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| Registros recuperados : 305 | |
| 101. |  | IANELLA, P.; VARELA, E. S.; VILLELA, L. C. V.; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. SNP discovery in three South American freshwater characiformes species by deep sequencing of Reduced Representation Libraries (RRL). In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PE0268. PAG 2019.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 102. | | IANELLA, P.; VARELA, E. S.; VILLELA, L. C. V.; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. SNP discovery in three South American freshwater characiformes species by deep sequencing of Reduced Representation Libraries (RRL). In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PE0268| Biblioteca(s): Embrapa Pesca e Aquicultura; Embrapa Recursos Genéticos e Biotecnologia. |
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| 103. | | VILLELA, L. C. V.; ALVES, A.; VARELA, E. S.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. Sequenciamento, montagem de novo e anotação do mitogenoma de Pseudoplatystoma reticulatum (Eigenmman & Eigenmman). In: CONGRESSO BRASILEIRO DE RECURSOS GENÉTICOS, 4., 2016, Curitiba. Recursos genéticos no Brasil: a base para o desenvolvimento sustentável: anais. Brasília, DF: Sociedade Brasileira de Recursos Genéticos, 2016. p. 104.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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| 104. | | VILLELA, L. C. V.; ALVES, A.; VARELA, E. S.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. Sequenciamento, montagem de novo e anotação do mitogenoma de Pseudoplatystoma reticulatum (Eigenmman & Eigenmman). In: CONGRESSO BRASILEIRO DE RECURSOS GENÉTICOS, 4., 2016, Curitiba. Recursos genéticos no Brasil: a base para o desenvolvimento sustentável: anais. Brasília, DF: Sociedade Brasileira de Recursos Genéticos, 2016. p. 104.| Biblioteca(s): Embrapa Pesca e Aquicultura. |
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| 105. | | GUEDES, E.; ANDRADE, L. G. D.; MUNIZ, M. N. M.; TAGLIATTI, R. F.; ARBEX, W. A.; CAETANO, A. R.; PAIVA, S. R.; SILVA, M. V. G. B. Selection of single mucleotide polymorphisms for using in paternity analysis in zebu breeds. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 6., 2010, Ouro Preto. Abstracts... [S.l.: s.n.], 2010.| Biblioteca(s): Embrapa Gado de Leite. |
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| 106. | | GUEDES, E.; ANDRADE, L. G. D.; MUNIZ, M. N. M.; TAGIATTI, R. F.; ARBEX, W. A.; CAETANO, A. R.; PAIVA, S. R.; SILVA, M. V. G. B. Selection of single nucleotide polymorphisms for using in paternity analysis in zebu breeds. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 6., 2010, Minas Gerais. X-Meeting 2010: proceedings. Ouro Preto: Associação Brasileira de Bioinformática e Biologia Computacional, 2010.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 107. | | CAPDEVILLE, G. de; SOUZA JUNIOR, M. T.; SANTOS, J. R. P.; MIRANDA, S. de P.; CAETANO, A. R.; TORRES, F. A. G. Selection and testing of epiphytic yeasts to control anthacnose in post-harvest of papaya fruit. Scientia Horticulturae, v. 111, n. 2, p. 179-185, 2007.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 108. | | SOLLERO, B. P.; GOMES, C. C. G.; ROSO, V. M.; HIGA, R. H.; YOKOO, M. J.; CARDOSO, L. L.; CAETANO, A. R.; CARDOSO, F. F. Goodness of fit comparisons among five bayesian models in genome-wide association of tick resistance in brazilian Hereford and Braford beef cattle. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. Não paginado.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 109. | | SOLLERO, B. P.; GOMES, C. C. G.; ROSO, V. M.; HIGA, R. H.; YOKOO, M. J.; CARDOSO, L. L.; CAETANO, A. R.; CARDOSO, F. F. Goodness of fit comparisons among five bayesian models in genome-wide association of tick resistance in brazilian Hereford and Braford beef cattle. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. Não paginado.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 110. | | SOLLERO, B. P.; GULIAS-GOMES, C. C.; ROSO, V. M.; HIGA, R. H.; YOKOO, M. J. I.; CARDOSO, L. L.; CAETANO, A. R.; CARDOSO, F. F. Goodness of fit comparisons among five bayesian models in genome-wide association of tick resistance in brazilian Hereford and Braford beef cattle. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. 1 CD-ROM.| Biblioteca(s): Embrapa Pecuária Sul. |
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| 111. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.], 2016. Não paginado. PAG 2016. Pôster P0481.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 112. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.], 2016. Não paginado. PAG 2016. Pôster P0481.| Biblioteca(s): Embrapa Pesca e Aquicultura. |
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| 113. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. Não paginado. PAG 2016. Pôster P0481.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 114. | | ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PO0249| Biblioteca(s): Embrapa Pesca e Aquicultura. |
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| 115. | | ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Abstracts... [S.l.: s.n.], 2019. Na publicação: Adhemar Zerlotini. PAG 2019. PO0249.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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| 116. | | CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). In: AQUACULTURE, 2019, New Orleans. Aquaculture: the big choice! abstracts. [S.l.: s.n.], 2019. p. 182.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 117. | | CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). In: AQUACULTURE, 2019, New Orleans. Abstracts. [S.l.]: Word Aquaculture Society, 2019.| Biblioteca(s): Embrapa Pesca e Aquicultura; Embrapa Recursos Genéticos e Biotecnologia. |
