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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
01/02/2011 |
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Data da última atualização: |
24/02/2011 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
HIGA, R. H.; TOZZI, C. L. |
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Afiliação: |
ROBERTO HIROSHI HIGA, FEEC/UNICAMP, CNPTIA; CLÉSIO LUIS TOZZI, FEEC/UNICAMP. |
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Título: |
Prediction of binding hot spot residues by using structural and evolutionary parameters. |
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Ano de publicação: |
2009 |
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Fonte/Imprenta: |
Genetics and Molecular Biology, Ribeirão Preto, v. 32, n. 3, p. 626-633, 2009. |
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Idioma: |
Inglês |
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Conteúdo: |
In this work, we present a method for predicting hot spot residues by using a set of structural and evolutionary parameters. Unlike previous studies, we use a set of parameters which do not depend on the structure of the protein in complex, so that the predictor can also be used when the interface region is unknown. Despite the fact that no information concerning proteins in complex is used for prediction, the application of the method to a compiled dataset described in the literature achieved a performance of 60.4%, as measured by F-Measure, corresponding to a recall of 78.1% and a precision of 49.5%. This result is higher than those reported by previous studies using the same data set. |
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Palavras-Chave: |
Estrutura proteica; Interações proteína-proteína; Previsão de resíduos hot spots. |
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Thesaurus Nal: |
Prediction; Protein structure. |
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Categoria do assunto: |
W Química e Física |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/26210/1/gmb2009.pdf
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Marc: |
LEADER 01331naa a2200193 a 4500
001 1875214
005 2011-02-24
008 2009 bl uuuu u00u1 u #d
100 1 $aHIGA, R. H.
245 $aPrediction of binding hot spot residues by using structural and evolutionary parameters.$h[electronic resource]
260 $c2009
520 $aIn this work, we present a method for predicting hot spot residues by using a set of structural and evolutionary parameters. Unlike previous studies, we use a set of parameters which do not depend on the structure of the protein in complex, so that the predictor can also be used when the interface region is unknown. Despite the fact that no information concerning proteins in complex is used for prediction, the application of the method to a compiled dataset described in the literature achieved a performance of 60.4%, as measured by F-Measure, corresponding to a recall of 78.1% and a precision of 49.5%. This result is higher than those reported by previous studies using the same data set.
650 $aPrediction
650 $aProtein structure
653 $aEstrutura proteica
653 $aInterações proteína-proteína
653 $aPrevisão de resíduos hot spots
700 1 $aTOZZI, C. L.
773 $tGenetics and Molecular Biology, Ribeirão Preto$gv. 32, n. 3, p. 626-633, 2009.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
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Data corrente: |
23/06/2014 |
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Data da última atualização: |
22/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
LIMA, J. G. de; BANNINK, A.; POL VAN DASSELAAR, A. van den; BARIONI, L. G.; SANTOS, P. M. |
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Afiliação: |
J. GERALDO DE LIMA, USP; A. BANNINK, Wageningen UR Livestock Research; A. VAN DEN POL VAN DASSELAAR, Wageningen UR Livestock Research; LUIS GUSTAVO BARIONI, CNPTIA; PATRICIA MENEZES SANTOS, CPPSE. |
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Título: |
Effect of improving diet quality by feeding supplements on methane emission in different production systems of beef cattle in Brazil. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
In: LIVESTOCK, CLIMATE CHANGE AND FOOD SECURITY CONFERENCE, 2014, Madrid. Conference abstract book... [Paris]: INRA, 2014. |
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Páginas: |
p. 27. |
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Idioma: |
Inglês |
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Conteúdo: |
In Brazil, the national inventories on methane emission are carried out using the Tier 2 approach published by the Intergovernmental Panel on Climate Change (IPCC). Although, IPCC recommends the use of a more specific Tier 3 approach, this is hampered by a lack of consolidated data for development, evaluation and application of such a Tier 3 approach. |
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Palavras-Chave: |
Emissão de metano. |
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Thesagro: |
Gado de Corte; Nutrição animal; Suplemento Alimentar. |
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Thesaurus NAL: |
Beef cattle; Beef cows; Dietary supplements; Feed supplements; Methane. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/103962/1/effect-improving.pdf
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/115573/1/PROCI-2014.00219.pdf
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Marc: |
LEADER 01252nam a2200277 a 4500
001 1988738
005 2020-01-22
008 2014 bl uuuu u00u1 u #d
100 1 $aLIMA, J. G. de
245 $aEffect of improving diet quality by feeding supplements on methane emission in different production systems of beef cattle in Brazil.
260 $aIn: LIVESTOCK, CLIMATE CHANGE AND FOOD SECURITY CONFERENCE, 2014, Madrid. Conference abstract book... [Paris]: INRA$c2014
300 $ap. 27.
520 $aIn Brazil, the national inventories on methane emission are carried out using the Tier 2 approach published by the Intergovernmental Panel on Climate Change (IPCC). Although, IPCC recommends the use of a more specific Tier 3 approach, this is hampered by a lack of consolidated data for development, evaluation and application of such a Tier 3 approach.
650 $aBeef cattle
650 $aBeef cows
650 $aDietary supplements
650 $aFeed supplements
650 $aMethane
650 $aGado de Corte
650 $aNutrição animal
650 $aSuplemento Alimentar
653 $aEmissão de metano
700 1 $aBANNINK, A.
700 1 $aPOL VAN DASSELAAR, A. van den
700 1 $aBARIONI, L. G.
700 1 $aSANTOS, P. M.
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