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| Registros recuperados : 45 | |
| 21. |  | BRONDANI, C.; BRONDANI, R. P. V.; BORBA, T. C. O.; BRUNES, T.; RANGEL, P. H. N.; GUIMARÃES, E. P. Microsatellite analysis of Tio Taka, the first rice commercial cultivar released from the recurrent selection breeding method. International Rice Commission Newsletter, v. 54, p. 52-62, 2005.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 24. | | SILVEIRA, R. D. D.; SANTOS, K. F. E. N.; CRUZEIRO, G. A. V.; BORBA, T. C. O.; DIDONET, C. G. M.; BRONDANI, C. Análise das proteínas de reserva do grão dos 550 acessos da coleção nuclear de arroz da Embrapa (CNAE). In: CONGRESSO DE PESQUISA, ENSINO E EXTENSÃO, 5., 2008, Goiânia. Produção do conhecimento e transformação social: anais... Goiânia: Universidade Federal de Goiás, 2008. 1 CD-ROM.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 25. | | GOULART, I. C. G. R.; KUPAS, V.; DIAS, L. P.; ROSA, T. M.; BORBA, T. C. O.; MENEZES, V. G.; MEROTTO JUNIOR, A. Análise da estrutura populacional e determinação do fluxo gênico entre populações de arroz vermelho. In: CONGRESSO BRASILEIRO DE ARROZ IRRIGADO, 7., 2011, Balneário Camboriú. Racionalizando recursos e ampliando oportunidades: anais. Itajaí: Epagri, 2011. v. 1. p. 427-430.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 26. | | RESENDE, L. V.; BRONDANI, R.; MELO, D. B.; TELLES, M. P. C.; BORBA, T. C. O.; SOARES, T. N.; SILVA JUNIOR, N. J. Isolamento e caracterização de regiões microssatélites em Hypostomus gymnorhyncus. In: CONGRESSO BRASILEIRO DE GENÉTICA, 54., 2008, Salvador. Resumos... Salvador: SBG, 2008. p. 93.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 27. | | VIANELLO, R. P. V.; MARTINS, F. J.; RANGEL, P. N.; BORBA, T. C. O.; MORAES, C. G.; BRONDANI, C.; MELLO, L. C.; SIMPLÍCIO, A. P.; ABREU, B. S. Genetic analysis in Phaseolus vulgaris by molecular markers related to yield traits under drought tolerance. In: SIMPÓSIO BRASILEIRO DE GENÉTICA MOLECULAR DE PLANTAS, 3., 2011, Ilhéus. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2011. 1 CD-ROM.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 28. | | BORBA, T. C. O.; VEIGA, M. M. A.; MENEZES, I. P. P.; PEREIRA, H. S.; BRONDANI, C.; BRONDANI, R. P. V. Genetic diversity by molecular markers in lines of phaseolus vulgaris from VCU experiments at Embrapa Rice and Beans breeding program. In: SIMPÓSIO BRASILEIRO DE GENÉTICA MOLECULAR DE PLANTAS, 3., 2011, Ilhéus. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2011. 1 CD-ROM.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 30. | | SOARES, T. N.; RESENDE, L. V.; MELO, D. B.; BRONDANI, R. P. V.; TELLES, M. P. C.; BORBA, T. C. O.; CHAVES, L. J. Sequenciamento "shotgun" para o desenvolvimento de marcadores SSR em Dipteryx alata Vogel. In: CONGRESSO BRASILEIRO DE GENÉTICA, 54., 2008, Salvador. Resumos... Salvador: SBG, 2008. p. 27.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 31. | | MORAIS JÚNIOR, O. P.; BRESEGHELLO, F.; DUARTE, J. B.; COELHO, A. S. G.; BORBA, T. C. O.; AGUIAR, J. T.; NEVES, P. C. F.; MORAIS, O. P. Assessing prediction models for different traits in a rice population derived from a Recurrent Selection Program. Crop Science, v. 58, n. 6, p. 2347-2359, Nov./Dec. 2018.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 32. | | VEIGA, M. M. A.; VALDISSER, P. A. M. R.; BRONDANI, R. P. V.; CIESLAK, J. F.; PEREIRA, H. S.; MELO, L. C.; BORBA, T. C. O. Caracterização molecular dos acessos de feijoeiro comum que compõem os ensaios de Valor de Cultivo e Uso (VCU) dos anos de 2009/2010. In: CONGRESSO BRASILEIRO DE GENÉTICA, 56., 2010, Guarujá. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2010. p. 148.