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| Registros recuperados : 8 | |
| 2. |  | RORATO, P. R. N.; ARAÚJO, R. O. de; MARCONDES, C. R.; EVERLING, D. M.; BRESOLIN, T.; WEBER, T. Tendências genéticas e fenotípicas para características produtivas e reprodutivas para fêmeas da raça Nelore. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 9., 2012, João Pessoa. Anais... João Pessoa. SBMA, 2012.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 3. | | EVERLING, D. M.; RORATO, P. R. N.; ARAUJO, R. O de; BOLIGON, A. A.; BRESOLIN, T.; DORNELLES, M. de A.; WEBER, T.; PACHECO, P. S.; CAMPOS, L. T. Associação genética de escores de conformação com características de crescimento em bovinos da raça Angus. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 47, n. 10, p. 1524-1532, out. 2012. Título em inglês: Genetic association of conformation scores with growth traits in Angus breed cattle.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 4. | | CAVANI, L.; LOPES, F. B.; GIGLIOTID, R.; BRESOLIN, T.; CAMPOS, G. S.; OKINO, C. H.; GULIAS-GOMES, C. C.; CAETANO, A. R.; OLIVEIRA, M. C. de S.; CARDOSO, F. F.; ROSA, G. J. de M.; OLIVEIRA, H. N. de. Inferring phenotypic causal networks for tick infestation, Babesia bovis infection, and weight gain in Hereford and Braford cattle using structural equation models. Livestock Science, v. 238, 2020.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | CAVANI, L.; LOPES, F. B.; GIGLIOTI, R.; BRESOLIN, T.; CAMPOS, G. S.; OKINO, C. H.; GULIAS-GOMES, C. C.; CAETANO, A. R.; OLIVEIRA, M. C. de S.; CARDOSO, F. F.; ROSA, G. J. de M.; OLIVEIRA, H. N. de. Inferring phenotypic causal networks for tick infestation, Babesia bovis infection, and weight gain in Hereford and Braford cattle using structural equation models. Livestock Science, v. 238, aug. 2020, 104032. 8 p.| Biblioteca(s): Embrapa Pecuária Sudeste; Embrapa Pecuária Sul. |
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| 6. | | OLIVEIRA, D. A. B.; BRESOLIN, T.; COELHO, S. G.; CAMPOS, M. M.; LAGE, C. F. A.; LEÃO, J. M.; PEREIRA, L. G. R.; HERNANDEZ, L.; DOREA, J. R. R. A polar transformation augmentation approach for enhancing mammary gland segmentation in ultrasound images. Computers and Electronics in Agriculture, v. 220, 108825, 2024.| Biblioteca(s): Embrapa Gado de Leite. |
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| 7. | | CARDOSO, D. F.; FERNANDES JÚNIOR, G. A.; SCALEZ, D. C. B.; ALVEZ, A. A. C.; MAGALHÃES, A. F. B.; BRESOLIN, T.; VENTURA, R. V.; LI, C.; OLIVEIRA, M. C. de S.; PORTO NETO, L. R.; CARVALHEIRO, R.; OLIVEIRA, H. N. de; TONHATI, H.; ALBUQUERQUE, L. G. Uncovering sub-structure and genomic profiles in across-countries subpopulations of Angus Cattle. Scientific Reports, v. 10, article 8770, 2020. 11 p.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 8. | | TEIXEIRA, V. A.; LANA, A. M. Q.; BRESOLIN, T.; TOMICH, T. R.; SOUZA, G. M.; FURLONG, J.; RODRIGUES, J. P. P.; COELHO, S. G.; GONÇALVES, L. C.; SILVEIRA, J. A. G.; FERREIRA, L. D.; FACURY FILHO, E. J.; CAMPOS, M. M.; DOREA, J. R. R.; PEREIRA, L. G. R. Using rumination and activity data for early detection of anaplasmosis disease in dairy heifer calves. Journal of Dairy Science, v. 105, n. 5, p. 1-13, 2022.| Biblioteca(s): Embrapa Gado de Leite. |
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| Registros recuperados : 8 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
08/12/2020 |
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Data da última atualização: |
08/12/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
CARDOSO, D. F.; FERNANDES JÚNIOR, G. A.; SCALEZ, D. C. B.; ALVEZ, A. A. C.; MAGALHÃES, A. F. B.; BRESOLIN, T.; VENTURA, R. V.; LI, C.; OLIVEIRA, M. C. de S.; PORTO NETO, L. R.; CARVALHEIRO, R.; OLIVEIRA, H. N. de; TONHATI, H.; ALBUQUERQUE, L. G. |
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Afiliação: |
Diercles Francisco Cardoso, UNESP; Gerardo Alves Fernandes Júnior, UNESP; Daiane Cristina Becker Scalez, UNESP; Anderson Antonio Carvalho Alves, UNESP; Ana Fabrícia Braga Magalhães, UNESP; Tiago Bresolin, UNESP; Ricardo Vieira Ventura, USP; Changxi Li, University of Alberta; MARCIA CRISTINA DE SENA OLIVEIRA, CPPSE; Laercio Ribeiro Porto-Neto, CSIRO; Roberto Carvalheiro, UNESP; Henrique Nunes de Oliveira, UNESP; Humberto Tonhati, UNESP; Lucia Galvão Albuquerque, UNESP. |
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Título: |
Uncovering sub-structure and genomic profiles in across-countries subpopulations of Angus Cattle. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Scientific Reports, v. 10, article 8770, 2020. |
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Páginas: |
11 p. |
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DOI: |
https://doi.org/10.1038/s41598-020-65565-1 |
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Idioma: |
Inglês |