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| 118. | | SILVA, J. M. da; GIACHETTO, P. F.; SILVA, L. O. da; CINTRA, L. C.; PAIVA, S. R.; YAMAGISHI, M. E. B.; CAETANO, A. R. Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits. BMC Genomics, London, v. 17, p. 1-14, 2016.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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| 119. | | SILVA, N. M. L.; ALBUQUERQUE, M. do S. M.; CAETANO, A. R.; BIAZIO, G. R. DE; PAIVA, S. R.; MCMANUS, C.; IANELLA, P. Genetic variability of Santa Inês samples stored in the Brazilian Animal Germplasm Biobank (BBGA). In: SIMPOSIO INTERNACIONAL DE RECURSOS GENÉTICOS PARA LAS AMÉRICAS Y EL CARIBE, 11., 2017, Guadalajara. Resúmenes... Guadalajara: [s. n.], 2017. p. 207| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 120. | | GIACHETTO, P. F.; SILVA, J. M. da; SILVA, L. O. C. da; CINTRA, L. C.; PAIVA, S. R.; CAETANO, A. R.; YAMAGISHI, M. E. B. Genomic variant hotspots in nelore cattle revealed by missing genotypes. In: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2015. Não paginado. PAG 2015. Pôster P0289.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 305 | |
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Registro Completo
|
Biblioteca(s): |
Embrapa Pesca e Aquicultura. |
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Data corrente: |
23/02/2016 |
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Data da última atualização: |
23/02/2016 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
FRANCISCO PEREIRA LOBO, CNPTIA; LEANDRO CARRIJO CINTRA, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, UnB; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
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Título: |
de novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum). |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2015. |
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Páginas: |
não paginado. |
|
Idioma: |
Inglês |
|
Notas: |
Pôster P0231. |
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Conteúdo: |
The Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent efforts to domesticate, breed and raise the species in aquaculture systems has led to significant increases in production (>10-fold) over the last ten years. Current production is above 120,000 metric tons per year with a strong growth trend, making it the most important native aquaculture species in Brazil. Data for generating the draft assembly were produced from shotgun libraries with two different insert sizes and mate-paired libraries with four different sizes sequenced (2x150bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1,5pg = 1.467Gbp). Sequence assembly was performed with SOAPdenovo and generated 8.924 scaffolds spanning 1.54 Gbp (N50: 2,041,733bp (162 scaffolds), N90: 200,945bp (1009 scaffolds), ~500Mbp of unmapped nucleotides). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species and will be a valuable source of information for marker detection/selection, genetic improvement, conservation and basic biology studies in this species. |
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Palavras-Chave: |
Sequência genômica. |
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Thesagro: |
Colossoma Macropomum; Tambaqui. |
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Thesaurus NAL: |
Genome assembly; Sequence analysis. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/122093/1/P0231.pdf
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|
Marc: |
LEADER 02353naa a2200289 a 4500
001 2038250
005 2016-02-23
008 2015 bl uuuu u00u1 u #d
100 1 $aLOBO, F. P.
245 $ade novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum).$h[electronic resource]
260 $c2015
300 $anão paginado.
500 $aPôster P0231.
520 $aThe Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent efforts to domesticate, breed and raise the species in aquaculture systems has led to significant increases in production (>10-fold) over the last ten years. Current production is above 120,000 metric tons per year with a strong growth trend, making it the most important native aquaculture species in Brazil. Data for generating the draft assembly were produced from shotgun libraries with two different insert sizes and mate-paired libraries with four different sizes sequenced (2x150bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1,5pg = 1.467Gbp). Sequence assembly was performed with SOAPdenovo and generated 8.924 scaffolds spanning 1.54 Gbp (N50: 2,041,733bp (162 scaffolds), N90: 200,945bp (1009 scaffolds), ~500Mbp of unmapped nucleotides). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species and will be a valuable source of information for marker detection/selection, genetic improvement, conservation and basic biology studies in this species.
650 $aGenome assembly
650 $aSequence analysis
650 $aColossoma Macropomum
650 $aTambaqui
653 $aSequência genômica
700 1 $aCINTRA, L. C.
700 1 $aVARELA, E. S.
700 1 $aALVES, A. L.
700 1 $aVILLELA, L. C. V.
700 1 $aSILVA, N. M. A. da
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
773 $tIn: PLANT & ANIMAL GENOME CONFERENCE, 23., 2015, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2015.
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Embrapa Pesca e Aquicultura (CNPASA) |
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