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 33. | | GARCIA, R. A. V.; RANGEL, P. N.; BRONDANI, C.; MARTINS, W. S.; MELO, L. C.; CARNEIRO, M. S.; BORBA, T. C. O.; BRONDANI, R. P. V. The characterization of a new set of EST-derived simple sequence repeat (SSR) markers as a resource for the genetic analysis of Phaseolus vulgaris. BMC Genetics, v. 12, n. 41, 2011.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 34. | | CARDOSO, P. C. B.; BRONDANI, C.; MENEZES, I. P. P.; VALDISSER, P. A. M. R.; BORBA, T. C. O.; DEL PELOSO, M. J.; VIANELLO, R. P. Discrimination of common bean cultivars using multiplexed microsatellite markers. Genetics and Molecular Research, v. 13, n. 1, p. 1964-1978, 2014.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 35. | | MORAIS JÚNIOR, O. P.; DUARTE, J. B.; BRESEGHELLO, F.; COELHO, A. S. G.; BORBA, T. C. O.; AGUIAR, J. T.; NEVES, P. C. F.; MORAIS, O. P. Relevance of additive and non-additive genetic relatedness for genomic prediction in rice population under recurrent selection breeding Genetics and Molecular Research, v. 16, n. 4, gmr16039849, Dec. 2017.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 36. | | BORBA, T. C. O.; VIDOTTI, M. S.; CASCÃO, L. M.; COLOMBARI FILHO, J. M.; ABREU, A. G. de; MELLO, R. N. de. Validação do QTL PUP1 e diversidade genética em genótipos de arroz de terras altas. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 8., 2015, Goiânia. O melhoramento de plantas, o futuro da agricultura e a soberania nacional: anais. Goiânia: UFG: SBMP, 2015.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 37. | | MARIANO NETO, A.; CRISPIM, B. C. F.; BORBA, T. C. O.; SILVA-LOBO, V. L.; FILIPPI, M. C.; MELLO, R. N. de. Variabilidade de isolados de Magnaporthe oryzae em arroz no Brasil. Tropical Plant Pathology, Brasília, DF, v. 35, p. S222, ago. 2010. Suplemento, ref. 07.095. Edição dos resumos do XLIII Congresso Brasileiro de Fitopatologia, Cuiabá, ago. 2010.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 38. | | COELHO, G. R. C.; BRONDANI, C.; HOFFMANN, L. V.; VALDISSER, P. A. M. R.; BORBA, T. C. O.; MENDONÇA, J. A.; RODRIGUES, L. A.; MENEZES, I. P. P. de. Genetic diversity of high performance cultivars of upland and irrigated Brazilian rice. Genetics and Molecular Research, v. 16, n. 3, gmr16039793, 2017.| Biblioteca(s): Embrapa Algodão; Embrapa Arroz e Feijão. |
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| 39. | | BRONDANI, C.; CALDEIRA, K. da S.; BORBA, T. C. O.; RANGEL. P. N.; MORAIS, O. P. de; CASTRO, E. da M. de; RANGEL, P. H. N.; MENDONÇA, J. A.; BRONDANI, R. P. Genetic variability analysis of elite upland rice genotypes with SSR markers. Crop Breeding and Applied Biotechnology, v. 6, n. 1, p. 9-17, Mar. 2006.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 40. | | LEAL-BERTIOLI, S. C. M.; MORETZSOHN, M. C.; ROBERTS, P. A.; BALLEN-TABORDA, C.; BORBA, T. C. O.; VALDISSER, P. A.; VIANELLO, R. P.; ARAUJO, A. C. G.; GUIMARAES, P. M.; BERTIOLI, D. J. Genetic mapping of resistance to Meloidogyne arenaria in arachis stenosperma: a new source of nematode resistance for peanut. G3: Genes, Genomes, Genetics, v. 12, 2015.| Biblioteca(s): Embrapa Arroz e Feijão; Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 45 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
29/06/2011 |
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Data da última atualização: |
25/07/2011 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 1 |
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Autoria: |
GARCIA, R. A. V.; RANGEL, P. N.; BRONDANI, C.; MARTINS, W. S.; MELO, L. C.; CARNEIRO, M. S.; BORBA, T. C. O.; BRONDANI, R. P. V. |
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Afiliação: |
ROBERTHA A. V. GARCIA, UNIVERSIDADE FEDERAL DE GOIÁS; PRISCILA NASCIMENTO RANGEL, UNIVERSIDADE FEDERAL DE GOIÁS; CLAUDIO BRONDANI, CNPAF; WELLINGTON S. MARTINS, UNIVERSIDADE FEDERAL DE GOIÁS; LEONARDO CUNHA MELO, CNPAF; MONALISA S. CARNEIRO, UNIVERSIDADE FEDERAL DE SÃO CARLOS; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; ROSANA PEREIRA VIANELLO BRONDANI, CNPAF. |