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Conteúdo: |
Highlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N?= 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via FST and varLD tests. The principal component analysis revealed a sub-structure with a close connection between the two subpopulations. The averages of genomic relationships, inbreeding coefficients, and linkage disequilibrium at varying genomic distances were rather similar across them, suggesting non-accentuated differences in overall genomic diversity. Autozygosity islands revealed selection signatures common to both subpopulations at chromosomes 13 (63.77?65.25 Mb) and 14 (22.81?23.57 Mb), which are notably known regions affecting growth traits. Nevertheless, further autozygosity islands along with FST and varLD tests unravel particular sites with accentuated population subdivision at BTAs 7 and 18 overlapping with known QTL and candidate genes of reproductive performance, thermoregulation, and resistance to infectious diseases. Our findings indicate overall genomic similarity between Angus subpopulations, with noticeable signals of divergent selection in genomic regions associated with the adaptation in different environments. MenosHighlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N?= 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via FST and varLD tests. The principal component analysis revealed a sub-structure with a close connection between the two subpopulations. The averages of genomic relationships, inbreeding coefficients, and linkage disequilibrium at varying genomic distances were rather similar across them, suggesting non-accentuated differences in overall genomic diversity. Autozygosity islands revealed selection signatures common to both subpopulations at chromosomes 13 (63.77?65.25 Mb) and 14 (22.81?23.57 Mb), which are notably known regions affecting growth traits. Nevertheless, further autozygosity islands along with FST and varLD tests unravel particular sites with accentuated population subdivision at BTAs 7 and 18 overlapping with known QTL and candidate genes of reproductive performance, thermoregulation, and resistance to infectious diseases. Our findings indicate overall genomi... Mostrar Tudo |
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Palavras-Chave: |
Autozygosity islands; FST; Overall genomic diversity; Rather similar across; ROH islands; VarLD signals. |
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Thesaurus NAL: |
Angus. |
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Categoria do assunto: |
H Saúde e Patologia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/218925/1/UncoveringSubStructure.pdf
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Marc: |
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024 7 $ahttps://doi.org/10.1038/s41598-020-65565-1$2DOI
100 1 $aCARDOSO, D. F.
245 $aUncovering sub-structure and genomic profiles in across-countries subpopulations of Angus Cattle.$h[electronic resource]
260 $c2020
300 $a11 p.
520 $aHighlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N?= 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via FST and varLD tests. The principal component analysis revealed a sub-structure with a close connection between the two subpopulations. The averages of genomic relationships, inbreeding coefficients, and linkage disequilibrium at varying genomic distances were rather similar across them, suggesting non-accentuated differences in overall genomic diversity. Autozygosity islands revealed selection signatures common to both subpopulations at chromosomes 13 (63.77?65.25 Mb) and 14 (22.81?23.57 Mb), which are notably known regions affecting growth traits. Nevertheless, further autozygosity islands along with FST and varLD tests unravel particular sites with accentuated population subdivision at BTAs 7 and 18 overlapping with known QTL and candidate genes of reproductive performance, thermoregulation, and resistance to infectious diseases. Our findings indicate overall genomic similarity between Angus subpopulations, with noticeable signals of divergent selection in genomic regions associated with the adaptation in different environments.
650 $aAngus
653 $aAutozygosity islands
653 $aFST
653 $aOverall genomic diversity
653 $aRather similar across
653 $aROH islands
653 $aVarLD signals
700 1 $aFERNANDES JÚNIOR, G. A.
700 1 $aSCALEZ, D. C. B.
700 1 $aALVEZ, A. A. C.
700 1 $aMAGALHÃES, A. F. B.
700 1 $aBRESOLIN, T.
700 1 $aVENTURA, R. V.
700 1 $aLI, C.
700 1 $aOLIVEIRA, M. C. de S.
700 1 $aPORTO NETO, L. R.
700 1 $aCARVALHEIRO, R.
700 1 $aOLIVEIRA, H. N. de
700 1 $aTONHATI, H.
700 1 $aALBUQUERQUE, L. G.
773 $tScientific Reports$gv. 10, article 8770, 2020.
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Embrapa Pecuária Sudeste (CPPSE) |
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