubação fosfatada na produtividade inicial do capim Andropogon gayanus cv. Planaltina no município de Palmas - TO.$h[electronic resource]
260 $aIn: CONGRESSO BRASILEIRO DE ZOOTECNIA, 29., 2019, Uberaba. Tecnologias que alimentam o mundo: anais eletrônicos. Uberaba: Sociedade Brasileira de Zootecnia$c2019
500 $aZootec 2019.
520 $aThe effect of liming and phosphorus fertilization on the initial productivity of Andropogon gayanus cv. Planaltina in the municipality of Palmas - TO. A completely randomized design was used: DIC, which consisted of five treatments and four repetitions. The following treatments were used: T1: Control, T2: Elevation of Saturation by Bases at 60% + Zero Phosphorus, T3: Elevation of Ca and Mg + Zero of Phosphorus T4: Elevation of Saturation by Bases at 60% + 50 kg ha-1 of phosphorus, T5: increase in the content of Ca and Mg + 50 kg ha-1 of phosphorus. There was a significant effect on the initial yield of dry matter where phosphorus was applied. However, when comparing the different liming methods in isolation, no significant effect was obtained. It is concluded, therefore, that although adapted to low fertility soils, Andropogon gayanus cv. Planaltina responds well to the application of lime and fertilizers.
650 $aAcidez do Solo
650 $aAdubação
650 $aAndropogon Gayanus
650 $aCalagem
650 $aCapim Andropogon
650 $aCerrado
650 $aFósforo
650 $aPastagem
653 $aPalmas-TO
700 1 $aABREU, J. L. da S.
700 1 $aCUNHA, M. K.
700 1 $aBARBOSA, C. F.
700 1 $aNUNES, A. G.
700 1 $aTELLES, R. S. M. de S.
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Registro original: |
Embrapa Pesca e Aquicultura (CNPASA) |
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