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Título: |
The characterization of a new set of EST-derived simple sequence repeat (SSR) markers as a resource for the genetic analysis of Phaseolus vulgaris. |
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Ano de publicação: |
2011 |
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Fonte/Imprenta: |
BMC Genetics, v. 12, n. 41, 2011. |
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Idioma: |
Inglês |
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Conteúdo: |
Background: Over recent years, a growing effort has been made to develop microsatellite markers for the genomic analysis of the common bean (Phaseolus vulgaris) to broaden the knowledge of the molecular genetic basis of this species. The availability of large sets of expressed sequence tags (ESTs) in public databases has given rise to an expedient approach for the identification of SSRs (Simple Sequence Repeats), specifically EST-derived SSRs. In the present work, a battery of new microsatellite markers was obtained from a search of the Phaseolus vulgaris EST database. The diversity, degree of transferability and polymorphism of these markers were tested. Results: From 9,583 valid ESTs, 4,764 had microsatellite motifs, from which 377 were used to design primers, and 302 (80.11%) showed good amplification quality. To analyze transferability, a group of 167 SSRs were tested, and the results showed that they were 82% transferable across at least one species. The highest amplification rates were observed between the species from the Phaseolus (63.7%), Vigna (25.9%), Glycine (19.8%), Medicago (10.2%), Dipterix (6%) and Arachis (1.8%) genera. The average PIC (Polymorphism Information Content) varied from 0.53 for genomic SSRs to 0.47 for EST-SSRs, and the average number of alleles per locus was 4 and 3, respectively. Among the 315 newly tested SSRs in the BJ (BAT93 X Jalo EEP558) population, 24% (76) were polymorphic. The integration of these segregant loci into a framework map composed of 123 previously obtained SSR markers yielded a total of 199 segregant loci, of which 182 (91.5%) were mapped to 14 linkage groups, resulting in a map length of 1,157 cM. Conclusions: A total of 302 newly developed EST-SSR markers, showing good amplification quality, are available for the genetic analysis of Phaseolus vulgaris. These markers showed satisfactory rates of transferability, especially between species that have great economic and genomic values. Their diversity was comparable to genomic SSRs, and they were incorporated in the common bean reference genetic map, which constitutes an important contribution to and advance in Phaseolus vulgaris genomic research. MenosBackground: Over recent years, a growing effort has been made to develop microsatellite markers for the genomic analysis of the common bean (Phaseolus vulgaris) to broaden the knowledge of the molecular genetic basis of this species. The availability of large sets of expressed sequence tags (ESTs) in public databases has given rise to an expedient approach for the identification of SSRs (Simple Sequence Repeats), specifically EST-derived SSRs. In the present work, a battery of new microsatellite markers was obtained from a search of the Phaseolus vulgaris EST database. The diversity, degree of transferability and polymorphism of these markers were tested. Results: From 9,583 valid ESTs, 4,764 had microsatellite motifs, from which 377 were used to design primers, and 302 (80.11%) showed good amplification quality. To analyze transferability, a group of 167 SSRs were tested, and the results showed that they were 