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| Registros recuperados : 41 | |
| 8. |  | CINTRA, L. C.; NAKAI, A. M.; CORREA, J. L. Methods, procedures and techniques used in constructing AgroICT. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Information and communication technologies and their relations with agriculture. Brasília, DF: Embrapa, 2016. ch. 15, p. 287-294.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 9. | | CINTRA, L. C.; NAKAI, A. M.; CORREA, J. L. Métodos, procedimentos e técnicas utilizadas na construção de AgroTIC. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Tecnologias da informação e comunicação e suas relações com a agricultura. Brasília, DF: Embrapa, 2014. Cap. 15. p. 293-301.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 12. | | HONGO, J. A.; CASTRO, G. M. de; CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P. POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. BMC Genomics, London, v. 16, n. 1, 567, Aug. 2015.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 15. | | FELTRIM, D.; GUPTA, B.; GUNDIMEDA, S.; KIYOTA, E.; DOMINGUES JÚNIOR, A. P.; CINTRA, L. C.; MAZZAFERA, P. Exposure of Eucalyptus to varied temperature and CO2 has a profound effect on the physiology and expression of genes related to cell wall formation and remodeling. Tree Genetics & Genomes v. 18, n. 1, 3, Feb. 2022.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 16. | | CINTRA, L. C.; ZERLOTINI, A.; SILVA, F. R. da; LOBO, F. P.; YAMAGISHI, M. E. B.; KUSER-FALCÃO, P. R. K.; GIACHETTO, P. F. Embrapa Bioinformatic Multi-user laboratory. In: INTERNATIONAL PLANT & ANIMAL GENOME, 21., 2013, San Diego. [Abstracts...]. [S.l.: s.n.], 2013. Não paginado. Pôster 1017.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 17. | | KUSER-FALCÃO, P. R.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, F. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI, A.; HIGA, R.; VIEIRA, F. Embrapa Bioinformatics Multi-Users Laboratory - LMB. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 8., 2012, Campinas. Abstract book... Ribeirão Preto: AB3C, 2012. Não paginado. X-MEETING 2012.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 18. | | GUIMARÃES, P. S.; SCHENK, J. C. M.; CINTRA, L. C.; GIACHETTO, P. F.; SILVAROLLA, M. B.; PADILHA, L.; MALUF, M. P. Large-scale prospection of genes on caffeine-free Coffea arabica plants - discovery of novel markers associated with development and secondary metabolism. Plant Gene, v. 27, p. 1-9, Sept. 2021. Article 100314.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Café. |
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| 19. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. de novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum). In: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2015. não paginado. Pôster P0231.| Biblioteca(s): Embrapa Pesca e Aquicultura. |
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| 20. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. de novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum). In: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2015. não paginado. PAG 2015. Pôster P0231.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 41 | |
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Registro Completo
|
Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
10/04/2015 |
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Data da última atualização: |
21/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
FRANCISCO PEREIRA LOBO, CNPTIA; LEANDRO CARRIJO CINTRA, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, UnB; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
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Título: |
de novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum). |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2015. |
|
Páginas: |
não paginado. |
|
Idioma: |
Inglês |
|
Notas: |
PAG 2015. Pôster P0231. |
|
Conteúdo: |
The Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent efforts to domesticate, breed and raise the species in aquaculture systems has led to significant increases in production (>10-fold) over the last ten years. Current production is above 120,000 metric tons per year with a strong growth trend, making it the most important native aquaculture species in Brazil. Data for generating the draft assembly were produced from shotgun libraries with two different insert sizes and mate-paired libraries with four different sizes sequenced (2x150bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1,5pg = 1.467Gbp). Sequence assembly was performed with SOAPdenovo and generated 8.924 scaffolds spanning 1.54 Gbp (N50: 2,041,733bp (162 scaffolds), N90: 200,945bp (1009 scaffolds), ~500Mbp of unmapped nucleotides). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species and will be a valuable source of information for marker detection/selection, genetic improvement, conservation and basic biology studies in this species. |
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Palavras-Chave: |
Sequência genômica. |
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Thesagro: |
Colossoma Macropomum; Tambaqui. |
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Thesaurus NAL: |
Genome assembly; Sequence analysis. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/122093/1/P0231.pdf
|
|
Marc: |
LEADER 02341nam a2200277 a 4500
001 2013201
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008 2015 bl uuuu u00u1 u #d
100 1 $aLOBO, F. P.
245 $ade novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum).$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.]$c2015
300 $anão paginado.
500 $aPAG 2015. Pôster P0231.
520 $aThe Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent efforts to domesticate, breed and raise the species in aquaculture systems has led to significant increases in production (>10-fold) over the last ten years. Current production is above 120,000 metric tons per year with a strong growth trend, making it the most important native aquaculture species in Brazil. Data for generating the draft assembly were produced from shotgun libraries with two different insert sizes and mate-paired libraries with four different sizes sequenced (2x150bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1,5pg = 1.467Gbp). Sequence assembly was performed with SOAPdenovo and generated 8.924 scaffolds spanning 1.54 Gbp (N50: 2,041,733bp (162 scaffolds), N90: 200,945bp (1009 scaffolds), ~500Mbp of unmapped nucleotides). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species and will be a valuable source of information for marker detection/selection, genetic improvement, conservation and basic biology studies in this species.
650 $aGenome assembly
650 $aSequence analysis
650 $aColossoma Macropomum
650 $aTambaqui
653 $aSequência genômica
700 1 $aCINTRA, L. C.
700 1 $aVARELA, E. S.
700 1 $aALVES, A. L.
700 1 $aVILLELA, L. C. V.
700 1 $aSILVA, N. M. A. da
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
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Embrapa Agricultura Digital (CNPTIA) |
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