82% transferable across at least one species. The highest amplification rates were observed between the species from the Phaseolus (63.7%), Vigna (25.9%), Glycine (19.8%), Medicago (10.2%), Dipterix (6%) and Arachis (1.8%) genera. The average PIC (Polymorphism Information Content) varied from 0.53 for genomic SSRs to 0.47 for EST-SSRs, and the average number of alleles per locus was 4 and 3, respectively. Among the 315 newly tested SSRs in the BJ (BAT93 X Jalo EEP558) population, 24% (76) were polymorphic. The integration of these segregant loci into a framework map co... Mostrar Tudo |
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Palavras-Chave: |
Análise genética; Microssatélite. |
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Thesagro: |
Feijão; Genética; Marcador molecular; Phaseolus vulgaris. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/36872/1/bmc.pdf
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|
Marc: |
LEADER 03018naa a2200277 a 4500
001 1894904
005 2011-07-25
008 2011 bl uuuu u00u1 u #d
100 1 $aGARCIA, R. A. V.
245 $aThe characterization of a new set of EST-derived simple sequence repeat (SSR) markers as a resource for the genetic analysis of Phaseolus vulgaris.$h[electronic resource]
260 $c2011
520 $aBackground: Over recent years, a growing effort has been made to develop microsatellite markers for the genomic analysis of the common bean (Phaseolus vulgaris) to broaden the knowledge of the molecular genetic basis of this species. The availability of large sets of expressed sequence tags (ESTs) in public databases has given rise to an expedient approach for the identification of SSRs (Simple Sequence Repeats), specifically EST-derived SSRs. In the present work, a battery of new microsatellite markers was obtained from a search of the Phaseolus vulgaris EST database. The diversity, degree of transferability and polymorphism of these markers were tested. Results: From 9,583 valid ESTs, 4,764 had microsatellite motifs, from which 377 were used to design primers, and 302 (80.11%) showed good amplification quality. To analyze transferability, a group of 167 SSRs were tested, and the results showed that they were 82% transferable across at least one species. The highest amplification rates were observed between the species from the Phaseolus (63.7%), Vigna (25.9%), Glycine (19.8%), Medicago (10.2%), Dipterix (6%) and Arachis (1.8%) genera. The average PIC (Polymorphism Information Content) varied from 0.53 for genomic SSRs to 0.47 for EST-SSRs, and the average number of alleles per locus was 4 and 3, respectively. Among the 315 newly tested SSRs in the BJ (BAT93 X Jalo EEP558) population, 24% (76) were polymorphic. The integration of these segregant loci into a framework map composed of 123 previously obtained SSR markers yielded a total of 199 segregant loci, of which 182 (91.5%) were mapped to 14 linkage groups, resulting in a map length of 1,157 cM. Conclusions: A total of 302 newly developed EST-SSR markers, showing good amplification quality, are available for the genetic analysis of Phaseolus vulgaris. These markers showed satisfactory rates of transferability, especially between species that have great economic and genomic values. Their diversity was comparable to genomic SSRs, and they were incorporated in the common bean reference genetic map, which constitutes an important contribution to and advance in Phaseolus vulgaris genomic research.
650 $aFeijão
650 $aGenética
650 $aMarcador molecular
650 $aPhaseolus vulgaris
653 $aAnálise genética
653 $aMicrossatélite
700 1 $aRANGEL, P. N.
700 1 $aBRONDANI, C.
700 1 $aMARTINS, W. S.
700 1 $aMELO, L. C.
700 1 $aCARNEIRO, M. S.
700 1 $aBORBA, T. C. O.
700 1 $aBRONDANI, R. P. V.
773 $tBMC Genetics$gv. 12, n. 41, 2011.
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